BAC Information

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BAC

Clone NameB6Ng01-026L13
Chromosome3 (Build37)
Map Location 144,219,688 - 144,327,690
singlet/doubletdoublet
Overlap geneHs2st1, Sep15, LOC435761
Upstream geneEG668889, EG621809, LOC100039938, LOC100039952, Lmo4, LOC545572
Downstream geneSh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1, 2410019A14Rik, Cyr61
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026L13.bB6Ng01-026L13.g
ACCDH857679DH857680
length9691,051
definitionDH857679|Mus musculus domesticus DNA, BAC clone: B6Ng01-026L13, 5' end.DH857680|Mus musculus domesticus DNA, BAC clone: B6Ng01-026L13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,219,688 - 144,220,663)(144,326,615 - 144,327,690)
sequence
gaattcaactccggagtttaattaaggagtccaaactagcccactgggct
gcatcagcaggcaggagcagcagctgcggcttataagaagcctacagaca
aaacaaagggagaagagaggctgccttcctttgatcttggggggtggggg
ggctgagtcctctcaagtctgtctaaagaagccctatgagggctcctctc
accgtacgtttgaggactcaacttaccacatcggcagcatctcccttact
gggctgggtcacaaggaaagcctgacttctgacttacaggtcatctcctg
cccatcttcccagattccaggggtcccactcatttcctctgcaggtacac
cgggaaagccatctaggtaaaagcatgcagtgctttgtggcaaatcactc
ccgccgagtgactttcagctaaagaagaagcgggaggggttggctggagg
tggagcgcagggaaaccgtggcagtgagtctgctggtcagagtactaagg
aggacacagttcagaatgagcaaagagccgggcagtgtaaggctgagaag
aaactaacgaagcattcaagacccgggtgaaggtcttaaccaatgctccc
gtgggctacacgggaaactcttgcaatgcacagaacattacagagaatcc
tgaggaggtaacaaagatactgcctttgctcagggcagagtcagctgtaa
atttaaggctacagtaatcctcttgtacacaaccaaaagaaacaaacaag
caaacaacaaacaaaaaatcgattgtttctagataacttgaacatgcccc
caaatgcagcttaggagtattacaaaagtatgggaaatatgcaatatata
acagaagaacatttacaatgccaggttctcagttaaaatcattgggaatg
tttggatagaggtaagaaatcttgttcatagaaccaaaatctcagtccat
aaagaacctcgagatgaca
gaattcagagggaaaaacagacggtttctcccgcagcaaagtgactgttt
tatatggcaggacatcggacaggctttctcagggtcagaccatggtggat
aactaatcgtagtcattaacaaggtaagaaggtgccagaactgtggggtc
ctaataggccattagtgcctgagaggagcacacacttctcgggaccatta
gcatctctgcagcggaggcacttcagtggattcttctcagagtgatgccc
tacgtcagttcttgctcaggctctgtgtgtgactgtccgtgggccacgct
cacatgttgaacgctacaaaagtgagcacaggggattttaagcctgggtg
tgatgaacttatataagtcactcaccttcactgcagcctggtgtctttct
tcccttacatctgtttgatggattgaaattgtatggatgaattaagcgtg
gattcttttgcattgtattctgtaaatgttttttttttccccacgatgga
aacatcccatcctgctggaaagttccttaagcaggaaagtaaacaactca
aaatagcttagggaagtccctgaaactgagcagattcactaagcccctcc
ctgcctgggtaagccatgtccctctgagcctaggggaacagagtggctaa
gacatctctcggaggagaaaagctgcagatactctgagagcagaccagct
gcctggaagaggtttagtgcagagtcaacggaagagaacactctctaacc
tgttgagctgcctgcaggctgggcaatgagctccaggtttccgggtttta
tgaactgtcactcatgctaggggagcctttggtgatgctgctgtctttga
gtcatttctgctcctgaagtacctctcacccacattccttaagaacccca
ataaactcaccgattaccagtgcactttggtatctgtattgggtctgcat
gattctattggggtgaattaaaacacccttcctgtttgtcagccacacat
gtaatgggcatttaaaactgctgctacgaagagcgtgaatctcgtgggct
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_144219688_144220663
seq2: B6Ng01-026L13.b_49_1017

