BAC Information

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BAC

Clone NameB6Ng01-026A09
Chromosome3 (Build37)
Map Location 54,716,793 - 54,769,728
singlet/doubletdoublet
Overlap gene6030405A18Rik
Upstream geneEG666444, LOC100039937, Trpc4, Postn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524
Downstream geneCcna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2, Dclk1, Mab21l1, 4933417G07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026A09.bB6Ng01-026A09.g
ACCDH857185DH857186
length1,0261,076
definitionDH857185|Mus musculus domesticus DNA, BAC clone: B6Ng01-026A09, 5' end.DH857186|Mus musculus domesticus DNA, BAC clone: B6Ng01-026A09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,768,696 - 54,769,728)(54,716,793 - 54,717,888)
sequence
gaattcaatctgcagcttgttaaatagctgacagagccaggggaaggaat
gcagattgactgggagagaacagatttctgccgatcacgcaggagctcat
gaatattgattctggacctgatttccccctccagagatgagaagacacag
tgccattcataatgcaccgtagaaccctagaccaactgctccatcaggct
agaatataaactgctcatcaaactgcaatctagatacatttcttcacttt
cgtatcgtgtttccaaggagaaaacccatttcgcaaaattgttgataggc
cctgctctaggaattctaagttggaacccaagaaaatgggagctacctca
tactaagtgctcaacaacaaaggcttaatagaaaaaactcacaggcagag
taaaatctcagctggggtccattttgtaggtgtcattgtggatggaataa
tcagggaggagaaaaaggataaggggcaagggagagttgttgatgggaca
cactggaagagcaaccctgccccccaatgccgtgttacccaggcctttct
gtggaatgtgtaagcagctcctaaaagaaaattgcagacgtgagtaatta
aaagttttgttcttgccgatctaattatgtgctggttttcaagggctgtg
ttggaccttcctctgaaagtgtctgtctgttaaaagctagggcttacaga
gtgcacacactgaggtgtttgctctgtgctactgttggtagtcattagca
aactactacattgagaaaaaaaatccaattggttctacattgaaaaggaa
gcaacctacatggagatatttcacataaagacaaatgtactctgtgctaa
tgatttcaaatagttttcacagccaattccttccgtcgatcccatgcctg
aggaaaagttgacttttaccaacttctttagtatgtacattatgaaatag
catatgtgacagagggtgagatatctttgccttcatgaacacagatttgc
ttcagaaggaatagatgcagaagaaa
gaattcagagctcttctatactcagagtgtttgtggctgggttgtacaat
ttctaaccagaggtgcagttaatgttgatgtggtttcttggctgctagga
atcagtctctctttctctctcacacttctcaatgccaaactcttctaaat
gataaacctgattcaaagtgcatggtcacatccccagggaactcctgaag
aaggaattctgatatcaggggacagctggcttcagaatgctaaaccctgt
ggtcacatctccaacatcagaaccagagctcatcatcaaagactttggct
ctgtgtcatgccatccagtgaatggccagatagacctcatgaacttaaat
caaggacaagccatatgtgcttgcccagaacctcattcacctaagcctgt
taggtccttcacactcacagactgtctgaaaggagacctgctattcatgc
attcacagcttgagcttctgcgttggatttttctagtctaagaactagcc
aaacagcttcgttattttcttttatcccacactatgaacaatgatacaag
aaaacaaaatttggcctgtgacacctgatattagtatagaaatgtgataa
taccacatggtctgctcgtcatttctttctgataataagttcaatgtaaa
aaaatcactatataaaataggaatgctaaaatataagttcagggagaaga
tcaaatctagaactaccatcaagtgaactccaaactgatcctgctggaaa
ccgaggccagatgagaggatttcacttggggtgggcttatgtttcactct
taggatgaatgataacttcaaggttactaagtgactcacacatacaatta
atcatggtgaccaatcgcctcctccttcatttatctgcctcataagtaag
atagaggagacaggagaggaattcagaagcttgcagacaatctactggtg
ccagcacaatagcacagtgctcctctctacatcgaatccactgtgaatac
aacatccagtcaatcaggcagccgaactgaccagctaggaaacagagcca
tcttactgacatcagcctcttcagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_54768696_54769728
seq2: B6Ng01-026A09.b_47_1072 (reverse)

seq1  TTTCTTTCTGCCATCTATTTCCTTCTGGAAGCAAATCTGTGTTCATGAAG  50
      |||| ||||| |||||| |||||||| |||||||||||||||||||||||
seq2  TTTC-TTCTG-CATCTA-TTCCTTCT-GAAGCAAATCTGTGTTCATGAAG  46

seq1  GCAAAGATTATCTCACCCCTCTGTCACATATGCTATTTCATAATGTACAT  100
      ||||||| ||||||| ||||||||||||||||||||||||||||||||||
seq2  GCAAAGA-TATCTCA-CCCTCTGTCACATATGCTATTTCATAATGTACAT  94

