BAC Information

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BAC

Clone NameB6Ng01-026J17
Chromosome3 (Build37)
Map Location 22,551,313 - 22,668,361
singlet/doubletdoublet
Overlap geneLOC100040378
Upstream gene7530428D23Rik, LOC100039465, LOC100040353, Tbl1xr1, LOC545506, LOC675593
Downstream geneLOC623751, LOC100039548
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026J17.bB6Ng01-026J17.g
ACCDH857603DH857604
length1,149825
definitionDH857603|Mus musculus domesticus DNA, BAC clone: B6Ng01-026J17, 5' end.DH857604|Mus musculus domesticus DNA, BAC clone: B6Ng01-026J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,667,195 - 22,668,361)(22,551,313 - 22,552,134)
sequence
gaattccacactaggtagagtttaagaaagcagacctcaaaaccctctcc
cacagtaacacaagtcctccaataaagacacgcctactccaacgaagcct
cacctcctaatagtgtcatttcctgtgggcaaacacatgaatccatggag
gccaaacctattcaaagtaccatggtgtatgtgcatgtgtatgccagttg
acacatgtacaaggcaactaatacatgttgacatatatggagggcagaag
tcaattcaggtgatggttatctggtactatccaccttggtttagaatcat
gatatcgcaatatgatgtagatctgagaattatccaaggctggttggcca
atgagcctcaggagttctgtttatttctccctagcacagggattacaaat
gcatgccacagttggatatttacataggttctatgggttcaactttagtg
tttatgcttttgaagtgagcaatctactgactgaactatccctcaagtcc
attgattaactttttcattgaaatttatataagtgcaatcatacagagag
tcatgagaggaatcaaactccctaggacactggggcagagcttaagaact
tttaaatgttgttggaaatgttagcgttgtgtgagttctctagactttta
gcatgagcaccctttgaaaactaccagaagtaggctagttgggcctttga
atggcaatatacaaacctttcattattacagacaagagcacagaaccatc
atctgagctgccctctatctggaaacaacccctcttctatcccaacagca
cagctgttttgaacactctgatcacttgggagaaccttgcagttgagtag
acctctgaaacaaagcctcagtgcctactccaggaagccttgcccagtat
gactactccaggcagccttttttagccttagatggcaggtattccaagca
acacagtattggtgaccattagatacccagaagtctgtgtttcagatgaa
acagttcactttcccagtaactaatgaaaagctgatgactgatatgactg
atatgactggacacgagttgtcttctagtcatgcccactgtgttgcaaca
tgggctagaaagtcttccaaatagtatttctttgccaactcatgttttt
gaattctctaggctttttgtatgttcatgggcatctctttctttaggttt
gggaagttttcatctataattttgttgaagatatttgctggacctttaag
ttgaatatcttcattctcatctactattatcagtaggtttggccttctta
tttttttttcttttttttattatatatttatatactttttattagatatt
ttcttcatttacatttcaaatgctctccccaaagccccctatacaccccc
cgccctggtccctgctccccacccacccactcccgcttcctggccctggc
tttcccctgtactggggcatatgatctttgcaatacttttagatacttat
atacttttatatacttttagtccttgcatacatattaagttttggatcta
ttacaaaggaggatatgaagagttttattaattatcttttttgtttgttt
gttttttgttttttttttcttcccattttttattaggtatttagctcatt
tacatttccaatgctataccaaaagaaccccatacccacccacccccact
cccctacccgcccactccccctttttggccctggcgttctcctgtttctg
gggcatataaagtttgtgtgtccaatgggcctctctttccagtgatggcc
gactaggccatcttttgatacatatgcagctagagtcaaaaagctccggg
gtactgttttagttcataatgttgattcatctatagggttgcagatccct
ttagctcctttgctacttttttcaggctcctcctttgggagctctgtgat
catccattagctgaatgtgggcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_22667195_22668361
seq2: B6Ng01-026J17.b_47_1195 (reverse)

seq1  AAAAACATTGAAAGTTGGCAAAGAAAATACTATTTGGGAAAAGACTTTTA  50
      ||||||||    ||||||||||| |||||||||||||   ||||||||  
seq2  AAAAACAT---GAGTTGGCAAAG-AAATACTATTTGG---AAGACTTT--  41

seq1  CTAGGCCCAATGTTGCAACACCAGTGGGCAATGGACTAGAAGACAACTCT  100
      ||||  || ||||||||||| |||||||||   |||||||||||||||| 
seq2  CTAG--CCCATGTTGCAACA-CAGTGGGCA--TGACTAGAAGACAACTC-  85

