BAC Information

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BAC

Clone NameB6Ng01-025L04
Chromosome3 (Build37)
Map Location 133,212,725 - 133,341,746
singlet/doubletdoublet
Overlap genenone
Upstream geneEG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd, Ints12, 9130221D24Rik, Ppa2, E130014J05Rik
Downstream geneEG620205, LOC100039168, LOC668862, LOC100039199, Cxxc4, Ppia-ps3_1390.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025L04.bB6Ng01-025L04.g
ACCDH856959DH856960
length1,205530
definitionDH856959|Mus musculus domesticus DNA, BAC clone: B6Ng01-025L04, 5' end.DH856960|Mus musculus domesticus DNA, BAC clone: B6Ng01-025L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,212,725 - 133,213,953)(133,341,211 - 133,341,746)
sequence
gaattcagagccagcttttgtgagtactgtgcattttttgagatctgccc
ctccccaggtgtggctaatctagcttttaaaagataatttactatccgaa
aaaaacagccgattgttatcagatcctgggctatgtctctaaaatgagaa
cgaagagttgcggctaccctactacagagccttcgcttccccacagagga
gggaaacgtgagtagcaggagcccaatgccatgctactttgtgtcaaaga
cttgacttgattggcctgagcatctgctgtctcagtcagttgttccccca
ccaagcttcatggagaacaggctgtctcctgtctgctgctgtccactgca
gtgtactgcaggtttggtttggttttgacttgatttttgttttgttttgt
ctttgttttgtattgtgctaataacaaagacaacagaccaacaaaaacta
tgcacactctcgctgttcttcctgcctgcagtgtagaacattgtttttaa
cgacctgaatttttttctttaagaattatgttacctacagctttgaaaga
attacagagatttcacagaaacattaaatcctaccctgtcatttcatagc
tctgagaacattttttttctgaagtatatacgacatgatagaggggttca
gcaatcttaaaagacacttgacggtcagggggcacagcacttttgctagg
aagctgcggtgctgttcttcctatcaaagggaagtagatagattgataga
atgctaatgagaagatattaccaatagataaaaatgtttgcacatagccc
cttagcctggtaatatgaatgaattatcaataatgataaaaaagtattgt
ttttctaaaaccagagatcacattgatatgagagtccagatagtcttctt
tgttactatgatctgaccttgtttgtcctggtttttgtataaactagtga
gattatttccctattccaatcatataaaacatcactggaggttatatgaa
gacatagatatattgggacaaatatcatgaaactctccagaaaaatttaa
tgtgtgctatatcatctcctgtaacttcagaaccttttttatttttatga
tttcatgtagaaatggcattgaattttttagtagtctagcggcttgacct
tcgaacctctcttcaagggctggaatttaagcaggacaatgcctgccttt
tcttt
ccaacagatgtggttgcctgctcaggagctgtacaagatcaagtcaacat
cctagcaaggaggagggaggagctctggagcccacaccccaaactgagga
gctattaatagcttgtggcttctgggagaggaagggtcaattttctttaa
agatgtgacccttagtctgtgaactatgctccagtgtatgacttcacacc
catgaaactgtgggcagcacgaactggacttagtgcattagaaaaataaa
tgaaaataagatggtataaagtttgaggaagtggagagaggatagatgta
ggaggagatgaggaaaaagcgagatggaacattgtcaaaatacattatat
gcatgtttgaaattctcaaatagtgaaaatatatcaaaagtattgcttcc
tggtggtgtatagaaataacagacattcaatgaatagttatgatgcccaa
gtaatgatacaaaaccgttttcacatcagtaagtatagttgtataaaaga
atatagagaagcatttcactgggctgtaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_133212725_133213953
seq2: B6Ng01-025L04.b_46_1250

seq1  GAATTCAGAGCCAGCTTTTGTGAGTACTGTGCATTTTTTGAGATCTGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGCCAGCTTTTGTGAGTACTGTGCATTTTTTGAGATCTGCCC  50

seq1  CTCCCCAGGTGTGGCTAATCTAGCTTTTAAAAGATAATTTACTATCCGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAGGTGTGGCTAATCTAGCTTTTAAAAGATAATTTACTATCCGAA  100

