BAC Information

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BAC

Clone NameB6Ng01-025C02
Chromosome3 (Build37)
Map Location 145,297,869 - 145,428,166
singlet/doubletdoublet
Overlap geneCyr61, Ddah1
Upstream geneSh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1, 2410019A14Rik
Downstream geneLOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025C02.bB6Ng01-025C02.g
ACCDH856567DH856568
length1,1471,125
definitionDH856567|Mus musculus domesticus DNA, BAC clone: B6Ng01-025C02, 5' end.DH856568|Mus musculus domesticus DNA, BAC clone: B6Ng01-025C02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,427,001 - 145,428,166)(145,297,869 - 145,299,004)
sequence
gaattcaaatacacgcaaaagtaatggcccagcatgtgtgagctgcaagc
catcctgccttctcctctaaagggtctatatttgtggcagggagctcgtt
ttcagctaatggtctttaatgaaagtcagtcctggctctttgttttgtac
ttcatttccaaagcctttgaggcccgctgcacaggaacaggttgcattcc
tggccacacctctgtctctgatacacaccaattttctaatgttcctgcca
agcccatgtagaaaggttgaaaaggagacctgaaaagaagcagctgggtt
gagagcatgctccccagtgcagcccctccccaccagtgacagccagcggg
gtctctcggtatggccagtcacacggaagtttgagggcgtgtgtgtgtaa
gaagcaaacatctacaacagttatgaacaaactctgcaggacaacttagg
aggtttgtataaatggcattgttattatagactcatttttacctgtctga
gggcatgttttgcctgcatgtaactatgagcacaagcctgctgctggagg
tcagaaaatggtgtctgatcccaggagttggccatcacgtggggttggga
actgaacctaagtcctctgcaagagcaacaagtgttcttagttgttgagc
tatctctgcagtgccagaaccagcccaaggacaggttacattactagcca
ttattacctttaaactaagatgaaaacaaaactgctctcctttatgagag
ataggaagaaaatgaatcacttagttaaagtccttcataatactaatggg
taaagtggaacccaagcagtcagtctgtgtctgttgaatgctctgtgggg
ctcagccaccagcaacaaccacttgatgcaagcaagcaacaagtcttgtg
ttttcaggaaactccatttctggaacttatagttgtctgggactttagtt
acattacttacccaagttattgatctagatttccttgacttttaacagtg
tgcacaggccatctttcaggttccacacacttgagtattggctttggtta
ctgctactgtcggcacagcttgctgttcacatgcctctgaggcacgtaag
aactcaaggcgaatcgtacggttcgattctatatgtctttacttaag
gaattctcccgatgcttttgaaaagggagtcattacatgtttgaactaaa
agtgtggaccttgggggcaactggaaaggcttaggaggtgggacgaaggt
tttttgctcttcgctagctgtgaggcacagagaaggttatgaggtcctaa
gaaccccactttccctgcttgtgagctggaaatgatgggttgtgcatgaa
tcataaaccataaacatgtaaacaaggagataccagcagctgtatcttcg
ttaccacgccaccatcaccatcactcctaccaacatcactgggattgccc
atctccaaaaaaaccgttgaattgtataaagacacaattgcctttcctct
ggaatatataacagtgagatgtagtaagaatgaaccagtagtccaggcct
attatcccagctactacagagtctgaggctggaagattgcctcacatggc
ctgcctaggctagagtgaattctaagctggcctaggcaccgtactgacgc
tcagtctaaaggtgaaaactgggagctggagagatcgttcggtgcttagg
agcctattctgccctcccaaaggactggagttcagttcttagcaccaata
ttagacagcttgccattgtctgagactccagatctagggggtctgactcc
tctcgcctctgtaggtaccaaaactcacatgcacagaccagtccccatgc
tacacacacattattagaaaaaaaatccttaaaattaaaaaatgggggga
aaggcttaggcttaaggatatatagctgagtggtagagtccttgtctagt
ccttccggaggatctaggtttaatcccagtgccaatcaattaataaatca
attaacaataaatagaggaagaggagaaccctatgggcacaatgaacaac
ctctccaagtgactttgacaagttccctcctgtatctcttggttttgaag
ctgactggttttgctcctgaggcactagtaagtgtagcaatcagtgctta
gtagactcctgtaccagcgtgtctgtttgagcgcctcttacttagaagcc
agttctttgccatgagaagcttagtttaaggctagctggcatgggtgata
ttgctttatccagtacttctgtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_145427001_145428166
seq2: B6Ng01-025C02.b_44_1190 (reverse)