seq1  GTTGTCAGTCATATCAGTCATATCAGTCATCAGCTTTTCATTTAGTTACT  150
      ||   ||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTGTCCAGTCATATCAGTCATATCAGTCATCAGCTTTTCA-TTAGTTACT  134

seq1  GGGAAAGTGAACTGTTTCATCTTGAAACACAGACTTCTGGGTTATCTAAT  200
      ||||||||||||||||||||| ||||||||||||||||||| ||||||||
seq2  GGGAAAGTGAACTGTTTCATC-TGAAACACAGACTTCTGGG-TATCTAAT  182

seq1  GGTCACCAATACTGTGTTGCTTGGAATACCTGCCATCTAAGGCTAGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGTCACCAATACTGTGTTGCTTGGAATACCTGCCATCTAAGGCTAAAAAA  232

seq1  GGCTGCCTGGAGTAGTCATACTGGGGCAAGGCTTCCTGGAGTAGGCACTG  300
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGCTGCCTGGAGTAGTCATACT-GGGCAAGGCTTCCTGGAGTAGGCACTG  281

seq1  AGGCTTTGTTTCAGAGGTCTACTCAACTGCAAGGTTCT-CCAAGTGATCA  349
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGGCTTTGTTTCAGAGGTCTACTCAACTGCAAGGTTCTCCCAAGTGATCA  331

seq1  GAGTGTTCAAAACAGCTGTGCTGTTGGGATAGAAGAGGGGTTGTTTCCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTCAAAACAGCTGTGCTGTTGGGATAGAAGAGGGGTTGTTTCCAG  381

seq1  ATAGAGGGCAGCTCAGATGATGGTTCTGTGCTCTTGTCTGTAATAATGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGGGCAGCTCAGATGATGGTTCTGTGCTCTTGTCTGTAATAATGAA  431

seq1  AGGTTTGTATATTGCCATTCAAAGGCCCAACTAGCCTACTTCTGGTAGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGTATATTGCCATTCAAAGGCCCAACTAGCCTACTTCTGGTAGTT  481

seq1  TTCAAAGGGTGCTCATGCTAAAAGTCTAGAGAACTCACACAACGCTAACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGGGTGCTCATGCTAAAAGTCTAGAGAACTCACACAACGCTAACA  531

seq1  TTTCCAACAACATTTAAAAGTTCTTAAGCTCTGCCCCAGTGTCCTAGGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAACAACATTTAAAAGTTCTTAAGCTCTGCCCCAGTGTCCTAGGGA  581

seq1  GTTTGATTCCTCTCATGACTCTCTGTATGATTGCACTTATATAAATTTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATTCCTCTCATGACTCTCTGTATGATTGCACTTATATAAATTTCA  631

seq1  ATGAAAAAGTTAATCAATGGACTTGAGGGATAGTTCAGTCAGTAGATTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAGTTAATCAATGGACTTGAGGGATAGTTCAGTCAGTAGATTGC  681

seq1  TCACTTCAAAAGCATAAACACTAAAGTTGAACCCATAGAACCTATGTAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCAAAAGCATAAACACTAAAGTTGAACCCATAGAACCTATGTAAA  731

seq1  TATCCAACTGTGGCATGCATTTGTAATCCCTGTGCTAGGGAGAAATAAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAACTGTGGCATGCATTTGTAATCCCTGTGCTAGGGAGAAATAAAC  781

seq1  AGAACTCCTGAGGCTCATTGGCCAACCAGCCTTGGATAATTCTCAGATCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCCTGAGGCTCATTGGCCAACCAGCCTTGGATAATTCTCAGATCT  831

seq1  ACATCATATTGCGATATCATGATTCTAAACCAAGGTGGATAGTACCAGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATATTGCGATATCATGATTCTAAACCAAGGTGGATAGTACCAGAT  881

seq1  AACCATCACCTGAATTGACTTCTGCCCTCCATATATGTCAACATGTATTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCACCTGAATTGACTTCTGCCCTCCATATATGTCAACATGTATTA  931

seq1  GTTGCCTTGTACATGTGTCAACTGGCATACACATGCACATACACCATGGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTTGTACATGTGTCAACTGGCATACACATGCACATACACCATGGT  981

seq1  ACTTTGAATAGGTTTGGCCTCCATGGATTCATGTGTTTGCCCACAGGAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAATAGGTTTGGCCTCCATGGATTCATGTGTTTGCCCACAGGAAA  1031

