BAC Information

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BAC

Clone NameB6Ng01-026D12
Chromosome3 (Build37)
Map Location 81,566,070 - 81,567,154
singlet/doubletsinglet
Overlap genenone
Upstream geneGria2, Glrb, EG626841, Pdgfc, LOC229443
Downstream geneLOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r, LOC100041940
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026D12.bB6Ng01-026D12.g
ACCDH857327DH857328
length1,2191,074
definitionDH857327|Mus musculus domesticus DNA, BAC clone: B6Ng01-026D12, 5' end.DH857328|Mus musculus domesticus DNA, BAC clone: B6Ng01-026D12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatgggaatcagatgtcttcctaaattaaactacctggtacattg
agacaaggtctctcatttgaagtcagaagttgccaatttggctactctgg
ctatccagcttgctctgggaatcacttgcatgcactgctcaagggtagga
attataagaagccctccctcccccccccccaattgccaggcatttacatg
gatgctgtggaatccagatatcgttctcatactttcatagaaagtgcttt
tacctttactacagagcaattgtaataaaaactgcatggtactggtatag
agacagacaagtagaccaatggaatagaattgaagatccagaaatgaacc
cacacacctatggtcacttgatcttcgacaagggagctaaaaccatccag
tggaagaaagacagcattttcaacaattggtgctggcacaactggttgtt
atcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaagg
tcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaa
cttatagaggagaaagtggggaaaagccttgaagatatgggcacagggga
aaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaatcg
acaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacact
gtcaataagacaaaaagaccaccaacagattgggaaaggatctttaccta
tcctaaatcagataggggactaatatccaacatatataaagaactcaaga
atgtggacttcagaaaatcaaataacctcattaaaaatggggctcagaac
tgaacaaagaattctcatctgaggaataccgaatgcagagaagcacttga
aaaatgttcacatccttaatcatcaggaaatgcaatcaaacaaccctgag
attccacctcccaccagtcagatgctagatcaaaattcagtgacacaaat
gctgcagatgggaaaaaggaacatcctcattgttggtgggatgcagctgt
acaccccttgaatcatttgcgtctcgaactggacatgatcacgagatcgc
atctctctggctatcgaatgcaagtaagacaggtccatgttctaaggcct
tattatcactggaacaatgtctctctgagtacgtaggaatgccatgactt
cgctcaaagagtatattac
gaattcattgtttactaggaactaaagtagttgatgaatatgtcttttgt
taaaaaaataagtatcttggagtctctaaaaatgtatatggagatcaatg
tgaactatagcaagtttttcttgaggtacgacatgtcaaaacaatagaaa
aatacatggttaataacacatagtttaactcatgcatatcatagaaaata
agtgtggatacataaaataataaattattaacaatttgtcatcaaattaa
taaagtctacagaagtttataaattatacttaacattaaagggttctggg
aagaataaaaactatgttttgtatttctagggaggcaggtggtagtgact
agcatttagtcacacttccattcctgttgcatggacacagacattatgta
ttccaatattgttagctatctgaaaacaaaaatcacagaaatatcctaga
tgccaattactgtgagatttcataagtaaatatattcatgcagtgagact
ctggggaggcctaataaagactgaggttaaatatcttaaactactctaga
aacaaatctgcaatattttaccaattaaaatcacattgatttccatgtag
tcttataccttttaagaacttgtgtgttcaagaaagcagaatcattacta
tgctcaagtgaatgtagatttaatgaaaacctacctgaagacatctataa
ttaccttcagtttgagaagccctggtaatagagacggtgtactgtgtatt
ttcacgttgtgtgtaactactgcttgtctgtttaatattacacagatgct
atttagtttctgatgttcatattgtatgtaaccacaaatttttcttttta
acattacgcagatattattggtattcgattgctgtatttggtgccgagtt
tctttttatggatatcatccatgtacggtagctcacaccctgacctcata
ttcagctacagagaaacagaaatgctatgagtgtggtccaggatgagcca
atactgatactagtcagcttttgctacaagtagacctatcactttaaccg
aaccaatccctctccctatatcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_81566070_81567154
seq2: B6Ng01-026D12.g_68_1141 (reverse)

seq1  TAGATATAGGGAGAAGAGATTTGGTTTTGGTTTAAAGTGATAGGGTCTTA  50
      ||||||||||||| || |||| |   || | ||||||||||| |||| ||
seq2  TAGATATAGGGAG-AGGGATTGG---TTCGGTTAAAGTGATA-GGTC-TA  44

seq1  CTTTGTAGCAAAAGCTGACCTAGTATTCAGTATGTGGCTCATCCTGGACC  100
      | |||||||||||||||| |||||| ||||||| ||||||||||||||||
seq2  C-TTGTAGCAAAAGCTGA-CTAGTA-TCAGTAT-TGGCTCATCCTGGACC  90

