BAC Information

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BAC

Clone NameB6Ng01-025B22
Chromosome3 (Build37)12 (Build37)
Map Location 37,367,630 - 37,367,95137,781,180 - 37,781,785
singlet/doubletsingletsinglet
Overlap geneSpata5
Upstream geneAnxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6
Downstream geneLOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025B22.bB6Ng01-025B22.g
ACCDH856559DH856560
length753761
definitionDH856559|Mus musculus domesticus DNA, BAC clone: B6Ng01-025B22, 5' end.DH856560|Mus musculus domesticus DNA, BAC clone: B6Ng01-025B22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(37,367,630 - 37,367,951)(37,781,180 - 37,781,785)
sequence
gaattcagagatctccttgtcttttttttttttttaagatttatttattt
attatatgtaagtacattgtagctgtcttcagacattccagaagagggtg
tcagatctcattacagatggttgtgaaccaccatgtggttgctgggattt
gaactcaggacctttggtgctcttaactgctgagccatctctgcagcctg
agatctccttgtcttaatattctgggattcatatccactatgcctcaaga
tctccatgtcaagatccaggtcagaaacttgtatcttccagcctccagat
tagtatcacaggtgagccttccaattctggattgtagtttatcccagata
tagtcaagttgacaaccaggaatagccactaaacccagcaaagggttgat
tctattgtcctcacagattctatgagttaggaaatctaacagagaagaaa
aaggggagctcaactctaatttgtgaggtctggccctttgccagcaagaa
agttcgtgaaacaaaggctgagggttggaatctcctggcgagatcggcca
cagttgtatctgtcagttgatggctgggcacacctactcatggtctctcg
gtggagtctctgttcagaactatttgggcttcttcagaacatagtagctg
tcttccaagagccattgtccccagagatgagggccaaaggcttgtgagat
gtttctgagcaggctctagggttcaggctgaaatcagaatgtggggtggg
gtg
gaattcaagtcaaccctggtctacagagtgagttccacaacaaccagggc
tacaagccctgtcttggagagagagagagagagagagagagagagagaga
gagagagagagagaaaggaaggagagagagagagagagagagagagagag
agagaaagtggagattattatagacttagatagataaatgaattagagtc
agtattaaaagccaattcactcatttagctaaattgatttctgtgaaaaa
tcctcaaacagttcattaagaaggactcaaataagatcttagtaatcttt
tgtttttcttttattggatattttatttatttacatttcaattgttatcc
ccttttctggtttccccttcacaaaccctgtattccatgccttctccacc
tgcttctatgagggtgctccctaaccaatgcacccactccagctacccta
ccctggcattcccctacactgggacatatagcctttaaaggaccaagggc
ctctctgaccattgatgtcctacatcctctgctacatatgaggctggaca
catgggttcccccattagtactctttggttggtggtttagtccctctgag
ctctggggtgggggtccagttggttgatattgttcttcctgtggtgttgc
aaacctcttcagctcctaccctccttttcctaactccctccatttgggga
ccacattctctgtccaatgggaggctgtaaacgtctgccctctgtatctt
aagactctgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_37367630_37367951
seq2: B6Ng01-025B22.b_67_240 (reverse)

seq1  GGCTGCAGAGATGGCTCAGCAGTAACTCCATGCCCTCTTCTGATGTGGTG  50
                                                        
seq2  --------------------------------------------------  0

seq1  TACATGCATGCATGCAGGCAAAACAGTCATGTATATAAAATAAAAATATG  100
                                                        
seq2  --------------------------------------------------  0

seq1  TGAAGCTTTAAGAAAAGAACAGATCTGGGGGGCTGGTGAGATGGCTCAGT  150
                                    |||||  |||||||||||| 
seq2  ------------------------------GGCTGCAGAGATGGCTCAGC  20

seq1  GGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCGAAGTTCAAATCCCAG  200
       | ||||||||             || |||||||  ||||||||||||||
seq2  AGTTAAGAGCA-------------CCAAAGGTCCTGAGTTCAAATCCCAG  57

