BAC Information

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BAC

Clone NameB6Ng01-026I20
Chromosome3 (Build37)2 (Build37)
Map Location 41,059,142 - 41,059,737123,594,856 - 123,595,923
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026I20.bB6Ng01-026I20.g
ACCDH857564DH857565
length9661,062
definitionDH857564|Mus musculus domesticus DNA, BAC clone: B6Ng01-026I20, 5' end.DH857565|Mus musculus domesticus DNA, BAC clone: B6Ng01-026I20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,142 - 41,059,737)(123,594,856 - 123,595,923)
sequence
gaattctttgtttagctctgagccccatttttaatggggttatttgattt
tctggagtccatcttcttgagttctttatatatattagatattagtcccc
tatctgatttaggataggtaaagctcctttcccaatctgttggtggtctc
tttctcttattgacggtgtcttttgccttgcagaagctttgcaactttat
gaggtcccatttgtcgattctcgatcttacagcgcaagccattactgttc
tattcaggaattttccccatgtacccatatctataagtttcagtgtctct
ggttttatgtggagttccttgatccacttagatttgaccttagtacaagg
agataggaatggatcaattcacattcttctacatgataactgccagttgt
gccagcaccatttgttgaaaatgctgtctttttgccactggatggtttta
gctgccttgtcaaagatcaagtgaccataggtgtgtgggttcatttctgg
gtcttcaattctattccattggtctacttgtctgtcactataccagtacc
atgcagtttttatcacaattatacttaagtgctttgttaactgcaagatt
tatttactacttgattcttgtggagagccatgccgtgagcaatcaccatt
ataagatggcgctggcttccactgcgcctaactagtaaacaagccttaag
cgcaagtgcaagagtgaactcatgcctagttactgcccatctctcggcct
agtaatggggtgatgggtgagcaaagaatcagagctgtcacgccacatca
gtgctgaaacattacgctgtgggctatataagcagtgccattttcctggt
tcggggtcttcctcctgataagtaagcaataaaagctttgccgcagatgt
tccgttgtcctgagtgtgttcttgcagcggacaaagctcgggatagattc
ttttcttacactttgc
gaattccaattttaacctttcctttttcctactctgtttattttgcctta
gttgtcttctcaagggattgccttcattttaaatgataaaaatgtaattt
ttcctacttagtgggagttaactctcatgatttacctctcctggtaagtc
cctgtgatgtcttgctttaggagacatttgtgcagttgtattcatgctgc
ctaggtagcagtatgggaatactggttataaaacatggagtttatataaa
gaattaagttttaatagtattactatttagtgagtctctatgttaattac
tatcggctacaagaatattctctagtgagctttcagcaatgcactgattg
ttgtgttaatcaatatgtcattcatgtcatcttattctatggtcatctag
cagaataaaagcagtaggctcatgacccatctagtcttaggtccttggcc
tcatgaacagtgtcaggtatgagttccatccattgagtgggtcttaagtc
taataaaattggttggttgctcccatagcgtttatgccattattgcacta
ttagatgtgtcgtccaggcaagactcacttgtagataacaaggtttatag
atgggtaagactgatgtttatttattttttctatggtagtgtgtatagta
cctttcagcacttgaatgctagttatcagggatggtgctcctagctggac
atcatctcagttttctccatattcaattacacaagtaagtgatgtcttca
gcaagaagataattttgtttttgtttttcactagccccttcacactaaac
ctatcctgtcctctttatttgcttgcaacatcccagatctgttctctctg
aatgttctagggccactcttataacaggttttcagtactttggctggagt
ggttaaagcagtgttcactgcctctcagttctgttcctgggagacatttg
ctggtgtgtgcagatgagagttagtaaggactggttagccaggagcaatt
ttcagtctgaatcctctcattcttaagtgttccccccaccaatctcctcc
catgaggctgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059142_41059737
seq2: B6Ng01-026I20.b_46_614 (reverse)

seq1  AATTGTGATAAAAACTGCATGGTACTGGTATAGTGACAGACAAGCAGACC  50
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AATTGTGATAAAAACTGCATGGTACTGGTATAGTGACAGACAAGTAGACC  50

seq1  AATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCAC  100
      |||||||||||||||||||| |||||| ||| ||||||||||||||||||
seq2  AATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCAC  100

seq1  TTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCAT  150
      |||||||| ||||||| ||||||||||||||||||| |||||||||||||
seq2  TTGATCTTTGACAAGGCAGCTAAAACCATCCAGTGGCAAAAAGACAGCAT  150

seq1  TTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGC  200
      ||||||||||||||||||||||||||||  ||||||||||||||||||| 
seq2  TTTCAACAAATGGTGCTGGCACAACTGGCAGTTATCATGTAGAAGAATGT  200

seq1  GAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATC  250
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAATTGATCCATTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATC  250

seq1  AAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGT  300
      ||||||| ||||||||||||||||||||||||||||||            
seq2  AAGGAACTCCACATAAAACCAGAGACACTGAAACTTAT------------  288

seq1  GGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAA  350
                     ||||||||  ||| ||| |||||||||| ||||||
seq2  ---------------AGATATGGGTACATGGGGAAAATTCCTGAATAGAA  323

seq1  CAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATG  400
      ||| ||||||||| |||||||||| |||||| ||||||||||||||||| 
seq2  CAGTAATGGCTTGCGCTGTAAGATCGAGAATCGACAAATGGGACCTCATA  373

seq1  AAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG  450
      ||  ||||||||||||||||||||||||||||||||||||||| ||| ||
seq2  AAGTTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGAGAAAGAG  423

