BAC Information

Click to search

BAC

Clone NameB6Ng01-026E14
Chromosome4 (Build37)3 (Build37)
Map Location 72,044,893 - 72,046,08214,577,320 - 14,577,837
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC667638, EG667649, Tle1
Downstream geneAldoa-ps2, EG384113, LOC667713, LOC100039698
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026E14.bB6Ng01-026E14.g
ACCDH857375DH857376
length1,156769
definitionDH857375|Mus musculus domesticus DNA, BAC clone: B6Ng01-026E14, 5' end.DH857376|Mus musculus domesticus DNA, BAC clone: B6Ng01-026E14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(72,044,893 - 72,046,082)(14,577,320 - 14,577,837)
sequence
gaattccatcgcgcaacacagcctctttgtatcttcaaaatggtgtgact
ggccccaggccagccacgttcaaagtttcgctatttgtgtcatctgggcc
ccagtactgatggaggctttgattacagcttggacctagctgtaagaccc
ttcaggggcagccactcagcaaataaaggcattgattggttgttgggtca
atttagccataagggtgcagggcatggttcttttgaaaagcctaatggat
tagcaacacaaccagccccagtgaaggccttatttttcaagtaacttcat
gatggtgtcccagcttggcacagatctcttcccccagagcagctctgggg
cctttcttcttgtcaatactggggctcaaaggattagacacagcaggttt
tacaatttaatgaaaacagctgttgaaacaacaattaaggcaaacaatag
tctgcatggaaaactattaattatgtaaagttatgcagaaagtgcaataa
tcttttcttcagagccctctaagctgactgagaacaacctggagccacct
tcccttccatgggtcttaagtatcaggaagtggggtgcttctaagaatgg
gcgccattgctgcgcgcgtgggcggatatgcagtgttcacagagtctcag
gctgagctggagattaaatattcaaaagactatcctctaaacttaattta
ccttgggcactgagccttttcagatcagcttagagagttttcataagtgt
ctaagattggatttgagcattaacagttgggatccccaacttgtgcttta
aaaaaacaaaacaaaacaaaacaaaacaaaagcaaaaacaaacacttcca
taaaatgccctcctctaggcctaatcggaagcaaacagctcttgggaaat
ggagtctcttgttcttgagacaaagtcagtttattacattatgaccgtcc
agtttggactagcaagccttccttttcaccttcattcctcttccagctaa
atgcagaatcatttctcttcctgtgctgctgggactttaattctagcttc
tctcttggaaattctacctgactaacagtgctggaatgacttgggccctt
gccaccctgatcccaccccactcctctggcgggattccagcagagtccca
ttaaga
gaattcagtgctaaggaagtctacagaagagagaatctgtcagttataca
tctgaaagaggattaatgcccagaaaatatagagaactcaaaaacaaaga
atcataaaaaccaatgactgatccaaaaaagtagacctgggacctgaaca
gagggtttttaaaagaataagtaaacatgactaagaaatattgtaaaaaa
aaaaaaaagttcattatctccaggaattagaaaaatgcaaaccaaaagaa
ctttgaaatttcatctttccccaatcagcatgaccaaacccaacaaaaca
actgacaacaaatgctggagaagatgtgagggaagtggaactcttattca
ctcttgatgagattacaaactagtctagacactttggaaagcagtgtgga
gatacctcaaaaggctaaacataagtgcaccaaaggacctagctcttacc
actacttcctgaaggactcatcaacttggtctacagatacttgctcaacc
atgatggctgttgctcaattcacaatagctaggaaatggaaacaacctac
aagtccttcaactgatgaatagataatgaaaatgtgctacataaacacta
tgcaatactgtttagccacaaagaaaataaaaacatgaactttgcaggtg
aatggatgcaactagaaatgatcatattaaatgaagtaattcagaaacag
aaataaaagaaaaattgcctggtttttttttattttttgttttgtttttg
tttttttgttttttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_72044893_72046082
seq2: B6Ng01-026E14.b_48_1203 (reverse)

seq1  TCTTAATGGGACTTCTTGGCTTGGTGATTCCCGCACAGGGAGGAAAGTGG  50
      |||||||||||| |||  |||    || |||||| ||  ||||  |||||
seq2  TCTTAATGGGAC-TCT--GCT---GGAATCCCGC-CA--GAGG--AGTGG  39

