BAC Information

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BAC

Clone NameB6Ng01-026E07
Chromosome3 (Build37)15 (Build37)
Map Location 29,165,335 - 29,166,48228,206,563 - 28,206,718
singlet/doubletsingletsinglet
Overlap gene6130401L20Rik
Upstream geneTnik, Slc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527
Downstream geneLOC100040676, Evi1, Mds1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026E07.bB6Ng01-026E07.g
ACCDH857361DH857362
length1,120978
definitionDH857361|Mus musculus domesticus DNA, BAC clone: B6Ng01-026E07, 5' end.DH857362|Mus musculus domesticus DNA, BAC clone: B6Ng01-026E07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(29,165,335 - 29,166,482)(28,206,563 - 28,206,718)
sequence
gaattcattttcaagtggttgtaactaaaaaatcacaagctttgggagat
agagtaatagatattttgttaagactgtataaagtctgtaagaagtcagt
acattaaaatctgtcaggagaggtcatcactggctacaggttaatatctg
tacttggtatctttaatagtgccaatgtatatctgagctagtgtttaacc
tgactagaggaaggaagacaggtctaagactttagataaaagttcatggt
ggaggtgagtttctactttaaaaaatattttgagtattttagtgttgtga
tacatgtatgatatttattgttttagactctgagacaagcaggtgaaaag
acaactcctttctcatcttccctttcactgaccagcaacctctggaggcg
atcagctgtggtttgcttatgtgctttgccagagaaagttctagaattag
acagcccatcagtctgtttataagcatgctggcattttctttgcaaactg
tctgaaccaaactgagcaaggcactttagaacatctctgactggttgggg
gcttcctttaatgtttaccatgggtattcattgtgttggagaaaatgcaa
taaattttaggacgaacttttggaagaaaaattggaatgaaggttaaaga
tctatgttccttgtcacgaggacaggcagagaaaatgatccaagtcccct
ctctatgtatgcaaaagttctcaaagagaaggacaaacgcagtcctttgg
ccttgctgcgcccaagtgcccattattttgatactgagtttcttacgaag
cagaaaagtgaatagtgacctctgtccagcctggctggtgaaaaacaagc
agactgatttcctctgggcaatgtgatcaattacctgtatgaaaagaaaa
tggatgatactcatatgccttgaacatttattatatagagatccctacct
cctgtagtttggaaaaacctggattcatggtagcatcataagcagaatgc
tcgccccataccccctcctggaactgcacctcctggttcccttctctgct
caagacttgtgttagtcgatccctggctttatgaaaatctggatatgggc
aagcagttgttgatgtaaag
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggaccagatgtagctgtctcttgtgagactatgcggggcctagcaaacac
agaagtggatgctcacagtcagctaatggatggatacagggctcccatgg
agagctagagaagacccaaggagctaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_29165335_29166482
seq2: B6Ng01-026E07.b_47_1166

seq1  GAATTCATTTTCAAGTGGTTGTAACTAAAAAATCACAAGCTTTGGGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTCAAGTGGTTGTAACTAAAAAATCACAAGCTTTGGGAGAT  50

seq1  AGAGTAATAGATATTTTGTTAAGACTGTATAAAGTCTGTAAGAAGTCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAATAGATATTTTGTTAAGACTGTATAAAGTCTGTAAGAAGTCAGT  100

seq1  ACATTAAAATCTGTCAGGAGAGGTCATCACTGGCTACAGGTTAATATCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAAATCTGTCAGGAGAGGTCATCACTGGCTACAGGTTAATATCTG  150

seq1  TACTTGGTATCTTTAATAGTGCCAATGTATATCTGAGCTAGTGTTTAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGTATCTTTAATAGTGCCAATGTATATCTGAGCTAGTGTTTAACC  200

seq1  TGACTAGAGGAAGGAAGACAGGTCTAAGACTTTAGATAAAAGTTCATGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAGAGGAAGGAAGACAGGTCTAAGACTTTAGATAAAAGTTCATGGT  250

seq1  GGAGGTGAGTTTCTACTTTAAAAAATATTTTGAGTATTTTAGTGTTGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGAGTTTCTACTTTAAAAAATATTTTGAGTATTTTAGTGTTGTGA  300

seq1  TACATGTATGATATTTATTGTTTTAGACTCTGAGACAAGCAGGTGAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTATGATATTTATTGTTTTAGACTCTGAGACAAGCAGGTGAAAAG  350

seq1  ACAACTCCTTTCTCATCTTCCCTTTCACTGACCAGCAACCTCTGGAGGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCCTTTCTCATCTTCCCTTTCACTGACCAGCAACCTCTGGAGGCG  400