seq1  AAAAACAGCCGATTGTTATCAGATCCTGGGCTATGTCTCTAAAATGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGCCGATTGTTATCAGATCCTGGGCTATGTCTCTAAAATGAGAA  150

seq1  CGAAGAGTTGCGGCTACCCTACTACAGAGCCTTCGCTTCCCCACAGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGAGTTGCGGCTACCCTACTACAGAGCCTTCGCTTCCCCACAGAGGA  200

seq1  GGGAAACGTGAGTAGCAGGAGCCCAATGCCATGCTACTTTGTGTCAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACGTGAGTAGCAGGAGCCCAATGCCATGCTACTTTGTGTCAAAGA  250

seq1  CTTGACTTGATTGGCCTGAGCATCTGCTGTCTCAGTCAGTTGTTCCCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTTGATTGGCCTGAGCATCTGCTGTCTCAGTCAGTTGTTCCCCCA  300

seq1  CCAAGCTTCATGGAGAACAGGCTGTCTCCTGTCTGCTGCTGTCCACTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTTCATGGAGAACAGGCTGTCTCCTGTCTGCTGCTGTCCACTGCA  350

seq1  GTGTACTGCAGGTTTGGTTTGGTTTTGACTTGATTTTTGTTTTGTTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACTGCAGGTTTGGTTTGGTTTTGACTTGATTTTTGTTTTGTTTTGT  400

seq1  CTTTGTTTTGTATTGTGCTAATAACAAAGACAACAGACCAACAAAAACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTTGTATTGTGCTAATAACAAAGACAACAGACCAACAAAAACTA  450

seq1  TGCACACTCTCGCTGTTCTTCCTGCCTGCAGTGTAGAACATTGTTTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACTCTCGCTGTTCTTCCTGCCTGCAGTGTAGAACATTGTTTTTAA  500

seq1  CGACCTGAATTTTTTTCTTTAAGAATTATGTTACCTACAGCTTTGAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCTGAATTTTTTTCTTTAAGAATTATGTTACCTACAGCTTTGAAAGA  550

seq1  ATTACAGAGATTTCACAGAAACATTAAATCCTACCCTGTCATTTCATAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGAGATTTCACAGAAACATTAAATCCTACCCTGTCATTTCATAGC  600

seq1  TCTGAGAACATTTTTTTTCTGAAGTATATACGACATGATAGAGGGGTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAACATTTTTTTTCTGAAGTATATACGACATGATAGAGGGGTTCA  650

seq1  GCAATCTTAAAAGACACTTGACGGTCAGGGGGCACAGCACTTTTGCTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTTAAAAGACACTTGACGGTCAGGGGGCACAGCACTTTTGCTAGG  700

seq1  AAGCTGCGGTGCTGTTCTTCCTATCAAAGGGAAGTAGATAGATTGATAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCGGTGCTGTTCTTCCTATCAAAGGGAAGTAGATAGATTGATAGA  750

seq1  ATGCTAATGAGAAGATATTACCAATAGATAAAAATGTTTGCACATAGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAATGAGAAGATATTACCAATAGATAAAAATGTTTGCACATAGCCC  800

seq1  CTTAGCCTGGTAATATGAATGAATTATCAATAATGATAAAAAAGTATTG-  849
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTTAGCCTGGTAATATGAATGAATTATCAATAATGATAAAAAAGTATTGT  850

seq1  TTTTCTAAAACCAGAGATCACAATGATATGAGAGTCCAGATAGTCTCTTT  899
      |||||||||||||||||||||| |||||||||||||||||||||||  ||
seq2  TTTTCTAAAACCAGAGATCACATTGATATGAGAGTCCAGATAGTCTTCTT  900

seq1  TGTTACTATGATCTGACCTTGTTTGTCCTGGTTTTTGTATAAACTAGTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTATGATCTGACCTTGTTTGTCCTGGTTTTTGTATAAACTAGTGA  950

seq1  GA-TATTTCCCTATTCCAATCATATTAAAACATCACTGGAGGTATTATGA  998
      || ||||||||||||||||||||| ||||||||||||||||||  |||||
seq2  GATTATTTCCCTATTCCAATCATA-TAAAACATCACTGGAGGTTATATGA  999

