BAC Information

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BAC

Clone NameB6Ng01-025I06
Chromosome3 (Build37)
Map Location 24,770,472 - 24,771,292
singlet/doubletsinglet
Overlap genenone
Upstream geneEG635702, EG665189
Downstream geneLOC100039592, Nlgn1, LOC621017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025I06.bB6Ng01-025I06.g
ACCDH856841DH856842
length1,057824
definitionDH856841|Mus musculus domesticus DNA, BAC clone: B6Ng01-025I06, 5' end.DH856842|Mus musculus domesticus DNA, BAC clone: B6Ng01-025I06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaataccaaatggctttagaagcacctaaagaaat
attcaacatccttagtcatcagagaaatgcaaataaaaacaaccctgaga
ttccatctcataccagtcagaatctctaagatcaaaaacccaggtgacag
cagatgctgatgaggatgtggagaaagagaaatactcctctactgctggt
aggattgcaagcttgtacaaccactctggaggtcagtttggtggttcctc
agaaaattgcacatagtattacttgaggacccagcaataccactcctggg
catatacccagaatatgctccaacatgtaataaggacacatgctccacta
tgttaatagcagccttatttataatagccagaagctggaaagaacccaga
tgtttctcaacagaggaatggatacagaaaatgtgatacattcacacaat
ggaatactactcagctattaaaaacaatgaattcatgaaattcttaggca
aatggatgaaactagaaaatatctccctgagtgaggtaacctaaccacaa
aagaacgcacatggtatgtactcactgataagtggatattagatcagaag
ctcagaatactcaagatacaattcacagaccacatgaagctcaacatgaa
cggaagaccaaagtgtggatacttttgttccttcttagaagggggaataa
aatacctttggggagaagatacagaggcaaagtgtggagcagagactgaa
ggaaatgccattcagagactgcccctctctgggatctatcccatatagtc
accaaacccagacactactgtggatgccaacggtgcttgctgacaggagc
ccttatatcgcttttcctgagaggctctgccatgcctggaaaatacagaa
gtgatgctctcagccaaccatgggctgagcacagggtccatatttcttta
ataaatttcaagtgttttgcctttctaattcctctctgaaacccctattc
ctcctccctccctggtcacatctcctaatttttctgatttcttgccttgt
attccct
gaattcagagaccaccatagaggagttagtggaaggatttaaggagcaga
aagaaatggcaaccccatagaaaaaccaacagactcagctaacccggacc
cctaggagctcccagagactgagccatcaaccaaagagcatacatgggct
tgtctgaggcctccagcatattggttgcagaggactgactactgccttgt
ttggcctcagttggagaggatgtgcctaatgctgtagagacttgaggccc
cagggaaaggggatgcccaagggtggggtaagagggggagcaccatctgt
ctcaaagaggagtggtaatgggatgaagaactgtgggaaggggatgggag
gtgcaatgtctgggatgtaaataaaatcagtaattaaattatatatgtcc
cactatgtttttcattctaaatatcatcatagaacaggcattttctaatt
accttgtgaactatcagatgtctttaaatggcaagtgcatctctcagaat
gagttatatcaaaatcatttaaatttaccaattatatctatatgatgaga
tcccaaatcaagaagcatgtgtatagaatgattatttcctccaaccacat
tgttctgttaaaaaaagtaaaaagaatgaaaaactcaaacacggctccct
gtttcgttccaacttggagacatatttcttacagatataaggcatttctt
ttaagatagggatcttactcttccccgggtctgatggaaactgacaagca
tacttttccttcccattttaaagatatgaatgctcataacaccaaaaggg
tgaaaagaaaattgtatataacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_24770472_24771292
seq2: B6Ng01-025I06.g_66_889

seq1  GAATTCAGAGACCACCATAGAGGAGTTAGTGGAAGGATTTAAGGAGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGACCACCATAGAGGAGTTAGTGGAAGGATTTAAGGAGCAGA  50

seq1  AAGAAATGGCAACCCCATAGAAAAACCAACAGACTCAGCTAACCCGGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGGCAACCCCATAGAAAAACCAACAGACTCAGCTAACCCGGACC  100

seq1  CCTAGGAGCTCCCAGAGACTGAGCCATCAACCAAAGAGCATACATGGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGAGCTCCCAGAGACTGAGCCATCAACCAAAGAGCATACATGGGCT  150

seq1  TGTCTGAGGCCTCCAGCATATTGGTTGCAGAGGACTGACTACTGCCTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAGGCCTCCAGCATATTGGTTGCAGAGGACTGACTACTGCCTTGT  200

seq1  TTGGCCTCAGTTGGAGAGGATGTGCCTAATGCTGTAGAGACTTGAGGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTCAGTTGGAGAGGATGTGCCTAATGCTGTAGAGACTTGAGGCCC  250

seq1  CAGGGAAAGGGGATGCCCAAGGGTGGGGTAAGAGGGGGAGCACCATCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAAGGGGATGCCCAAGGGTGGGGTAAGAGGGGGAGCACCATCTGT  300

seq1  CTCAAAGAGGAGTGGTAATGGGATGAAGAACTGTGGGAAGGGGATGGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGAGGAGTGGTAATGGGATGAAGAACTGTGGGAAGGGGATGGGAG  350

seq1  GTGCAATGTCTGGGATGTAAATAAAATCAGTAATTAAATTATATATGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAATGTCTGGGATGTAAATAAAATCAGTAATTAAATTATATATGTCC  400

seq1  CACTATGTTTTTCATTCTAAATATCATCATAGAACAGGCATTTTCTAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGTTTTTCATTCTAAATATCATCATAGAACAGGCATTTTCTAATT  450

seq1  ACCTTGTGAACTATCAGATGTCTTTAAATGGCAAGTGCATCTCTCAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTGAACTATCAGATGTCTTTAAATGGCAAGTGCATCTCTCAGAAT  500

seq1  GAGTTATATCAAAATCATTTAAATTTACCAATTATATCTATATGATGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATATCAAAATCATTTAAATTTACCAATTATATCTATATGATGAGA  550

seq1  TCCCAAATCAAGAAGCATGTGTATAGAATGATTATTTCCTCCAACCACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAATCAAGAAGCATGTGTATAGAATGATTATTTCCTCCAACCACAT  600

seq1  TGTTCTGTTAAAAAAAGT-AAAAGAATGAAAAACTC-AACACGGCTCCCT  648
      |||||||||||||||||| ||||||||||||||||| |||||||||||||
seq2  TGTTCTGTTAAAAAAAGTAAAAAGAATGAAAAACTCAAACACGGCTCCCT  650

seq1  GTTTCGTTCCAACTTGGAGACATATTTCTTACAGATATAAGGCA-TTCTT  697
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTTTCGTTCCAACTTGGAGACATATTTCTTACAGATATAAGGCATTTCTT  700

seq1  TTAAGATA-GGATCTTACTCTTCCCCGGGTCTGATGGAAACTGACAAGCA  746
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATAGGGATCTTACTCTTCCCCGGGTCTGATGGAAACTGACAAGCA  750

seq1  TACTTTTCCTTCCCATTTAAAAGATATGAATGCTCATAACAACAAAAAGG  796
      |||||||||||||||||| ||||||||||||||||||||| || ||||||
seq2  TACTTTTCCTTCCCATTTTAAAGATATGAATGCTCATAAC-ACCAAAAGG  799

seq1  TTGAAAAGAAAAATGTATATAACAA  821
       ||||||||||| ||||||||||||
seq2  GTGAAAAGAAAATTGTATATAACAA  824