BAC Information

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BAC

Clone NameB6Ng01-025E20
Chromosome3 (Build37)
Map Location 153,234,647 - 153,331,607
singlet/doubletdoublet
Overlap geneSt6galnac3
Upstream geneAk5, LOC100040705, Pigk, Rpl29-ps1, St6galnac5, LOC100040750
Downstream geneEG545578, Asb17, Msh4, Rabggtb, Acadm, Slc44a5, LOC100040980, Lhx8, LOC100040810, LOC100040829, Tyw3, Cryz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025E20.bB6Ng01-025E20.g
ACCDH856693DH856694
length1,096102
definitionDH856693|Mus musculus domesticus DNA, BAC clone: B6Ng01-025E20, 5' end.DH856694|Mus musculus domesticus DNA, BAC clone: B6Ng01-025E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,234,647 - 153,235,812)(153,331,507 - 153,331,607)
sequence
gaattcaaactctaaggcagacgcagtgctgggcactgctgttcagttac
tttgtctgtcttcagtagacaccggtcatggcgccctttctccctagagt
cctccccacggtgatctataaactgtaaagtgctagtgctttaaaatgat
tttaaagcaagccctggaattacattaagggcttatccgagccagaagga
ggctgatgatggtcaggaggaaccgacgcagaagggtcacgtaaccattt
ccggtcggcagtggagccactccgccccctcttaccaatgaatccctgtc
catatagacctcaaagtgctcagcctgctcgctgtctgcgggtttggcct
cctgaccagacgtttccattaccgcagctgctgtttgtaagcgtgtagca
gccctgcgtcttaatgcttctcaccacacgcttaatttttttttcttctc
ctagaagaaattatggccatttcggctgagtgtccccattctgtattctt
tcagagctcgtattcatcttttattttcctgaatgaggtttggtttatag
catataagataggaaaacaggattgaaaaggctgggagaatataaatctt
cccttggaaacaaaatgctctcagcgcattttaaagacttcagagttttt
ttgacgccctcattcactggagaattttggaggaagtaaaatccgagaat
ccctctccctcttccccccgccactcccctatctctctctttcacacaca
cacagaaataaaaaaatttaaaagccagccatatagcctgattattccat
gtcttccagtacactgtgtgttccgtcagacactccatgttggaaaggtt
tccatgtctcgctgggttgcacatttcctttttccagccaagttcagata
ctcgaggacagagctacaccctaaccatgcggagaggtctattacatcat
ggtggtctattacatcatgaggtctatacatcatggatcgcttaggcaat
ccagagctccacggtgtggtactctgggactcgtgctttcccagtctacc
ccactcgagcccttcatgtcacaataactgattcttactagccaca
agcagtccttagtctgtatctgtactgaccggtatttgcgtgaaagccgc
attgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_153234647_153235812
seq2: B6Ng01-025E20.b_32_1127

seq1  GAATTC-AACTCTAAGGCAGACGCAGTGCTGGGCACTGCTGTTCAGTTAC  49
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTCTAAGGCAGACGCAGTGCTGGGCACTGCTGTTCAGTTAC  50

seq1  TTTGTCTGTCTTCAGTAGACACCGGTCATGGCGCCCTTTCTCCCTAGAGT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTGTCTTCAGTAGACACCGGTCATGGCGCCCTTTCTCCCTAGAGT  100

seq1  CCTCCCCACGGTGATCTATAAACTGTAAAGTGCTAGTGCTTTAAAATGAT  149
      ||||||||||||||||||||||||||||||||||||              
seq2  CCTCCCCACGGTGATCTATAAACTGTAAAGTGCTAG--------------  136

seq1  TTTAAAGCAAGCCCTGGAATTACATTAAGGGCTTGCTTTAAAATGATTTT  199
                                       |||||||||||||||||
seq2  ---------------------------------TGCTTTAAAATGATTTT  153

seq1  AAAGCAAGCCCTGGAATTACATTAAGGGCTTATCCGAGCCAGAAGGAGGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAGCCCTGGAATTACATTAAGGGCTTATCCGAGCCAGAAGGAGGC  203

seq1  TGATGATGGTCAGGAGGAACCGACGCAGAAGGGTCACGTAACCATTTCCG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATGGTCAGGAGGAACCGACGCAGAAGGGTCACGTAACCATTTCCG  253

seq1  GTCGGCAGTGGAGCCACTCCGCCCCCTCTTACCAATGAATCCCTGTCCAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGCAGTGGAGCCACTCCGCCCCCTCTTACCAATGAATCCCTGTCCAT  303

seq1  ATAGACCTCAAAGTGCTCAGCCTGCTCGCTGTCTGCGGGTTTGGCCTCCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACCTCAAAGTGCTCAGCCTGCTCGCTGTCTGCGGGTTTGGCCTCCT  353

