BAC Information

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BAC

Clone NameB6Ng01-025L12
Chromosome3 (Build37)
Map Location 72,693,199 - 72,803,753
singlet/doubletdoublet
Overlap gene2010204N08Rik
Upstream geneLOC100041459
Downstream geneSlitrk3, Bche, LOC667425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025L12.bB6Ng01-025L12.g
ACCDH856971DH856972
length1,132980
definitionDH856971|Mus musculus domesticus DNA, BAC clone: B6Ng01-025L12, 5' end.DH856972|Mus musculus domesticus DNA, BAC clone: B6Ng01-025L12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,693,199 - 72,694,354)(72,803,181 - 72,803,753)
sequence
gaattctgcatggctggaacttaaaggcagctagtaacactcccctcatc
atgtcatgtcacatcacagatcacatcctattggatcgtttcacattctc
acatagtcttcatatactctaggacacagactcatggaatggaatggtgc
tgtcaacagtgtactgagtcttcccatatcagtaaacatcatcaagataa
agtcccacagatatgcccacatgtgtcaagttgattataaaataacatac
acgtgtgtatatgtatacatttcttgggattacagttacctatttactta
gtttttccttcttcctccttcctaacttatatactccttttggcaatttt
tcaaattcatgccctcttttcccattagttgtttttactgacaaatataa
tctaaatacagaaacaaaacctttttattctgtatgctatgatctgtctg
ttttcagtggtgactgtttagtattggatagtaacacatgtgactttgaa
gtatgtatttatgcatgagatttacagacagagacttataaggaattgcc
aatagttactattttaaatgaaatacttaataaatctttgaagtattttc
ctcagcattgcaaaggtttagaattagtgacttcttttgaaagaccattt
tttaacatgatataattatcctgaataaacttgttataacacttcggaat
acctcctttgaccctgaccaactatcattaggcacttcaatttttatact
gaaatcatgaggcttatttactattgttaactatatattaaggaacataa
atgcatgtcatctctttttcaatgtgactcagaaaagagaaatacaatcc
aatttatttaaagagtgattaatggtgaataaaacctccatcttggaaac
caatttgcctttaaaggaacattggttttcttctacctctgacaaaaata
ctaatcagtattatttttactaagaattttataagccaggacatgtttcc
aataacatagattttgaggattaatattaacccagaaggcaataatattt
aaactacttccctactcattgctgacttattaaaaaagtaaaggagttta
tcactgaaagtaaagactagatctagttgaag
gaattcttgctgttgtacattttaaaaccatagaaagtgaagatgtttta
ttctctttaagcctgaggagtgactatatctttctcaggtacctttgggt
gttacagcagaagcagaggaaactaaatttgactgcaggaaggtatgacc
aaagaactggttcactggtgaattaaaagatatggccggtttagtctaga
agggaggacatatgattatggccattccattacaagttttacacacggaa
atgaatgctgaagaagagaaaactgagtcctaaatttaaataaaacatat
acctgtgcctgcctttgcctgatctgaccaagtaagtttttccaaaggag
actgtaactacttatatcagctacaccccagttacatatgcagttattta
cacatatgtattgcaggtgatttaaaaggaacactcaatcataatgaata
aacatgggaaacatgtctttgtgctttgaagccaggtgtgttggggacat
ccttaattccaagcactttattggaggattggaaaacagagcttgtctta
tctacagagtgaattggaagttatattgggctgtatgagataatgtctca
aaacaaaattaactacactgaacaaacaaaaacatctgcctctttactaa
agggacataatccctaaataaatgtttgtccttgtacacatagataaatg
tagtcctcactcttgatcgtgaagctttctcttcacaatagacaccatta
aagaaaatcacaaccaaccaaaacagaaagttgtagagctcatcccaact
gatacatctactcttaacttctacatgtaaagtgcagggttcattatgga
acatggagcagaaagattctaaaaatcagaggattgagtttgctgtgaga
ctgtgtcacctagtatatcagatacacactcatgcagtctcatcaacaca
actgaccaaacatgaactgaacaaaaacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_72693199_72694354
seq2: B6Ng01-025L12.b_45_1176