seq1  AGACATTAAGATAATTATTGGGACAAATATCATGAAAACTCTCCAGAAAT  1048
      ||||||  |||||  ||||||||||||||||||| |||||||||||||| 
seq2  AGACAT--AGATA--TATTGGGACAAATATCATG-AAACTCTCCAGAAAA  1044

seq1  ATTGTAAATGTGTTGCTAATATCAATCTCCTGTAACTTTCAGAA-CTTTT  1097
      ||  | |||||| |||| ||||| |||||||||||| ||||||| |||||
seq2  AT--TTAATGTG-TGCT-ATATC-ATCTCCTGTAAC-TTCAGAACCTTTT  1088

seq1  TTATTTTTATGATTTCATGTAAGGAAATGGCATTGGAATTTTTATGTAGT  1147
      |||||||||||||||||||||  ||||||||||| ||||||||  |||||
seq2  TTATTTTTATGATTTCATGTA--GAAATGGCATT-GAATTTTTTAGTAGT  1135

seq1  CCTAGCGGGCTTTGAGCTTCTGAGCCCCTCCTTCCAAGTGCTGGGATTAT  1197
       |||||||   |||| |||| || || |||  | |||| ||||| ||| |
seq2  -CTAGCGG--CTTGACCTTC-GAACCTCTC--TTCAAGGGCTGGAATT-T  1178

seq1  AAGCATGGGTCACAATGCCTGTCTTTTTCTTT  1229
      ||||| |    |||||||||| | ||||||||
seq2  AAGCAGG----ACAATGCCTG-CCTTTTCTTT  1205

seq1: chr3_133341211_133341746
seq2: B6Ng01-025L04.g_66_601 (reverse)

seq1  TCTACAGCCCAGTGAAATGCTTCTCTATATTCTCTTATACAACTATACTT  50
      | ||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGTACAGCCCAGTGAAATGCTTCTCTATATTCTTTTATACAACTATACTT  50

seq1  GCTGATGTGAAAACGGTTTTGTATCATTACTTGGGCATCATAACTATTCA  100
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGTGAAAACGGTTTTGTATCATTACTTGGGCATCATAACTATTCA  100

seq1  TTGAATGTCTGTTATTTCTATACACCACCAGGAAGCAATACTTTTGATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGTCTGTTATTTCTATACACCACCAGGAAGCAATACTTTTGATAT  150

seq1  ATTTTCACTATTTGAGAATTTCAAACATGCATATAATGTATTTTGACAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCACTATTTGAGAATTTCAAACATGCATATAATGTATTTTGACAAT  200

seq1  GTTCCATCTCGCTTTTTCCTCATCTCCTCCTACATCTATCCTCTCTCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATCTCGCTTTTTCCTCATCTCCTCCTACATCTATCCTCTCTCCAC  250

seq1  TTCCTCAAACTTTATACCATCTTATTTTCATTTATTTTTCTAATGCACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAAACTTTATACCATCTTATTTTCATTTATTTTTCTAATGCACTA  300

seq1  AGTCCAGTTCGTGCTGCCCACAGTTTCATGGGTGTGAAGTCATACACTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGTTCGTGCTGCCCACAGTTTCATGGGTGTGAAGTCATACACTGG  350

seq1  AGCATAGTTCACAGACTAAGGGTCACATCTTTAAAGAAAATTGACCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGTTCACAGACTAAGGGTCACATCTTTAAAGAAAATTGACCCTTC  400

seq1  CTCTCCCAGAAGCCACAAGCTATTAATAGCTCCTCAGTTTGGGGTGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCAGAAGCCACAAGCTATTAATAGCTCCTCAGTTTGGGGTGTGGG  450

seq1  CTCCAGAGCTCCTCCCTCCTCCTTGCTAGGATGTTGACTTGATCTTGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAGCTCCTCCCTCCTCCTTGCTAGGATGTTGACTTGATCTTGTAC  500

seq1  AGCTCCTGAGCAGGCAACCACATCTGTTGGGAATTC  536
      ||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTGAGCAGGCAACCACATCTGTTGGGAATTC  536