seq1  ACTAAAGAAGTTGGTAAAAGTCAACTTTTTCCTCAGGCATGGGATCGACG  150
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACTAAAGAAGTTGGTAAAAGTCAAC-TTTTCCTCAGGCATGGGATCGACG  143

seq1  GAAGGAATTGGCTGTGAAAACTATTTGAAATCATTAGCACAGAGTACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAATTGGCTGTGAAAACTATTTGAAATCATTAGCACAGAGTACATT  193

seq1  TGTCTTTATGTGAAATATCTCCATGTAGGTTGCTTCCTTTTCAATGTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTATGTGAAATATCTCCATGTAGGTTGCTTCCTTTTCAATGTAGA  243

seq1  ACCAATTGGATTTTTTTTCTCAATGTAGTAGTTTGCTAATGACTACCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTGGATTTTTTTTCTCAATGTAGTAGTTTGCTAATGACTACCAAC  293

seq1  AGTAGCACAGAGCAAACACCTCAGTGTGTGCACTCTGTAAGCCCTAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCACAGAGCAAACACCTCAGTGTGTGCACTCTGTAAGCCCTAGCTT  343

seq1  TTAACAGACAGACACTTTCAGAGGAAGGTCCAACACAGCCCTTGAAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGACAGACACTTTCAGAGGAAGGTCCAACACAGCCCTTGAAAACC  393

seq1  AGCACATAATTAGATCGGCAAGAACAAAACTTTTAATTACTCACGTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATAATTAGATCGGCAAGAACAAAACTTTTAATTACTCACGTCTGC  443

seq1  AATTTTCTTTTAGGAGCTGCTTACACATTCCACAGAAAGGCCTGGGTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTTTTAGGAGCTGCTTACACATTCCACAGAAAGGCCTGGGTAAC  493

seq1  ACGGCATTGGGGGGCAGGGTTGCTCTTCCAGTGTGTCCCATCAACAACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCATTGGGGGGCAGGGTTGCTCTTCCAGTGTGTCCCATCAACAACTC  543

seq1  TCCCTTGCCCCTTATCCTTTTTCTCCTCCCTGATTATTCCATCCACAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGCCCCTTATCCTTTTTCTCCTCCCTGATTATTCCATCCACAATG  593

seq1  ACACCTACAAAATGGACCCCAGCTGAGATTTTACTCTGCCTGTGAGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTACAAAATGGACCCCAGCTGAGATTTTACTCTGCCTGTGAGTTTT  643

seq1  TTCTATTAAGCCTTTGTTGTTGAGCACTTAGTATGAGGTAGCTCCCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTAAGCCTTTGTTGTTGAGCACTTAGTATGAGGTAGCTCCCATTT  693

seq1  TCTTGGGTTCCAACTTAGAATTCCTAGAGCAGGGCCTATCAACAATTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGTTCCAACTTAGAATTCCTAGAGCAGGGCCTATCAACAATTTTG  743

seq1  CGAAATGGGTTTTCTCCTTGGAAACACGATACGAAAGTGAAGAAATGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAATGGGTTTTCTCCTTGGAAACACGATACGAAAGTGAAGAAATGTAT  793

seq1  CTAGATTGCAGTTTGATGAGCAGTTTATATTCTAGCCTGATGGAGCAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTGCAGTTTGATGAGCAGTTTATATTCTAGCCTGATGGAGCAGTT  843

seq1  GGTCTAGGGTTCTACGGTGCATTATGAATGGCACTGTGTCTTCTCATCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAGGGTTCTACGGTGCATTATGAATGGCACTGTGTCTTCTCATCTC  893

seq1  TGGAGGGGGAAATCAGGTCCAGAATCAATATTCATGAGCTCCTGCGTGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGGGAAATCAGGTCCAGAATCAATATTCATGAGCTCCTGCGTGAT  943

seq1  CGGCAGAAATCTGTTCTCTCCCAGTCAATCTGCATTCCTTCCCCTGGCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGAAATCTGTTCTCTCCCAGTCAATCTGCATTCCTTCCCCTGGCTC  993

seq1  TGTCAGCTATTTAACAAGCTGCAGATTGAATTC  1033
      |||||||||||||||||||||||||||||||||
seq2  TGTCAGCTATTTAACAAGCTGCAGATTGAATTC  1026

seq1: chr3_54716793_54717888
seq2: B6Ng01-026A09.g_68_1143

seq1  GAATTCAGAGCTCTTCTATACTCAGAGTGTTTGTGGCTGGGTTGTACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGCTCTTCTATACTCAGAGTGTTTGTGGCTGGGTTGTACAAT  50

seq1  TTCTAACCAGAGGTGCAGTTAATGTTGATGTGGTTTCTTGGCTGCTAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACCAGAGGTGCAGTTAATGTTGATGTGGTTTCTTGGCTGCTAGGA  100

