BAC Information

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BAC

Clone NameB6Ng01-026I24
Chromosome3 (Build37)
Map Location 71,079,946 - 71,166,735
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041384, LOC625868, LOC670542, EG625901
Downstream geneEG667377, LOC667385, LOC100041459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026I24.bB6Ng01-026I24.g
ACCDH857572DH857573
length1,1671,113
definitionDH857572|Mus musculus domesticus DNA, BAC clone: B6Ng01-026I24, 5' end.DH857573|Mus musculus domesticus DNA, BAC clone: B6Ng01-026I24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,165,552 - 71,166,735)(71,079,946 - 71,081,075)
sequence
gaattcaatatgtaatccagggtggctgcaaactcacaaaaaaatgcctg
tgttcttctcacacatgctaatattaaaggcgtgtgccactgtatcctgc
atgtacacacatttaaagacagtagcacagaaggatatatatataatgga
ttatatataatacatatatatatgatataagcataatgtgtacattttta
atataatactcatatgttatacatactatctatgacatagtaaataaaat
gatattatattgacctgtcctcattattgtttaccatttccatacaggca
actatatgcctttgttacttgtagatttatatcattcataaattagtatg
aacagatgtttgtatgaagaagtcatttgcatgtaaaatattggaatttt
tttctttacctttggcagatctacttaaacaatccaacttccattctata
gggctggtagaaaagcaaatgtttctcaaaagctctgtagtatgccatca
tatgctcacattcttaaactttgctaacagaatttaagagacttttttat
ctatgtgaaaattcccttaatatggtcattataaagcaaaaataaaatgt
tttaaataccatagattactattcatgaaggattaacttgaaaaacatga
atcttgaagacagtaaattatgtccaacaaaatggtgtgccgtgagatgg
caataagaaggttttaagtatagatagcatcacagtatcaataaaggact
cattaatatacattattaatatagaaatgattcttatctaaacatctgtt
tttcactatgcacataaactatggtctttctcttcctatgataaagacta
agaaataaaatatggaaatttattttgcaatggcatttaaattgctttct
ttttggtacacttattaattaatatgtatgatgtagtcttcttgaagtaa
aacaaaatgagaaactggctagaagagaaaatggtaggctcaaaagaatc
acatcagccattaatcaaacttattgcaaggaagattaggatgttttgct
tgtttttataaagataaataattacatttttaattggtttaaaaaaccaa
accttgatagatatggaatcgagtctaatgcaacttaaccaccatagggg
gcagaaaaaaaggattc
gaattcatttaaatatacaaattgtgttaatgagataggacaaattttga
tattttttcagtaatgtgatttgtaaaaagaaacaaattgaatatctgag
catatcattagctaaactaaaaacataaaggggaatattattcaaagaat
attatacaatgaaatcttgtatctatttgatataataacccatagcaaaa
taggaattattgtaaattgctgaaacagatatcttaaaatggtgaatctt
tcttttacacccagagatgtactggaatgctctagtatcattctttgcat
taagcctgaaacttgagattgtggaataaagaagacagtaaagttccatg
actcagcaaggtcagaatagaggataccatgcctgttaagaatctcatga
attctgtcctgtggtcagggtggtgagctaagagaggtattcttacaggt
ttttgggaaacttaagagagagttaatgtcatatcctggagggtcttatc
tcactgtgatccttgaatcctggaaacctgggaaggacacacataatatc
tcactgaaggactgatgttttcttttattgctttagcatagcttaagatg
aatattgttcttagagtttggcctgatacattgaagtatccttttttatt
cacatgatttacctgcccatctgattttttttttttttttaatgattgag
ccttttgatactaagcctccaatcaggtcaaagaaaatgcttttcctaaa
gtgtctccataaaggcaaggtcaaggttgttttaatgttaggataagtga
tttgcgatattcccatgttagaaaaaaaaaaactactctattgaaattct
aataaattaatgataagttgaagagaaactattgtaaatcaaatatgtca
tttattgcttgatggtttgttttttcccagacttattgttgtggatcacc
catggagctttccccttagttttcccatctgttttttgtgaaaagtatat
tggtgtgtttgtataacctaaatcattggggagaggcacataacaaagaa
gtcctccgcttaggaggtgctctgcgattaagttctggaaacaaggagaa
ctaactttgattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_71165552_71166735
seq2: B6Ng01-026I24.b_49_1215 (reverse)

seq1  GAATCCTTTTTTTTTCTTGCACCCTCATTGTTGGTTTAAGTTGCTATATG  50
      |||||||||||||    ||| |||| || ||  | ||||||||| ||  |
seq2  GAATCCTTTTTTT---CTGCCCCCT-ATGGT--GGTTAAGTTGC-ATTAG  43

seq1  ACTTCTGATTCCTAATCTATATCAAAGTTTTGTTGTTATTAAACCAAATA  100
      |||   ||||||  || | |||||| |||| ||  || ||||||||| ||
seq2  ACT--CGATTCC--ATATCTATCAAGGTTTGGT--TTTTTAAACCAATTA  87