seq1  CTTATGTAAGGACATATAGGCATCAGGACCCGTACGTTTTCGCCCTGAGT  50
      |||| |||| |||||||| | |||  || |||||||  |||||| |||| 
seq2  CTTAAGTAAAGACATATA-GAATC--GAACCGTACG-ATTCGCCTTGAG-  45

seq1  TTCTTACGTTGCCTCTAGAGGCAATGTGAACAGCAAGCTTGTGCCGAACA  100
      |||||||| |||||| |||||| ||||||||||||||| ||||||| |||
seq2  TTCTTACG-TGCCTC-AGAGGC-ATGTGAACAGCAAGC-TGTGCCG-ACA  90

seq1  GTAGCAGGTAACCAAAGCCAAATACTCAAGTGTGTGGACCCTGAAAGATG  150
      |||||| |||||||||||| |||||||||||||||||| |||||||||||
seq2  GTAGCA-GTAACCAAAGCC-AATACTCAAGTGTGTGGAACCTGAAAGATG  138

seq1  GCCCTGTTGCCACACTTGTTAAAAGTCAAGGAAATCTAGATTCAATAACT  200
      | |||||   ||||| |||||||||||||||||||||||| |||||||||
seq2  G-CCTGT--GCACAC-TGTTAAAAGTCAAGGAAATCTAGA-TCAATAACT  183

seq1  TGGGTAAGTAATGTAACTAAAGTCCCAGACAACTTATAAGTTCCAGAAAT  250
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGGGTAAGTAATGTAACTAAAGTCCCAGACAAC-TATAAGTTCCAGAAAT  232

seq1  GGAGTTTTCCTGAAAACACAAGACTTGTTGCTTGCTTGCATCAAGTGGTT  300
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAG-TTTCCTGAAAACACAAGACTTGTTGCTTGCTTGCATCAAGTGGTT  281

seq1  GTTGCTGGTGGCTGAGCCCCACAGAGCATTCAACAGACACAGACTGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGGTGGCTGAGCCCCACAGAGCATTCAACAGACACAGACTGACTG  331

seq1  CTTGGGTTCCACTTTACCCATTAGTATTATGAAGGACTTTAACTAAGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTTCCACTTTACCCATTAGTATTATGAAGGACTTTAACTAAGTGA  381

seq1  TTCATTTTCTTCCTATCTCTCATAAAGGAGAGCAGTTTTGTTTTCATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTCTTCCTATCTCTCATAAAGGAGAGCAGTTTTGTTTTCATCTT  431

seq1  AGTTTAAAGGTAATAATGGCTAGTAATGTAACCTGTCCTTGGGCTGGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAAGGTAATAATGGCTAGTAATGTAACCTGTCCTTGGGCTGGTTC  481

seq1  TGGCACTGCAGAGATAGCTCAACAACTAAGAACACTTGTTGCTCTTGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTGCAGAGATAGCTCAACAACTAAGAACACTTGTTGCTCTTGCAG  531

seq1  AGGACTTAGGTTCAGTTCCCAACCCCACGTGATGGCCAACTCCTGGGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTAGGTTCAGTTCCCAACCCCACGTGATGGCCAACTCCTGGGATC  581

seq1  AGACACCATTTTCTGACCTCCAGCAGCAGGCTTGTGCTCATAGTTACATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCATTTTCTGACCTCCAGCAGCAGGCTTGTGCTCATAGTTACATG  631