seq1  GGTGTGGAATACAGGGTGGGCAAAGGGCCATAAGTCAATTCCCAGCACTG  100
      |||| |||   ||||||||   |||||||  ||||||  | |||||||||
seq2  GGTG-GGA--TCAGGGTGG--CAAGGGCC-CAAGTCA--TTCCAGCACTG  81

seq1  TTAGTCAAGGGTAGAAATTTCAAAGAGAGAAGCTATGAATTTAAAGTCCC  150
      |||||||  ||||| |||||| ||||||||||||| ||| ||||||||||
seq2  TTAGTCA--GGTAG-AATTTCCAAGAGAGAAGCTA-GAA-TTAAAGTCCC  126

seq1  AGCAAGCACAGGAAGGAGAAATGAATACTGCATTTAGCTGGGAGGAGGGA  200
      ||| |||||||||| |||||||| || |||||||||||||| ||   |||
seq2  AGC-AGCACAGGAA-GAGAAATG-ATTCTGCATTTAGCTGGAAG--AGGA  171

seq1  ATGAAGGTGGAAAAGGAAGGCTTGCTAGTCCAAACTGGACGGTCATAATG  250
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGT-GAAAAGGAAGGCTTGCTAGTCCAAACTGGACGGTCATAATG  220

seq1  TAATTAAAACTGACTTTGTCTCAAGAACAAGAGACTCCATTTCCCAAGAG  300
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAT--AAACTGACTTTGTCTCAAGAACAAGAGACTCCATTTCCCAAGAG  268

seq1  CTGTTTGCTTCCGATTAGGCCTAGAGGAGGGCATTTTATGGAAGTGTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGCTTCCGATTAGGCCTAGAGGAGGGCATTTTATGGAAGTGTTTG  318

seq1  TTTTTTGCTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTTTAAAGCACAA  400
       |||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  -TTTTTGCTTTTGTTTTGTTTTGTTTTGTTTTG-TTTTTTTAAAGCACAA  366

seq1  GTTGGGGATCCCAACTGTTAATGCTCAAATCCAATCTTAGACACTTATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGATCCCAACTGTTAATGCTCAAATCCAATCTTAGACACTTATGA  416

seq1  AAACTCTCTAAGCTGATCTGAAAAGGCTCAGTGCCCAAGGTAAATTAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTCTAAGCTGATCTGAAAAGGCTCAGTGCCCAAGGTAAATTAAGT  466

seq1  TTAGAGGATAGTCTTTTGAATATTTAATCTCCAGCTCAGCCTGAGACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGATAGTCTTTTGAATATTTAATCTCCAGCTCAGCCTGAGACTCT  516

seq1  GTGAACACTGCATATCCGCCCACGCGCGCAGCAATGGCGCCCATTCTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACACTGCATATCCGCCCACGCGCGCAGCAATGGCGCCCATTCTTAG  566

seq1  AAGCACCCCACTTCCTGATACTTAAGACCCATGGAAGGGAAGGTGGCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCCCACTTCCTGATACTTAAGACCCATGGAAGGGAAGGTGGCTCC  616

seq1  AGGTTGTTCTCAGTCAGCTTAGAGGGCTCTGAAGAAAAGATTATTGCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTTCTCAGTCAGCTTAGAGGGCTCTGAAGAAAAGATTATTGCACT  666

seq1  TTCTGCATAACTTTACATAATTAATAGTTTTCCATGCAGACTATTGTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCATAACTTTACATAATTAATAGTTTTCCATGCAGACTATTGTTTG  716

seq1  CCTTAATTGTTGTTTCAACAGCTGTTTTCATTAAATTGTAAAACCTGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATTGTTGTTTCAACAGCTGTTTTCATTAAATTGTAAAACCTGCTG  766

seq1  TGTCTAATCCTTTGAGCCCCAGTATTGACAAGAAGAAAGGCCCCAGAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAATCCTTTGAGCCCCAGTATTGACAAGAAGAAAGGCCCCAGAGCT  816

seq1  GCTCTGGGGGAAGAGATCTGTGCCAAGCTGGGACACCATCATGAAGTTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGGGGAAGAGATCTGTGCCAAGCTGGGACACCATCATGAAGTTAC  866