seq1  GAATTCTGCATGGCTGGAACTTAAAGGCAGCTAGTAACACTCCCCTCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCATGGCTGGAACTTAAAGGCAGCTAGTAACACTCCCCTCATC  50

seq1  ATGTCATGTCACATCACAGATCACATCCTATTGGATCGTTTCACATTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATGTCACATCACAGATCACATCCTATTGGATCGTTTCACATTCTC  100

seq1  ACATAGTCTTCATATACTCTAGGACACAGACTCATGGAATGGAATGGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTCTTCATATACTCTAGGACACAGACTCATGGAATGGAATGGTGC  150

seq1  TGTCAACAGTGTACTGAGTCTTCCCATATCAGTAAACATCATCAAGATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACAGTGTACTGAGTCTTCCCATATCAGTAAACATCATCAAGATAA  200

seq1  AGTCCCACAGATATGCCCACATGTGTCAAGTTGATTATAAAATAACATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCACAGATATGCCCACATGTGTCAAGTTGATTATAAAATAACATAC  250

seq1  ACGTGTGTATATGTATACATTTCTTGGGATTACAGTTACCTATTTACTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTGTATATGTATACATTTCTTGGGATTACAGTTACCTATTTACTTA  300

seq1  GTTTTTCCTTCTTCCTCCTTCCTAACTTATATACTCCTTTTGGCAATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCCTTCTTCCTCCTTCCTAACTTATATACTCCTTTTGGCAATTTT  350

seq1  TCAAATTCATGCCCTCTTTTCCCATTAGTTGTTTTTACTGACAAATATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTCATGCCCTCTTTTCCCATTAGTTGTTTTTACTGACAAATATAA  400

seq1  TCTAAATACAGAAACAAAACCTTTTTATTCTGTATGCTATGATCTGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATACAGAAACAAAACCTTTTTATTCTGTATGCTATGATCTGTCTG  450

seq1  TTTTCAGTGGTGACTGTTTAGTATTGGATAGTAACACATGTGACTTTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTGGTGACTGTTTAGTATTGGATAGTAACACATGTGACTTTGAA  500

seq1  GTATGTATTTATGCATGAGATTTACAGACAGAGACTTATAAGGAATTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATTTATGCATGAGATTTACAGACAGAGACTTATAAGGAATTGCC  550

seq1  AATAGTTACTATTTTAAATGAAATACTTAATAAATCTTTGAAGTATTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTACTATTTTAAATGAAATACTTAATAAATCTTTGAAGTATTTTC  600

seq1  CTCAGCATTGCAAAGGTTTAGAATTAGTGACTTCTTTTGAAAGACCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCATTGCAAAGGTTTAGAATTAGTGACTTCTTTTGAAAGACCATTT  650

seq1  TTTAACATGATATAATTATCCTGAATAAACTTGTTATAACACTTCGGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACATGATATAATTATCCTGAATAAACTTGTTATAACACTTCGGAAT  700

seq1  ACCTCCTTTGACCCTGACCAACTATCATTAGGCACTTCAA-TTTTATACT  749
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACCTCCTTTGACCCTGACCAACTATCATTAGGCACTTCAATTTTTATACT  750

seq1  GAAATCATGAGGCTTATTTACTATTGTTAACTATATATTAAGGAACATAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCATGAGGCTTATTTACTATTGTTAACTATATATTAAGGAACATAA  800

seq1  ATGCATGTCATCTCTTTTTCAATGTGACTCAGAAAAGAGAAATACAATCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGTCATCTCTTTTTCAATGTGACTCAGAAAAGAGAAATACAATCC  850

seq1  AATTTATTTTAAAGAGTGATTAATGGTGAATAAAACCTCCATCTTGGAAA  899
      |||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  AATTTA-TTTAAAGAGTGATTAATGGTGAATAAAACCTCCATCTTGG-AA  898

seq1  ACCAATTTGCCTTTAAAGGAAACAATTGGTTTTTCTTCTACCTCTGACAA  949
      |||||||||||||||||||||   ||||| ||||||||||||||||||||
seq2  ACCAATTTGCCTTTAAAGGAA--CATTGG-TTTTCTTCTACCTCTGACAA  945