seq1  CAGGCAAAACATGCCCTCAGACAGGTAAAAATGAGTCTATAATAACAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAAACATGCCCTCAGACAGGTAAAAATGAGTCTATAATAACAATG  681

seq1  CCATTTATACAAACCTCCTAAGTTGTCCTGCAGAGTTTGTTCATAACTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTATACAAACCTCCTAAGTTGTCCTGCAGAGTTTGTTCATAACTGT  731

seq1  TGTAGATGTTTGCTTCTTACACACACACGCCCTCAAACTTCCGTGTGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATGTTTGCTTCTTACACACACACGCCCTCAAACTTCCGTGTGACT  781

seq1  GGCCATACCGAGAGACCCCGCTGGCTGTCACTGGTGGGGAGGGGCTGCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATACCGAGAGACCCCGCTGGCTGTCACTGGTGGGGAGGGGCTGCAC  831

seq1  TGGGGAGCATGCTCTCAACCCAGCTGCTTCTTTTCAGGTCTCCTTTTCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGCATGCTCTCAACCCAGCTGCTTCTTTTCAGGTCTCCTTTTCAA  881

seq1  CCTTTCTACATGGGCTTGGCAGGAACATTAGAAAATTGGTGTGTATCAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTACATGGGCTTGGCAGGAACATTAGAAAATTGGTGTGTATCAGA  931

seq1  GACAGAGGTGTGGCCAGGAATGCAACCTGTTCCTGTGCAGCGGGCCTCAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGGTGTGGCCAGGAATGCAACCTGTTCCTGTGCAGCGGGCCTCAA  981

seq1  AGGCTTTGGAAATGAAGTACAAAACAAAGAGCCAGGACTGACTTTCATTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTGGAAATGAAGTACAAAACAAAGAGCCAGGACTGACTTTCATTA  1031

seq1  AAGACCATTAGCTGAAAACGAGCTCCCTGCCACAAATATAGACCCTTTAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCATTAGCTGAAAACGAGCTCCCTGCCACAAATATAGACCCTTTAG  1081

seq1  AGGAGAAGGCAGGATGGCTTGCAGCTCACACATGCTGGGCCATTACTTTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAGGCAGGATGGCTTGCAGCTCACACATGCTGGGCCATTACTTTT  1131

seq1  GCGTGTATTTGAATTC  1166
      ||||||||||||||||
seq2  GCGTGTATTTGAATTC  1147

seq1: chr3_145297869_145299004
seq2: B6Ng01-025C02.g_67_1191

seq1  GAATTCTCCCGATGCTTTTGAAAAGGGAGTCATTACATGTTTGAACTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCGATGCTTTTGAAAAGGGAGTCATTACATGTTTGAACTAAA  50

seq1  AGTGTGGACCTTGGGGGCAACTGGAAAGGCTTAGGAGGTGGGACGAAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGACCTTGGGGGCAACTGGAAAGGCTTAGGAGGTGGGACGAAGGT  100

seq1  TTTTTGCTCTTCGCTAGCTGTGAGGCACAGAGAAGGTTATGAGGTCCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTCTTCGCTAGCTGTGAGGCACAGAGAAGGTTATGAGGTCCTAA  150

seq1  GAACCCCACTTTCCCTGCTTGTGAGCTGGAAATGATGGGTTGTGCATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCCACTTTCCCTGCTTGTGAGCTGGAAATGATGGGTTGTGCATGAA  200

seq1  TCATAAACCATAAACATGTAAACAAGGAGATACCAGCAGCTGTATCTTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAACCATAAACATGTAAACAAGGAGATACCAGCAGCTGTATCTTCG  250

seq1  TTACCACGCCACCATCACCATCACTCCTACCAACATCACTGGGATTGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCACGCCACCATCACCATCACTCCTACCAACATCACTGGGATTGCCC  300

seq1  ATCTCCAAAAAAACCGTTGAATTGTATAAAGACACAATTGCCTTTCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCAAAAAAACCGTTGAATTGTATAAAGACACAATTGCCTTTCCTCT  350