seq1  ACACTCATAGCATTTCTGTTTCTTCTGTAGCCTGAATATGAGGGTCAGGG  150
      |||||||||||||||||||||| ||||||| |||||||||| ||||||||
seq2  ACACTCATAGCATTTCTGTTTC-TCTGTAG-CTGAATATGA-GGTCAGGG  137

seq1  TGTGAGCTACCGTACATGGATGAATATCCATAAAAAGAAACTCGGCACCA  200
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTGAGCTACCGTACATGGATG-ATATCCATAAAAAGAAACTCGGCACCA  186

seq1  AATACAGC-ATCGAATACCAATAATATCTGCGTAATGTTAAAAAG-AAAA  248
      |||||||| |||||||||||||||||||||||||||||||||||| ||||
seq2  AATACAGCAATCGAATACCAATAATATCTGCGTAATGTTAAAAAGAAAAA  236

seq1  TTTGTGGTTACATACAATATGAACATCAGAAACT-AATAGCATCTGTGTA  297
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTTGTGGTTACATACAATATGAACATCAGAAACTAAATAGCATCTGTGTA  286

seq1  ATATTAAACAGACAAGCAGTAGTTACACACAACGTGAAAATACACAGTAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAACAGACAAGCAGTAGTTACACACAACGTGAAAATACACAGTAC  336

seq1  ACCGTCTCTATTACCAGGGCTTCTCAAACTGAAGGTAATTATAGATGTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTCTCTATTACCAGGGCTTCTCAAACTGAAGGTAATTATAGATGTCT  386

seq1  TCAGGTAGGTTTTCATTAAATCTACATTCACTTGAGCATAGTAATGATTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTAGGTTTTCATTAAATCTACATTCACTTGAGCATAGTAATGATTC  436

seq1  TGCTTTCTTGAACACACAAGTTCTTAAAAGGTATAAGACTACATGGAAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTTGAACACACAAGTTCTTAAAAGGTATAAGACTACATGGAAAT  486

seq1  CAATGTGATTTTAATTGGTAAAATATTGCAGATTTGTTTCTAGAGTAGTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGATTTTAATTGGTAAAATATTGCAGATTTGTTTCTAGAGTAGTT  536

seq1  TAAGATATTTAACCTCAGTCTTTATTAGGCCTCCCCAGAGTCTCACTGCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATATTTAACCTCAGTCTTTATTAGGCCTCCCCAGAGTCTCACTGCA  586

seq1  TGAATATATTTACTTATGAAATCTCACAGTAATTGGCATCTAGGATATTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATATTTACTTATGAAATCTCACAGTAATTGGCATCTAGGATATTT  636

seq1  CTGTGATTTTTGTTTTCAGATAGCTAACAATATTGGAATACATAATGTCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATTTTTGTTTTCAGATAGCTAACAATATTGGAATACATAATGTCT  686

seq1  GTGTCCATGCAACAGGAATGGAAGTGTGACTAAATGCTAGTCACTACCAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCATGCAACAGGAATGGAAGTGTGACTAAATGCTAGTCACTACCAC  736

seq1  CTGCCTCCCTAGAAATACAAAACATAGTTTTTATTCTTCCCAGAACCCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCCTAGAAATACAAAACATAGTTTTTATTCTTCCCAGAACCCTT  786

seq1  TAATGTTAAGTATAATTTATAAACTTCTGTAGACTTTATTAATTTGATGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTAAGTATAATTTATAAACTTCTGTAGACTTTATTAATTTGATGA  836

seq1  CAAATTGTTAATAATTTATTATTTTATGTATCCACACTTATTTTCTATGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGTTAATAATTTATTATTTTATGTATCCACACTTATTTTCTATGA  886

seq1  TATGCATGAGTTAAACTATGTGTTATTAACCATGTATTTTTCTATTGTTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATGAGTTAAACTATGTGTTATTAACCATGTATTTTTCTATTGTTT  936

seq1  TGACATGTCGTACCTCAAGAAAAACTTGCTATAGTTCACATTGATCTCCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGTCGTACCTCAAGAAAAACTTGCTATAGTTCACATTGATCTCCA  986

seq1  TATACATTTTTAGAGACTCCAAGATACTTATTTTTTTAACAAAAGACATA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATTTTTAGAGACTCCAAGATACTTATTTTTTTAACAAAAGACATA  1036

seq1  TTCATCAACTACTTTAGTTCCTAGTAAACAATGAATTC  1085
      ||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAACTACTTTAGTTCCTAGTAAACAATGAATTC  1074