seq1  ATCAGCTGTGGTTTGCTTATGTGCTTTGCCAGAGAAAGTTCTAGAATTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTGTGGTTTGCTTATGTGCTTTGCCAGAGAAAGTTCTAGAATTAG  450

seq1  ACAGCCCATCAGTCTGTTTATAAGCATGCTGGCATTTTCTTTGCAAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCATCAGTCTGTTTATAAGCATGCTGGCATTTTCTTTGCAAACTG  500

seq1  TCTGAACCAAACTGAGCAAGGCACTTTAGAACATCTCTGACTGGTTGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACCAAACTGAGCAAGGCACTTTAGAACATCTCTGACTGGTTGGGG  550

seq1  GCTTCCTTTAATGTTTACCATGGGTATTCATTGTGTTGGAGAAAATGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTTTAATGTTTACCATGGGTATTCATTGTGTTGGAGAAAATGCAA  600

seq1  TAAATTTTAGGACGAACTTTTGGAAGAAAAATTGGAATGAAGGTTAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTAGGACGAACTTTTGGAAGAAAAATTGGAATGAAGGTTAAAGA  650

seq1  TCTATGTTCCTTGTCACGAGGACAGGCAGAGAAAATGATCCAAGTCCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTTCCTTGTCACGAGGACAGGCAGAGAAAATGATCCAAGTCCCCT  700

seq1  CTCTATGTATGCAAAAGTTCTCAAAGAGAAGGACAAACGCAGTCCTTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGTATGCAAAAGTTCTCAAAGAGAAGGACAAACGCAGTCCTTTGG  750

seq1  CCTTGCTGCGCCCAAGTGCCCATTATTTTGATACTGAGTTTCTTACGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTGCGCCCAAGTGCCCATTATTTTGATACTGAGTTTCTTACGAAG  800

seq1  CAGAAAAGTGAATAGTGACCTCTGTCCAGCCTGGCTGGTGAAAAACAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGTGAATAGTGACCTCTGTCCAGCCTGGCTGGTGAAAAACAAGC  850

seq1  AGACTGATTTCCTCTGGGCAATGTGATCAATTACCTGTATGAAAAGGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGACTGATTTCCTCTGGGCAATGTGATCAATTACCTGTATGAAAA-GAAA  899

seq1  ATGGATGATACTCATATGCCTTGGAACATTTTATTATATAGAGATCCCTA  950
      |||||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  ATGGATGATACTCATATGCCTT-GAACA-TTTATTATATAGAGATCCCTA  947

seq1  CCTCCTGTAGTTTGGGAGACACCCTGGAATTCATGGTAGCATCATAAAGC  1000
      |||||||||||||||   | | ||||| ||||||||||||||||| ||||
seq2  CCTCCTGTAGTTTGG--AAAAACCTGG-ATTCATGGTAGCATCAT-AAGC  993

seq1  AGAATGCTCGCCCCCATACCCCCTCCCTGTACCTGCACCTCCCTGGTTCC  1050
      |||||||||| ||||||||||||| |||| | |||||||| ||||||| |
seq2  AGAATGCTCG-CCCCATACCCCCT-CCTGGAACTGCACCT-CCTGGTT-C  1039

seq1  CCTTCTCTGCATCAAGACTTGCTGTTAGGTCAGTTCACCTGGGGCTTTGA  1100
      |||||||||| |||||||||| ||||| ||| | || |||  |||||| |
seq2  CCTTCTCTGC-TCAAGACTTG-TGTTA-GTC-GATC-CCT--GGCTTT-A  1081

seq1  TGAGAGTTCTGTGAATATGGGCAGAGGCAGTGTTGTTGCATGTTAAAG  1148
      ||| |    | || ||||||||  | |||  ||||||| ||| |||||
seq2  TGAAA---ATCTGGATATGGGC--AAGCA--GTTGTTG-ATG-TAAAG  1120

seq1: chr15_28206563_28206718
seq2: B6Ng01-026E07.g_880_1030 (reverse)

seq1  TTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATGCAATAGCTGACTG  50
      |||||||||| ||||| |||| ||||||| |||||| || ||||||||||
seq2  TTCTCTAGCT-CTCCA-TGGGAGCCCTGT-ATCCATCCATTAGCTGACTG  47

seq1  TGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGG  100
      ||||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  TGAGCATCCACTTCTGTGTTTGCTAGGCCCC-GCATAGTCTCACAAGAGA  96

seq1  CAGCTATATCTGGGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAATGGT  150
      |||||| |||| ||||||||||| ||||||||||||||||||||||||||
seq2  CAGCTACATCT-GGTCCTTTCAGTAAAATCTTGCTAGTGTATGCAATGGT  145

seq1  GTCAGC  156
      ||||||
seq2  GTCAGC  151