seq1  GGAATATATAACAGTGAGATGTAGTAAGAATGAACCAGTAGTCCAGGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATATAACAGTGAGATGTAGTAAGAATGAACCAGTAGTCCAGGCCT  400

seq1  ATTATCCCAGCTACTACAGAGTCTGAGGCTGGAAGATTGCCTCACATGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCCAGCTACTACAGAGTCTGAGGCTGGAAGATTGCCTCACATGGC  450

seq1  CTGCCTAGGCTAGAGTGAATTCTAAGCTGGCCTAGGCACCGTACTGACGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTAGGCTAGAGTGAATTCTAAGCTGGCCTAGGCACCGTACTGACGC  500

seq1  TCAGTCTAAAGGTGAAAACTGGGAGCTGGAGAGATCGTTCGGTGCTTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTAAAGGTGAAAACTGGGAGCTGGAGAGATCGTTCGGTGCTTAGG  550

seq1  AGCCTATTCTGCCCTCCCAAAGGACTGGAGTTCAGTTCTTAGCACCAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTATTCTGCCCTCCCAAAGGACTGGAGTTCAGTTCTTAGCACCAATA  600

seq1  TTAGACAGCTTGCCATTGTCTGAGACTCCAGATCTAGGGGGTCTGACTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAGCTTGCCATTGTCTGAGACTCCAGATCTAGGGGGTCTGACTCC  650

seq1  TCTCGCCTCTGTAGGTACCAAAACTCACATGCACAGACCAGTCCCCATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGCCTCTGTAGGTACCAAAACTCACATGCACAGACCAGTCCCCATGC  700

seq1  TACACACACATTATTAGAAAAAAAATCCTTAAAATTAAAAAATGGGGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACATTATTAGAAAAAAAATCCTTAAAATTAAAAAATGGGGGGA  750

seq1  AAGGCTTAGGCTTAAGGATATATAGCTGAGTGGTAGAGTCCTTGTCTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTAGGCTTAAGGATATATAGCTGAGTGGTAGAGTCCTTGTCTAGT  800

seq1  CCTTCCGGAGGATCTAGGTTTAATCCCAGTGCCAATCAATTAATAAATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCGGAGGATCTAGGTTTAATCCCAGTGCCAATCAATTAATAAATCA  850

seq1  ATTAACAATAAATAGAGGAAGAGGAGAACCCTATGGGCACAATGAACAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACAATAAATAGAGGAAGAGGAGAACCCTATGGGCACAATGAACAAC  900

seq1  CTCTCCAAGTGACTTTGACAAGTTCCCTCCTGTATCTCTTGGTTTTGAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAAGTGACTTTGACAAGTTCCCTCCTGTATCTCTTGGTTTTGAAG  950

seq1  CTGACTGGTTTTGCTCCTTGAGGCACTAGTAAGTGTAAGGCAATCAGTGC  1000
      ||||||||||||||||| |||||||||||||||||||  |||||||||||
seq2  CTGACTGGTTTTGCTCC-TGAGGCACTAGTAAGTGTA--GCAATCAGTGC  997

seq1  TTAGTAGGACTCCTGTACCAGGCGTTGTCCTGTTTGAGCG-CTCTACCTT  1049
      |||||| ||||||||||||| ||| ||| ||||||||||| ||||  |||
seq2  TTAGTA-GACTCCTGTACCA-GCG-TGT-CTGTTTGAGCGCCTCTTACTT  1043

seq1  AGAAGCCAGTTCTCTGCCATGAAGAAGCTTAGTTT-AGGCTAGGCTGGGC  1098
      ||||||||||||| ||||||| ||||||||||||| |||||| ||| |||
seq2  AGAAGCCAGTTCTTTGCCATG-AGAAGCTTAGTTTAAGGCTA-GCT-GGC  1090

seq1  AT-GGTGATATTGGCCTTTAATCCCAGTACTTCTGTGGG  1136
      || ||||||||||  |||||   ||||||||||||||||
seq2  ATGGGTGATATTG--CTTTA--TCCAGTACTTCTGTGGG  1125