BAC Information

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BAC

Clone NameB6Ng01-026E20
Chromosome3 (Build37)
Map Location 126,426,849 - 126,574,652
singlet/doubletdoublet
Overlap geneCamk2d
Upstream geneNdst4, Ugt8a, Arsj
Downstream geneAnk2, LOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026E20.bB6Ng01-026E20.g
ACCDH857385DH857386
length1,004327
definitionDH857385|Mus musculus domesticus DNA, BAC clone: B6Ng01-026E20, 5' end.DH857386|Mus musculus domesticus DNA, BAC clone: B6Ng01-026E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,573,642 - 126,574,652)(126,426,849 - 126,427,176)
sequence
gaattcaatcgactaatacatttcagaccaaatgtgctctttatttccca
tattgctttagcatacaattcgcaaattagtgtctcctccttagcaccat
agttaggttaggtcgctggagtccacgtctattttgtttactctattgga
gtgcttcaaatgctttgctctggggagctaagatggctattgctcagagt
caggacccacttgctatcattcatctatgagtatgtatccattctcagtt
ggccaaaattgcaagtggagttatgcctttcagcttttgattctgttctg
tatgaatctctttcctttagtgttgctgtttcagtaacaaactgtatgtt
atcatgtattttaaacaaagcaattattcatagaagatattcttaactct
caatgcttttatgtatgtcatgtacatatgtgcgcacagatatgcatgtg
tacaagagtctgcctgtgcattatcttctattgcttttcatccttaattt
tttaaaaacggagtctctcactgtccctggagctttcagaaagcctccag
gagcaacctgtctctgcctctctcctcaggtactgcaggtacagatgtgg
tctctgtgcccagattttacatatacgctgggagtccaaacataggtcct
catgtttaaatagcaagcactttactaccagagccatatccatagccaca
gctcttcagaatgtctcctgacaaagcagtacttttgccttctgttccac
aacaatgctattgctgcaccatattccaaatagattctttttaactaggg
ttgtcaacaagactcttcacataagactcttagcagacttactatcttaa
agattgtgaaattgtggagggtccttaaaaaaacggtgcttcaagtgttc
atactgaagttgcttgtacacagtggggagaagagagaagtattctagtt
tgaggtatagtttctgtgtctctctctcatctctgtctctctgtctcctg
tctc
attgcagtctaccagtatgattaactgctcagttccataatgaaatataa
tgggggaggaggaggaggtcctgaatttgagttgtgtgggagaattataa
taataatattaagttatatatccattataaatcgcactggagttgtataa
gcaatttcataaaatcatcatgattaaccacttcgatttcataggacaga
gagtaagaaatgaaggcataaggaaatcgtacttagacgggaatggggac
ttcatattctgtcaagggtttactgaggaaaaatgtctccataagtaatt
ctgtaagttactttggtggatttggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_126573642_126574652
seq2: B6Ng01-026E20.b_46_1049 (reverse)

seq1  GAGACAGGGAGACAGAGAGACAGAGATGAGAGAGAGAACACAGAAACTAT  50
      |||||| ||||||||||||||||||||||||||||| |||||||||||||
seq2  GAGACA-GGAGACAGAGAGACAGAGATGAGAGAGAG-ACACAGAAACTAT  48

seq1  AACCTCCAAACTAGAATACTTCTCTCTTTCTCCCCACTGTGTACAAGCAA  100
       |||| |||||||||||||||||||| |||||||||||||||||||||||
seq2  -ACCT-CAAACTAGAATACTTCTCTC-TTCTCCCCACTGTGTACAAGCAA  95

seq1  CCTTCAGTATGAACACTTGAAGCACCGTTTTTTTTAAGGACCCTCCACAA  150
       |||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  -CTTCAGTATGAACACTTGAAGCACCG-TTTTTTTAAGGACCCTCCACAA  143

seq1  TTTCACAATCTTTAAGATAGTAAGTCTGCTAAGAGTCTTATGTGAAGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAATCTTTAAGATAGTAAGTCTGCTAAGAGTCTTATGTGAAGAGT  193

seq1  CTTGTTGACAACCCTAGTTAAAAAGAATCTATTTGGAATATGGTGCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGACAACCCTAGTTAAAAAGAATCTATTTGGAATATGGTGCAGCA  243

seq1  ATAGCATTGTTGTGGAACAGAAGGCAAAAGTACTGCTTTGTCAGGAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATTGTTGTGGAACAGAAGGCAAAAGTACTGCTTTGTCAGGAGACA  293

seq1  TTCTGAAGAGCTGTGGCTATGGATATGGCTCTGGTAGTAAAGTGCTTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGAGCTGTGGCTATGGATATGGCTCTGGTAGTAAAGTGCTTGCT  343