seq1  CAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGATGCCCTCTT  250
      |||||||||||||| ||||||||||||||||||||||||||  |||||||
seq2  CAACCACATGGTGGTTCACAACCATCTGTAATGAGATCTGACACCCTCTT  107

seq1  CTGGTGCATCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATA  300
      ||||    |||||||||||||||| |||||||||||||    ||||||||
seq2  CTGGAATGTCTGAAGACAGCTACAATGTACTTACATAT----AATAAATA  153

seq1  AATAAATCTTTAAAAAAAAAAA  322
      |||||||||| |||||||||| 
seq2  AATAAATCTTAAAAAAAAAAA-  174

seq1: chr12_37781180_37781785
seq2: B6Ng01-025B22.g_220_828

seq1  AGAAAGTGGGTATTATTATAGACTTAGATAGATAAATGAATTAGAGTCAG  50
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTGGAGATTATTATAGACTTAGATAGATAAATGAATTAGAGTCAG  50

seq1  TATTAAAAGCCAATTCACTCATTTAGCTAAATTGATTTCTGTGAAAAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAAGCCAATTCACTCATTTAGCTAAATTGATTTCTGTGAAAAATC  100

seq1  CTCAAACAGTTCATTAGGAAGGACTCAGATAAGATCTTAGTAATCTTTTG  150
      |||||||||||||||| |||||||||| ||||||||||||||||||||||
seq2  CTCAAACAGTTCATTAAGAAGGACTCAAATAAGATCTTAGTAATCTTTTG  150

seq1  TTTTTCTTTTATTGGATATTTTATTTATTTACATTTCAATTGTTATCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTTATTGGATATTTTATTTATTTACATTTCAATTGTTATCCCC  200

seq1  TTTTCTGGTTTCCCCTTCAGAAACCCTGTATTCCATGCCTTCTCCACCTG  250
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTTCTGGTTTCCCCTTCACAAACCCTGTATTCCATGCCTTCTCCACCTG  250

seq1  CTTCTATGAGGGTGCTCCCTAACCAATGCACCCACTCCAGCTACCCTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATGAGGGTGCTCCCTAACCAATGCACCCACTCCAGCTACCCTACC  300

seq1  CTGGCATTCCCCTACACTGGGACATAGAGCCTTTAAAGGACCAAGGGCCT  350
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTGGCATTCCCCTACACTGGGACATATAGCCTTTAAAGGACCAAGGGCCT  350

seq1  CTCTGACCATTGATGTCCTACATCCTCTGCTACATATGAGGCTGGACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACCATTGATGTCCTACATCCTCTGCTACATATGAGGCTGGACACA  400

seq1  TGGGTTCCTCCATTAGTACTCTTTGGTTGGTGGTTTAGTCCCTCTGAGCT  450
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCCCCCATTAGTACTCTTTGGTTGGTGGTTTAGTCCCTCTGAGCT  450

seq1  CTGGGGTGGGGGTCCAGTTGGTTGATATTGTTCTTCCTGTGGTGTTGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTGGGGGTCCAGTTGGTTGATATTGTTCTTCCTGTGGTGTTGCAA  500

seq1  ACCTCTTCAGCTCCTTCAGTCCTTTTCCTAACT-CCTCCATTT-GGGACC  548
      ||||||||||||||| |  |||||||||||||| ||||||||| ||||||
seq2  ACCTCTTCAGCTCCTACCCTCCTTTTCCTAACTCCCTCCATTTGGGGACC  550

seq1  CCATTCTCTGTCCAATGGTTGGCTGTGAGCATCTG-CCTCTGTATCTTAA  597
       |||||||||||||||||  |||||| | | |||| ||||||||||||||
seq2  ACATTCTCTGTCCAATGGGAGGCTGTAAACGTCTGCCCTCTGTATCTTAA  600

seq1  GTCTCTGTA  606
      | |||||||
seq2  GACTCTGTA  609