seq1  AAAATGTAAATTATTTATCTTTATTAAAAACAAGCAAAACATCCTTAATC  150
      ||||||| ||||||||||||||| |||||||||||||||||||| |||||
seq2  AAAATGT-AATTATTTATCTTTA-TAAAAACAAGCAAAACATCC-TAATC  134

seq1  TTCCTTGCAATAGTTTTGATTAATGGCTGATGTGATTCTTTTGAGCCTAC  200
      ||||||||||||  ||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGCAATAAGTTTGATTAATGGCTGATGTGATTCTTTTGAGCCTAC  184

seq1  CATTTATCTCTTCTAGCCAGTTTCTCATTTTGTTTTACTTCAAGAAGACT  250
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTT-TCTCTTCTAGCCAGTTTCTCATTTTGTTTTACTTCAAGAAGACT  233

seq1  ACATCATACATATTAATTAATAAGTGTACCAAAAAGAAAGCAATTTAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATACATATTAATTAATAAGTGTACCAAAAAGAAAGCAATTTAAAT  283

seq1  GCCATTGCAAAATAAATTTCCATATTTTATTTCTTAGTCTTTATCATAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGCAAAATAAATTTCCATATTTTATTTCTTAGTCTTTATCATAGG  333

seq1  AAGAGAAAGACCATAGTTTATGTGCATAGTGAAAAACAGATGTTTAGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAGACCATAGTTTATGTGCATAGTGAAAAACAGATGTTTAGATA  383

seq1  AGAATCATTTCTATATTAATAATGTATATTAATGAGTCCTTTATTGATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCATTTCTATATTAATAATGTATATTAATGAGTCCTTTATTGATAC  433

seq1  TGTGATGCTATCTATACTTAAAACCTTCTTATTGCCATCTCACGGCACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGCTATCTATACTTAAAACCTTCTTATTGCCATCTCACGGCACAC  483

seq1  CATTTTGTTGGACATAATTTACTGTCTTCAAGATTCATGTTTTTCAAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTTGGACATAATTTACTGTCTTCAAGATTCATGTTTTTCAAGTT  533

seq1  AATCCTTCATGAATAGTAATCTATGGTATTTAAAACATTTTATTTTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTCATGAATAGTAATCTATGGTATTTAAAACATTTTATTTTTGCT  583

seq1  TTATAATGACCATATTAAGGGAATTTTCACATAGATAAAAAAGTCTCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATGACCATATTAAGGGAATTTTCACATAGATAAAAAAGTCTCTTA  633

seq1  AATTCTGTTAGCAAAGTTTAAGAATGTGAGCATATGATGGCATACTACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTTAGCAAAGTTTAAGAATGTGAGCATATGATGGCATACTACAG  683

seq1  AGCTTTTGAGAAACATTTGCTTTTCTACCAGCCCTATAGAATGGAAGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTGAGAAACATTTGCTTTTCTACCAGCCCTATAGAATGGAAGTTG  733

seq1  GATTGTTTAAGTAGATCTGCCAAAGGTAAAGAAAAAAATTCCAATATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTTAAGTAGATCTGCCAAAGGTAAAGAAAAAAATTCCAATATTTT  783

seq1  ACATGCAAATGACTTCTTCATACAAACATCTGTTCATACTAATTTATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAAATGACTTCTTCATACAAACATCTGTTCATACTAATTTATGAA  833

seq1  TGATATAAATCTACAAGTAACAAAGGCATATAGTTGCCTGTATGGAAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAAATCTACAAGTAACAAAGGCATATAGTTGCCTGTATGGAAATG  883

seq1  GTAAACAATAATGAGGACAGGTCAATATAATATCATTTTATTTACTATGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAATAATGAGGACAGGTCAATATAATATCATTTTATTTACTATGT  933

seq1  CATAGATAGTATGTATAACATATGAGTATTATATTAAAAATGTACACATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATAGTATGTATAACATATGAGTATTATATTAAAAATGTACACATT  983

seq1  ATGCTTATATCATATATATATGTATTATATATAATCCATTATATATATAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTATATCATATATATATGTATTATATATAATCCATTATATATATAT  1033

seq1  CCTTCTGTGCTACTGTCTTTAAATGTGTGTACATGCAGGATACAGTGGCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGTGCTACTGTCTTTAAATGTGTGTACATGCAGGATACAGTGGCA  1083

seq1  CACGCCTTTAATATTAGCATGTGTGAGAAGAACACAGGCATTTTTTTGTG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCTTTAATATTAGCATGTGTGAGAAGAACACAGGCATTTTTTTGTG  1133

seq1  AGTTTGCAGCCACCCTGGATTACATATTGAATTC  1184
      ||||||||||||||||||||||||||||||||||
seq2  AGTTTGCAGCCACCCTGGATTACATATTGAATTC  1167

seq1: chr3_71079946_71081075
seq2: B6Ng01-026I24.g_66_1178

seq1  GAATTCATTTAAATATACAAATTGTGTTAATGAGATAGGACAAATTTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTAAATATACAAATTGTGTTAATGAGATAGGACAAATTTTGA  50

seq1  TATTTTTTCAGTAATGTGATTTGTAAAAAGAAACAAATTGAATATCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTCAGTAATGTGATTTGTAAAAAGAAACAAATTGAATATCTGAG  100