seq1  ATTTAAACATGAGGACCTATGTTTGGACTCCCAGCGTATATGTAAAATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAACATGAGGACCTATGTTTGGACTCCCAGCGTATATGTAAAATCT  393

seq1  GGGCACAGAGACCACATCTGTACCTGCAGTACCTGAGGAGAGAGGCAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACAGAGACCACATCTGTACCTGCAGTACCTGAGGAGAGAGGCAGAG  443

seq1  ACAGGTTGCTCCTGGAGGCTTTCTGAAAGCTCCAGGGACAGTGAGAGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTGCTCCTGGAGGCTTTCTGAAAGCTCCAGGGACAGTGAGAGACT  493

seq1  CCGTTTTTAAAAAATTAAGGATGAAAAGCAATAGAAGATAATGCACAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTTTTAAAAAATTAAGGATGAAAAGCAATAGAAGATAATGCACAGGC  543

seq1  AGACTCTTGTACACATGCATATCTGTGCGCACATATGTACATGACATACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTTGTACACATGCATATCTGTGCGCACATATGTACATGACATACA  593

seq1  TAAAAGCATTGAGAGTTAAGAATATCTTCTATGAATAATTGCTTTGTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCATTGAGAGTTAAGAATATCTTCTATGAATAATTGCTTTGTTTA  643

seq1  AAATACATGATAACATACAGTTTGTTACTGAAACAGCAACACTAAAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATGATAACATACAGTTTGTTACTGAAACAGCAACACTAAAGGAA  693

seq1  AGAGATTCATACAGAACAGAATCAAAAGCTGAAAGGCATAACTCCACTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTCATACAGAACAGAATCAAAAGCTGAAAGGCATAACTCCACTTG  743

seq1  CAATTTTGGCCAACTGAGAATGGATACATACTCATAGATGAATGATAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTGGCCAACTGAGAATGGATACATACTCATAGATGAATGATAGCA  793

seq1  AGTGGGTCCTGACTCTGAGCAATAGCCATCTTAGCTCCCCAGAGCAAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTCCTGACTCTGAGCAATAGCCATCTTAGCTCCCCAGAGCAAAGC  843

seq1  ATTTGAAGCACTCCAATAGAGTAAACAAAATAGACGTGGACTCCAGCGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAGCACTCCAATAGAGTAAACAAAATAGACGTGGACTCCAGCGAC  893

seq1  CTAACCTAACTATGGTGCTAAGGAGGAGACACTAATTTGCGAATTGTATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTAACTATGGTGCTAAGGAGGAGACACTAATTTGCGAATTGTATG  943

seq1  CTAAAGCAATATGGGAAATAAAGAGCACATTTGGTCTGAAATGTATTAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCAATATGGGAAATAAAGAGCACATTTGGTCTGAAATGTATTAGT  993

seq1  CGATTGAATTC  1011
      |||||||||||
seq2  CGATTGAATTC  1004

seq1: chr3_126426849_126427176
seq2: B6Ng01-026E20.g_73_399

seq1  ATTGCAGTCTACCAGTATGATTAACTGCTCAGTTCCATAATGAAATATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGTCTACCAGTATGATTAACTGCTCAGTTCCATAATGAAATATAA  50

seq1  TGGGGGAGGAGGAGGAGGTCCTGAATTTGAGTTGTGTGGGAGAATTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAGGAGGAGGAGGTCCTGAATTTGAGTTGTGTGGGAGAATTATAA  100

seq1  TAATAATATTAAGTTATATATCCATTATAAATCGCACTGGAGTTGTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATATTAAGTTATATATCCATTATAAATCGCACTGGAGTTGTATAA  150

seq1  GCAATTTCATAAAATCATCATGATTAACCACTTCGATTTCATAGGACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTCATAAAATCATCATGATTAACCACTTCGATTTCATAGGACAGA  200

seq1  GAGTAAGAAATGAAGGCATAAGGAAATCGTACTTAGACGGGAATGGGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGAAATGAAGGCATAAGGAAATCGTACTTAGACGGGAATGGGGAC  250

seq1  TTCATATTCTGTCAAGGGTTTACTGAGGAAAATATGTCTCCATAAGTAAT  300
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTCATATTCTGTCAAGGGTTTACTGAGGAAAA-ATGTCTCCATAAGTAAT  299

seq1  TCTGTAAGTTACTTTGGTGGATTTGGTG  328
      ||||||||||||||||||||||||||||
seq2  TCTGTAAGTTACTTTGGTGGATTTGGTG  327