seq1  TTGAAAAATAAGGCCTTCACTGGGGCTGGTTGTGTTGCTAATCCATTAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAATAAGGCCTTCACTGGGGCTGGTTGTGTTGCTAATCCATTAGG  916

seq1  CTTTTCAAAAGAACCATGCCCTGCACCCTTATGGCTAAATTGACCCAACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAAAAGAACCATGCCCTGCACCCTTATGGCTAAATTGACCCAACA  966

seq1  ACCAATCAATGCCTTTATTTGCTGAGTGGCTGCCCCTGAAGGGTCTTACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATCAATGCCTTTATTTGCTGAGTGGCTGCCCCTGAAGGGTCTTACA  1016

seq1  GCTAGGTCCAAGCTGTAATCAAAGCCTCCATCAGTACTGGGGCCCAGATG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGTCCAAGCTGTAATCAAAGCCTCCATCAGTACTGGGGCCCAGATG  1066

seq1  ACACAAATAGCGAAACTTTGAACGTGGCTGGCCTGGGGCCAGTCACACCA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATAGCGAAACTTTGAACGTGGCTGGCCTGGGGCCAGTCACACCA  1116

seq1  TTTTGAAGATACAAAGAGGCTGTGTTGCGCGATGGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAGATACAAAGAGGCTGTGTTGCGCGATGGAATTC  1156

seq1: chr3_14577320_14577837
seq2: B6Ng01-026E14.g_586_837

seq1  ATTCATAATAGCCGGAAACTGGAAACAACCTAC-ATTCCCTCAATCGAAC  49
      ||||| ||||||  | || |||||||||||||| | ||| ||||  ||  
seq2  ATTCACAATAGCTAGGAAATGGAAACAACCTACAAGTCCTTCAACTGATG  50

seq1  AATGGATTTAAAGATAAAATAAGTGGTACATTATCACAATGGAGTATTAC  99
      ||| ||  ||| |  |||||  ||| ||||| | ||| ||| | ||    
seq2  AATAGA--TAATG--AAAAT--GTGCTACATAAACACTATGCAATA----  90

seq1  TCGGTTGTTTA---AAAAAAAAAATGACATCATGAAATATACTGGCAAAT  146
           ||||||   | ||| ||||| | | |||||| | | | ||  |||
seq2  ----CTGTTTAGCCACAAAGAAAATAAAAACATGAACTTTGCAGGTGAAT  136

seq1  TGATGGAACTCAAAAACCTCATCCTGAGTGAAGTAACCCAAACTCAG---  193
       |||| ||||  |||   ||||  | | ||||||||  || |  |||   
seq2  GGATGCAACTAGAAATGATCATATTAAATGAAGTAATTCAGAAACAGAAA  186

seq1  --AAAGATGAA---CATGGTACATACTCACTTATAAGTGGATCTTAGCTG  238
        |||||  ||   | ||||   |  | | || |   |   | || | | 
seq2  TAAAAGAAAAATTGCCTGGTTTTTTTTTATTTTTTGTTTTGTTTTTGTTT  236

seq1  TAAAGTAAACATAATGCTACAATCCCCAGACCCAGAAAGACTAAGTAACA  288
      |   ||     |  |                                   
seq2  TTTTGTTTTTTTTTTT----------------------------------  252

seq1  AGACAGGCTAAAGAGGGTATCTCTCTGGAAAGGGTCAGTGGAATAGAATC  338
                                                        
seq2  --------------------------------------------------  252

seq1  TGCAGGTGGATTGGGGGGGCAGACGGGGATTTTAAGTGTTGCAGCTCTGA  388
                                                        
seq2  --------------------------------------------------  252

seq1  AGGAAAATGCTTCCCCTACAGAAGTTTTGCTCCAGACGCCTGGAAAAATT  438
                                                        
seq2  --------------------------------------------------  252

seq1  TTGGTTTAAAATTGTTTTCAGGATTTACTAGTTAATGCTGTCAGTTTCTC  488
                                                        
seq2  --------------------------------------------------  252

seq1  CTCGCGTTTTGTTTTTTTGTTTTTTTTTTT  518
                                    
seq2  ------------------------------  252