seq1  AAATACTAAATCAGTATTATTTTTACTAAGAATTTTATAAGCCAGGACAA  999
      ||||||| |||||||||||||||||||||||||||||||||||||||| |
seq2  AAATACT-AATCAGTATTATTTTTACTAAGAATTTTATAAGCCAGGAC-A  993

seq1  TGTTTCCAAATAACATAGATTTGTAGGATTAAATAATTAACCCAAGAAAG  1049
      ||||||| ||||||||||||||  ||||||||   |||||||| ||||  
seq2  TGTTTCC-AATAACATAGATTTTGAGGATTAA--TATTAACCC-AGAA--  1037

seq1  GGCAATAAATATTTTAAACTACTTCCCTTACTCATTGCTGACATAATTAA  1099
      |||||| |||| ||||||||||||||| |||||||||||||| || |   
seq2  GGCAAT-AATA-TTTAAACTACTTCCC-TACTCATTGCTGACTTATT---  1081

seq1  AAAAAAGTAAAAAGAGTTTATCACTGAAAAAGTAGAAGACTAGATTCTAA  1149
      |||||||| ||| |||||||||||||  |||||| ||||||||| ||| |
seq2  AAAAAAGT-AAAGGAGTTTATCACTG--AAAGTA-AAGACTAGA-TCT-A  1125

seq1  GTTGAAG  1156
      |||||||
seq2  GTTGAAG  1132

seq1: chr3_72803181_72803753
seq2: B6Ng01-025L12.g_69_641 (reverse)

seq1  TAACTTCCAATTCACTCTGTAGATAAGACAAGCTCTGTTTTCCAATCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCCAATTCACTCTGTAGATAAGACAAGCTCTGTTTTCCAATCCTC  50

seq1  CAATAAAGTGCTTGGAATTAAGGATGTCCCCAACACACCTGGCTTCAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAGTGCTTGGAATTAAGGATGTCCCCAACACACCTGGCTTCAAAG  100

seq1  CACAAAGACATGTTTCCCATGTTTATTCATTATGATTGAGTGTTCCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGACATGTTTCCCATGTTTATTCATTATGATTGAGTGTTCCTTTT  150

seq1  AAATCACCTGCAATACATATGTGTAAATAACTGCATATGTAACTGGGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACCTGCAATACATATGTGTAAATAACTGCATATGTAACTGGGGTG  200

seq1  TAGCTGATATAAGTAGTTACAGTCTCCTTTGGAAAAACTTACTTGGTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGATATAAGTAGTTACAGTCTCCTTTGGAAAAACTTACTTGGTCAG  250

seq1  ATCAGGCAAAGGCAGGCACAGGTATATGTTTTATTTAAATTTAGGACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGCAAAGGCAGGCACAGGTATATGTTTTATTTAAATTTAGGACTCA  300

seq1  GTTTTCTCTTCTTCAGCATTCATTTCCGTGTGTAAAACTTGTAATGGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTCTTCTTCAGCATTCATTTCCGTGTGTAAAACTTGTAATGGAAT  350

seq1  GGCCATAATCATATGTCCTCCCTTCTAGACTAAACCGGCCATATCTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATAATCATATGTCCTCCCTTCTAGACTAAACCGGCCATATCTTTTA  400

seq1  ATTCACCAGTGAACCAGTTCTTTGGTCATACCTTCCTGCAGTCAAATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACCAGTGAACCAGTTCTTTGGTCATACCTTCCTGCAGTCAAATTTA  450

seq1  GTTTCCTCTGCTTCTGCTGTAACACCCAAAGGTACCTGAGAAAGATATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTCTGCTTCTGCTGTAACACCCAAAGGTACCTGAGAAAGATATAG  500

seq1  TCACTCCTCAGGCTTAAAGAGAATAAAACATCTTCACTTTCTATGGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCTCAGGCTTAAAGAGAATAAAACATCTTCACTTTCTATGGTTTT  550

seq1  AAAATGTACAACAGCAAGAATTC  573
      |||||||||||||||||||||||
seq2  AAAATGTACAACAGCAAGAATTC  573