seq1  ATCAGTCTCTCTTTCTCTCTCACACTTCTCAATGCCAAACTCTTCTAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCTCTCTTTCTCTCTCACACTTCTCAATGCCAAACTCTTCTAAAT  150

seq1  GATAAACCTGATTCAAAGTGCATGGTCACATCCCCAGGGAACTCCTGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACCTGATTCAAAGTGCATGGTCACATCCCCAGGGAACTCCTGAAG  200

seq1  AAGGAATTCTGATATCAGGGGACAGCTGGCTTCAGAATGCTAAACCCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATTCTGATATCAGGGGACAGCTGGCTTCAGAATGCTAAACCCTGT  250

seq1  GGTCACATCTCCAACATCAGAACCAGAGCTCATCATCAAAGACTTTGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACATCTCCAACATCAGAACCAGAGCTCATCATCAAAGACTTTGGCT  300

seq1  CTGTGTCATGCCATCCAGTGAATGGCCAGATAGACCTCATGAACTTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCATGCCATCCAGTGAATGGCCAGATAGACCTCATGAACTTAAAT  350

seq1  CAAGGACAAGCCATATGTGCTTGCCCAGAACCTCATTCACCTAAGCCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACAAGCCATATGTGCTTGCCCAGAACCTCATTCACCTAAGCCTGT  400

seq1  TAGGTCCTTCACACTCACAGACTGTCTGAAAGGAGACCTGCTATTCATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCCTTCACACTCACAGACTGTCTGAAAGGAGACCTGCTATTCATGC  450

seq1  ATTCACAGCTTGAGCTTCTGCGTTGGATTTTTCTAGTCTAAGAACTAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAGCTTGAGCTTCTGCGTTGGATTTTTCTAGTCTAAGAACTAGCC  500

seq1  AAACAGCTTCGTTATTTTCTTTTATCCCACACTATGAACAATGATACAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTTCGTTATTTTCTTTTATCCCACACTATGAACAATGATACAAG  550

seq1  AAAACAAAATTTGGCCTGTGACACCTGATATTAGTATAGAAATGTGATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAATTTGGCCTGTGACACCTGATATTAGTATAGAAATGTGATAA  600

seq1  TACCACATGGTCTGCTCGTCATTTCTTTCTGATAATAAGTTCAATGTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACATGGTCTGCTCGTCATTTCTTTCTGATAATAAGTTCAATGTAAA  650

seq1  AAAATCACTATATAAAATAGGAATGCTAAAATATAAGTTCAGGGAGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCACTATATAAAATAGGAATGCTAAAATATAAGTTCAGGGAGAAGA  700

seq1  TCAAATCTAGAACTACCATCAAGTGAACTCCAAACTGATCCTGCTGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCTAGAACTACCATCAAGTGAACTCCAAACTGATCCTGCTGGAAA  750

seq1  CCGAGGCCAGATGAGAGGATTTCACTTGGGGTGGGCTTATGTTTCACTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGCCAGATGAGAGGATTTCACTTGGGGTGGGCTTATGTTTCACTCT  800

seq1  TAGGATGAATGATAACTTCAAGGTTACTAAGTGACTCACACATACAATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGAATGATAACTTCAAGGTTACTAAGTGACTCACACATACAATTA  850

seq1  ATCATGGTGACCAATCGCCTCCTCCTTCATTTATCTGCCTCAATAAGTAA  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATCATGGTGACCAATCGCCTCCTCCTTCATTTATCTGCCTC-ATAAGTAA  899

seq1  GATAGAGGAAGACAGGAAGAGGAATTCAGAAAGCTTGCAGACAAATCTAC  950
      |||||||| ||||||| |||||||||||| |||||||||||| |||||||
seq2  GATAGAGG-AGACAGG-AGAGGAATTCAG-AAGCTTGCAGAC-AATCTAC  945

seq1  TGGTGCCAAGCACAATAGCACAGTTGCTCTCTCTTAACATCAGATCCACT  1000
      ||||||| ||||||||||||||| ||||| ||||  |||||  |||||| 
seq2  TGGTGCC-AGCACAATAGCACAG-TGCTC-CTCTCTACATCGAATCCAC-  991

seq1  TGTGACATACAAACATCCAGTCAAATCAGGCAAGCCGAACTGACCAAGGC  1050
      ||||| |||| ||||||||||| |||||||| ||||||||||||||  ||
seq2  TGTGA-ATAC-AACATCCAGTC-AATCAGGC-AGCCGAACTGACCA--GC  1035

seq1  AAAGGAGAACAGAGCCCATCTTACCTGACATCAAGCTTCTTCAGTG  1096
        |||| ||||||| |||||||| |||||||| ||| |||||||||
seq2  -TAGGA-AACAGAG-CCATCTTA-CTGACATC-AGCCTCTTCAGTG  1076