seq1  -GCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGG  499
        ||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACCACCAACAGATTGGGAAAGGAGCTTTACCTATCCTAAATCAGATAGGG  473

seq1  GACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAA  549
      |||||||||| ||||||||| |||||||||||||| |||| |||||||||
seq2  GACTAATATCTAATATATATAAAGAACTCAAGAAGATGGACTCCAGAAAA  523

seq1  TCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  596
      ||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCAAATAACCCCATT-AAAAATGGGGCTCAGAGCTAAACAAAGAATT  569

seq1: chr2_123594856_123595923
seq2: B6Ng01-026I20.g_65_1126

seq1  GAATTCCAATTTTAACCTTTCCTTTTTCCTACTCTGTTTATTTTGCCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATTTTAACCTTTCCTTTTTCCTACTCTGTTTATTTTGCCTTA  50

seq1  GTTGTCTTCTCAAGGGATTGCCTTCATTTTAAATGATAAAAATGTAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTTCTCAAGGGATTGCCTTCATTTTAAATGATAAAAATGTAATTT  100

seq1  TTCCTACTTAGTGGGAGTTAACTCTCATGATTTACCTCTCCTGGTAAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACTTAGTGGGAGTTAACTCTCATGATTTACCTCTCCTGGTAAGTC  150

seq1  CCTGTGATGTCTTGCTTTAGGAGACATTTGTGCAGTTGTATTCATGCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGATGTCTTGCTTTAGGAGACATTTGTGCAGTTGTATTCATGCTGC  200

seq1  CTAGGTAGCAGTATGGGAATACTGGTTATAAAACATGGAGTTTATATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTAGCAGTATGGGAATACTGGTTATAAAACATGGAGTTTATATAAA  250

seq1  GAATTAAGTTTTAATAGTATTACTATTTAGTGAGTCTCTATGTTAATTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAGTTTTAATAGTATTACTATTTAGTGAGTCTCTATGTTAATTAC  300

seq1  TATCGGCTACAAGAATATTCTCTAGTGAGCTTTCAGCAATGCACTGATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGGCTACAAGAATATTCTCTAGTGAGCTTTCAGCAATGCACTGATTG  350

seq1  TTGTGTTAATCAATATGTCATTCATGTCATCTTATTCTATGGTCATCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTAATCAATATGTCATTCATGTCATCTTATTCTATGGTCATCTAG  400

seq1  CAGAATAAAAGCAGTAGGCTCATGACCCATCTAGTCTTAGGTCCTTGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAAAAGCAGTAGGCTCATGACCCATCTAGTCTTAGGTCCTTGGCC  450

seq1  TCATGAACAGTGTCAGGTATGAGTTCCATCCATTGAGTGGGTCTTAAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAACAGTGTCAGGTATGAGTTCCATCCATTGAGTGGGTCTTAAGTC  500

seq1  TAATAAAATTGGTTGGTTGCTCCCATAGCGTTTATGCCATTATTGCACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAATTGGTTGGTTGCTCCCATAGCGTTTATGCCATTATTGCACTA  550

seq1  TTAGATGTGTCGTCCAGGCAAGACTCACTTGTAGATAACAAGGTTTATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGTGTCGTCCAGGCAAGACTCACTTGTAGATAACAAGGTTTATAG  600

seq1  ATGGGTAAGACTGATGTTTATTTATTTTTTCTATGGTAGTGTGTATAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTAAGACTGATGTTTATTTATTTTTTCTATGGTAGTGTGTATAGTA  650

seq1  CCTTTCAGCACTTGAATGCTAGTTATCAGGGATGGTGCTCCTAGCTGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAGCACTTGAATGCTAGTTATCAGGGATGGTGCTCCTAGCTGGAC  700

seq1  ATCATCTCAGTTTTCTCCATATTCAATTACACAAGTAAGTGATGTCTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTCAGTTTTCTCCATATTCAATTACACAAGTAAGTGATGTCTTCA  750

seq1  GCAAGAAGATAATTTTGTTTTTGTTTTTCACTAGCCCCTTCACACTAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAGATAATTTTGTTTTTGTTTTTCACTAGCCCCTTCACACTAAAC  800

seq1  CTATCCTGTCCTCTTTATTTGCTTGCAACATCCCAGATCTGTTCTCTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTGTCCTCTTTATTTGCTTGCAACATCCCAGATCTGTTCTCTCTG  850

seq1  AATGTTCTAGGGCCACTCTTATAACAGGCTTTTCAGTACTTTGGCTGGAG  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AATGTTCTAGGGCCACTCTTATAACAGG-TTTTCAGTACTTTGGCTGGAG  899

seq1  TGGTTAAAGCAGTGTTCACTGCCTCTCAGTTCTGTTCCTGGGAGACATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAAAGCAGTGTTCACTGCCTCTCAGTTCTGTTCCTGGGAGACATTT  949

seq1  GCTGGTGTGTGCAGATGAAGAGTTAGTAGGAACTGGTTAGCCAGGAGCAA  1000
      ||||||||||||||||| |||||||||| | |||||||||||||||||||
seq2  GCTGGTGTGTGCAGATG-AGAGTTAGTAAGGACTGGTTAGCCAGGAGCAA  998

seq1  -TTTCAGTCTGAATCCCTACCATTCCTTAAGTGTTCACCCCCAACAAATC  1049
       ||||||||||||| |||  |||| ||||||||||  ||||| || ||||
seq2  TTTTCAGTCTGAAT-CCTCTCATT-CTTAAGTGTT--CCCCCCACCAATC  1044

seq1  TCCTCCCAATGAGCCTGTC  1068
      ||||||| ||||| |||||
seq2  TCCTCCC-ATGAGGCTGTC  1062