seq1  GACCAGACGTTTCCATTACCGCAGCTGCTGTTTGTAAGCGTGTAGCAGCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGACGTTTCCATTACCGCAGCTGCTGTTTGTAAGCGTGTAGCAGCC  403

seq1  CTGCGTCTTAATGCTTCTCACCACACGCTTAATTTTTTTTTCTTCTCCTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTCTTAATGCTTCTCACCACACGCTTAATTTTTTTTTCTTCTCCTA  453

seq1  GAAGAAATTATGGCCATTTCGGCTGAGTGTCCCCATTCTGTATTCTTTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAATTATGGCCATTTCGGCTGAGTGTCCCCATTCTGTATTCTTTCA  503

seq1  GAGCTCGTATTCATCTTTTATTTTCCTGAATGAGGTTTGGTTTATAGCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCGTATTCATCTTTTATTTTCCTGAATGAGGTTTGGTTTATAGCAT  553

seq1  ATAAGATAGGAAAACAGGATTGAAAAGGCTGGGAGAATATAAATCTTCCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATAGGAAAACAGGATTGAAAAGGCTGGGAGAATATAAATCTTCCC  603

seq1  TTGGAAACAAAATGCTCTCAGCGCATTTTAAAGACTTCAGAGTTTTTTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAACAAAATGCTCTCAGCGCATTTTAAAGACTTCAGAGTTTTTTTG  653

seq1  ACGCCCTCATTCACTGGAGAATTTTGGAGGAAGTAAAATCCGAGAATCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCTCATTCACTGGAGAATTTTGGAGGAAGTAAAATCCGAGAATCCC  703

seq1  TCTCCCTCTTCCCCCCGCCACTCCCCTATCTCTCTCTTTCACACACACAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCTTCCCCCCGCCACTCCCCTATCTCTCTCTTTCACACACACAC  753

seq1  AGAAATAAAAAAATTTAAAAAGCCAGCCATATAGCCTGATTATTCCAATG  849
      |||||||||||||||| ||||||||||||||||||||||||||||| |||
seq2  AGAAATAAAAAAATTT-AAAAGCCAGCCATATAGCCTGATTATTCC-ATG  801

seq1  TCTTCCAGTACACTGTGTGTTCCGTCAGACACTCCATGTTGGAAAGGTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCTTCCAGTACACTGTGTGTTCCGTCAGACACTCCATGTTGGAAAGG-TT  850

seq1  TCCATGTCTCGCTGGGTTTGCACATTCCTTTTTTCCAGCCAAAGTTCAGA  949
      |||||||||||||||| ||||||||| | ||||||||||| |||||||||
seq2  TCCATGTCTCGCTGGG-TTGCACATTTCCTTTTTCCAGCC-AAGTTCAGA  898

seq1  TACCTCGAGGACAGAGCTACACCCTAACCATGCGGTAGAGGTCTATTACA  999
      || |||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TA-CTCGAGGACAGAGCTACACCCTAACCATGCGG-AGAGGTCTATTACA  946

seq1  TCATGGTGGTCTATTACATCATGGAGGTCTATTACATCATGGATCGCTTA  1049
      |||||||||||||||||||||| |||||||| ||||||||||||||||||
seq2  TCATGGTGGTCTATTACATCAT-GAGGTCTA-TACATCATGGATCGCTTA  994

seq1  GGCAAATCCCAGAGCTCCACTGGTGTGGGTACTCTGGGACTCGGTGCTTT  1099
      |||||   |||||||||||| ||||| ||||||||||||||| |||| ||
seq2  GGCAA--TCCAGAGCTCCAC-GGTGT-GGTACTCTGGGACTC-GTGC-TT  1038

seq1  TCCCAGGCTACCCCACTCCAGAGGGCCCTTCATGTCACCATAAAACTGAT  1149
      |||||| |||||||||||    | |||||||||||||| ||  |||||| 
seq2  TCCCAGTCTACCCCACTC----GAGCCCTTCATGTCACAAT--AACTGA-  1081

seq1  TTCTTTACCTAGCCACA  1166
      |||||   |||||||||
seq2  TTCTT--ACTAGCCACA  1096

seq1: chr3_153331507_153331607
seq2: B6Ng01-025E20.g_72_172 (reverse)

seq1  ACACACACACACACACACACACACACACACACACACACACGCACACGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACGCACACGCAA  50

seq1  TGCGGCTTTCACGCAAATACCGGTCAGTACAGATACAGACTAAGGACTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGCTTTCACGCAAATACCGGTCAGTACAGATACAGACTAAGGACTGC  100

seq1  T  101
      |
seq2  T  101