seq1  CATATCATTAGCTAAACTAAAAACATAAAGGGGAATATTATTCAAAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCATTAGCTAAACTAAAAACATAAAGGGGAATATTATTCAAAGAAT  150

seq1  ATTATACAATGAAATCTTGTATCTATTTGATATAATAACCCATAGCAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACAATGAAATCTTGTATCTATTTGATATAATAACCCATAGCAAAA  200

seq1  TAGGAATTATTGTAAATTGCTGAAACAGATATCTTAAAATGGTGAATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATTATTGTAAATTGCTGAAACAGATATCTTAAAATGGTGAATCTT  250

seq1  TCTTTTACACCCAGAGATGTACTGGAATGCTCTAGTATCATTCTTTGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTACACCCAGAGATGTACTGGAATGCTCTAGTATCATTCTTTGCAT  300

seq1  TAAGCCTGAAACTTGAGATTGTGGAATAAAGAAGACAGTAAAGTTCCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTGAAACTTGAGATTGTGGAATAAAGAAGACAGTAAAGTTCCATG  350

seq1  ACTCAGCAAGGTCAGAATAGAGGATACCATGCCTGTTAAGAATCTCATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCAAGGTCAGAATAGAGGATACCATGCCTGTTAAGAATCTCATGA  400

seq1  ATTCTGTCCTGTGGTCAGGGTGGTGAGCTAAGAGAGGTATTCTTACAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTCCTGTGGTCAGGGTGGTGAGCTAAGAGAGGTATTCTTACAGGT  450

seq1  TTTTGGGAAACTTAAGAGAGAGTTAATGTCATATCCTGGAGGGTCTTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGAAACTTAAGAGAGAGTTAATGTCATATCCTGGAGGGTCTTATC  500

seq1  TCACTGTGATCCTTGAATCCTGGAAACCTGGGAAGGACACACATAATATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTGATCCTTGAATCCTGGAAACCTGGGAAGGACACACATAATATC  550

seq1  TCACTGAAGGACTGATGTTTTCTTTTATTGCTTTAGCATAGCTTAAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAAGGACTGATGTTTTCTTTTATTGCTTTAGCATAGCTTAAGATG  600

seq1  AATATTGTTCTTAGAGTTTGGCCTGATACATTGAAGTATCCTTTTTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGTTCTTAGAGTTTGGCCTGATACATTGAAGTATCCTTTTTTATT  650

seq1  CACATGATTTACCTGCCCATCTGATTTTTTTTTTTTTTTTAATGATTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGATTTACCTGCCCATCTGATTTTTTTTTTTTTTTTAATGATTGAG  700

seq1  CCTTTTGATACTAAGCCTCCAATCAGGTCAAAGAAAATGCTTTTCCTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGATACTAAGCCTCCAATCAGGTCAAAGAAAATGCTTTTCCTAAA  750

seq1  GTGTCTCCATAAAGGCAAGGTCAAGGTTGTTTTAATGTTAGGATAAGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCCATAAAGGCAAGGTCAAGGTTGTTTTAATGTTAGGATAAGTGA  800

seq1  TTTGCGATATTCCCATGTTAGAAAAAAAAAAAACTACTCTATTGAAATTC  850
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTGCGATATTCCCATGTTAG-AAAAAAAAAAACTACTCTATTGAAATTC  849

seq1  TAATAAAATTAATGATAAGTTGAAGAGAAACTATTGTAAATCAAATATGT  900
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAT-AAATTAATGATAAGTTGAAGAGAAACTATTGTAAATCAAATATGT  898

seq1  CATTTATTGCTTGATGGTTTGTTTTTTTCCCAGACTTATTGTTGTGGATC  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CATTTATTGCTTGATGGTTTG-TTTTTTCCCAGACTTATTGTTGTGGATC  947

seq1  ACCCATAGAGCTTTCCCCTTAGTTTTCCCATCTGTTTTTGTTGAGAAGTA  1000
      |||||| ||||||||||||||||||||||||||||||||  ||| |||||
seq2  ACCCATGGAGCTTTCCCCTTAGTTTTCCCATCTGTTTTTTGTGAAAAGTA  997

seq1  GTATTGATGTGTTTGTTATAAACCTAATCATGTGGGAAAAGTCACATTAA  1050
       ||||| |||||||| ||||| |  |||||| |||| | || |||| |||
seq2  -TATTGGTGTGTTTG-TATAACCTAAATCAT-TGGGGAGAGGCACA-TAA  1043

seq1  CAAATGATGCTCTCCAGTCTTAGGAGGTGCTCAGGCAGTTAAGAGTTTTC  1100
      |||| || |  ||||   ||||||||||||||  ||  |||||    |||
seq2  CAAA-GAAGTCCTCC--GCTTAGGAGGTGCTC-TGCGATTAAG----TTC  1085

seq1  CATGAAAACAGGAGGAACTAACTTTGATTC  1130
        || ||||| |  ||||||||||||||||
seq2  --TGGAAACAAGGAGAACTAACTTTGATTC  1113