seq1  TGACACTATTAGGAGGTGAGGCTTCGTTGGAGTAGGCGTGTCTTTATTGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTATTAGGAGGTGAGGCTTCGTTGGAGTAGGCGTGTCTTTATTGG  1081

seq1  AGGACTTGTGTTACTGTGGGAGAGGGTTTTGAGGTCTGCTTTCTTAAACT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTGTGTTACTGTGGGAGAGGGTTTTGAGGTCTGCTTTCTTAAACT  1131

seq1  CTACCTAGTGTGGAATTC  1167
      ||||||||||||||||||
seq2  CTACCTAGTGTGGAATTC  1149

seq1: chr3_22551313_22552134
seq2: B6Ng01-026J17.g_66_890

seq1  GAATTCTCTAGGCTTTTTGTATGTTCATGGGCATCTCTTTCTTTAGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGGCTTTTTGTATGTTCATGGGCATCTCTTTCTTTAGGTTT  50

seq1  GGGAAGTTTTCATCTATAATTTTGTTGAAGATATTTGCTGGACCTTTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTTTTCATCTATAATTTTGTTGAAGATATTTGCTGGACCTTTAAG  100

seq1  TTGAATATCTTCATTCTCATCTACTATTATCAGTAGGTTTGGCCTTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATATCTTCATTCTCATCTACTATTATCAGTAGGTTTGGCCTTCTTA  150

seq1  TTTTTTTTTCTTTTTTTTATTATATATTTATATACTTTTTATTAGATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCTTTTTTTTATTATATATTTATATACTTTTTATTAGATATT  200

seq1  TTCTTCATTTACATTTCAAATGCTCTCCCCAAAGCCCCCTATACACCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATTTACATTTCAAATGCTCTCCCCAAAGCCCCCTATACACCCCC  250

seq1  CGCCCTGGTCCCTGCTCCCCACCCACCCACTCCCGCTTCCTGGCCCTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCTGGTCCCTGCTCCCCACCCACCCACTCCCGCTTCCTGGCCCTGGC  300

seq1  TTTCCCCTGTACTGGGGCATATGATCTTTGCAATACTTTTAGATACTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCTGTACTGGGGCATATGATCTTTGCAATACTTTTAGATACTTAT  350

seq1  ATACTTTTATATACTTTTAGTCCTTGCATACATATTAAGTTTTGGATCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTTATATACTTTTAGTCCTTGCATACATATTAAGTTTTGGATCTA  400

seq1  TTACAAAGGAGGATATGAAGAGTTTTATTAATTATCTTTTTTGTTTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAGGAGGATATGAAGAGTTTTATTAATTATCTTTTTTGTTTGTTT  450

seq1  GTTTTTTGTTTTTTTTTTCTTCCCATTTTTTATTAGGTATTTAGCTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGTTTTTTTTTTCTTCCCATTTTTTATTAGGTATTTAGCTCATT  500

seq1  TACATTTCCAATGCTATACCAAAAGAACCCCATACCCACCCACCCCCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCCAATGCTATACCAAAAGAACCCCATACCCACCCACCCCCACT  550

seq1  CCCCTACCCGCCCACTCCCCCTTTTTGGCCCTGGCGTTCTCCTG-TTCTG  599
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCCCTACCCGCCCACTCCCCCTTTTTGGCCCTGGCGTTCTCCTGTTTCTG  600

seq1  GGGCATATAAAGTTTGTGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATATAAAGTTTGTGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCC  650

seq1  GACTAGGCCATCTTTTGATACATATGCAGCTAGAGTC-AAGAGCTCCGGG  698
      ||||||||||||||||||||||||||||||||||||| || |||||||||
seq2  GACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAAAAGCTCCGGG  700

seq1  GTACTG-GTTAGTTCATAATGTTGATCCACCTATAGGGTTGCAGATCCCT  747
      ||||||  |||||||||||||||||| || ||||||||||||||||||||
seq2  GTACTGTTTTAGTTCATAATGTTGATTCATCTATAGGGTTGCAGATCCCT  750

seq1  TTAGCTCCTTGGCTAC-TTTCTCTAGCTCCTCCATTGGGAGCTCTGTGAT  796
      |||||||||| ||||| ||| ||  |||||||| ||||||||||||||||
seq2  TTAGCTCCTTTGCTACTTTTTTCAGGCTCCTCCTTTGGGAGCTCTGTGAT  800

seq1  CCATCCATTAGCTGAGTGTGGGCATC  822
       |||||||||||||| ||||||||||
seq2  -CATCCATTAGCTGAATGTGGGCATC  825