seq1  GAATTCAACTCCGGAGTTTAATTAAGGAGTCCAAACTAGCCCACTGGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTCCGGAGTTTAATTAAGGAGTCCAAACTAGCCCACTGGGCT  50

seq1  GCATCAGCAGGCAGGAGCAGCAGCTGCGGCTTATAAGAAGCCTACAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGCAGGCAGGAGCAGCAGCTGCGGCTTATAAGAAGCCTACAGACA  100

seq1  AAACAAAGGGAGAAGAGAGGCTGCCTTCCTTTGATCTTGGGGGGTGGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGGGAGAAGAGAGGCTGCCTTCCTTTGATCTTGGGGGGTGGGGG  150

seq1  GGCTGAGTCCTCTCAAGTCTGTCTAAAGAAGCCCTATGAGGGCTCCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGTCCTCTCAAGTCTGTCTAAAGAAGCCCTATGAGGGCTCCTCTC  200

seq1  ACCGTACGTTTGAGGACTCAACTTACCACATCGGCAGCATCTCCCTTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTACGTTTGAGGACTCAACTTACCACATCGGCAGCATCTCCCTTACT  250

seq1  GGGCTGGGTCACAAGGAAAGCCTGACTTCTGACTTACAGGTCATCTCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGGTCACAAGGAAAGCCTGACTTCTGACTTACAGGTCATCTCCTG  300

seq1  CCCATCTTCCCAGATTCCAGGGGTCCCACTCATTTCCTCTGCAGGTACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTTCCCAGATTCCAGGGGTCCCACTCATTTCCTCTGCAGGTACAC  350

seq1  CGGGAAAGCCATCTAGGTAAAAGCATGCAGTGCTTTGTGGCAAATCACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAAAGCCATCTAGGTAAAAGCATGCAGTGCTTTGTGGCAAATCACTC  400

seq1  CCGCCGAGTGACTTTCAGCTAAAGAAGAAGCGGGAGGGGTTGGCTGGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCGAGTGACTTTCAGCTAAAGAAGAAGCGGGAGGGGTTGGCTGGAGG  450

seq1  TGGAGCGCAGGGAAACCGTGGCAGTGAGTCTGCTGGTCAGAGTACTAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCGCAGGGAAACCGTGGCAGTGAGTCTGCTGGTCAGAGTACTAAGG  500

seq1  AGGACACAGTTCAGAATGAGCAAAGAGCCGGGCAGTGTAAGGCTGAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACAGTTCAGAATGAGCAAAGAGCCGGGCAGTGTAAGGCTGAGAAG  550

seq1  AAACTAACGAAGCATTCAAGACCCGGGTGAAGGTCTTAACCAATGCTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAACGAAGCATTCAAGACCCGGGTGAAGGTCTTAACCAATGCTCCC  600

seq1  GTGGGCTACACGGGAAACTCTTGCAATGCACAGAACATTACAGAGAATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTACACGGGAAACTCTTGCAATGCACAGAACATTACAGAGAATCC  650

seq1  TGAGGAGGTAACAAAGATACTGCCTTTGCTCAGGGCAGAGTCAGCTGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGGTAACAAAGATACTGCCTTTGCTCAGGGCAGAGTCAGCTGTAA  700

seq1  ATTAAAGGCTACAGTAATCC-CCTGTACACAACCAAAAGAAACAAACAAG  749
      ||| |||||||||||||||| | |||||||||||||||||||||||||||
seq2  ATTTAAGGCTACAGTAATCCTCTTGTACACAACCAAAAGAAACAAACAAG  750

seq1  CAAACAAACAAACAAAAAATCGATTGTTTCTAGATAACTTGAACATGCCC  799
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAC-AACAAACAAAAAATCGATTGTTTCTAGATAACTTGAACATGCCC  799

seq1  CCAAATGCAGCTTAGGAGTATTTACAAAAATAT-GGAAATATGCAATATA  848
      |||||||||||||||||||| |||||||| ||| ||||||||||||||||
seq2  CCAAATGCAGCTTAGGAGTA-TTACAAAAGTATGGGAAATATGCAATATA  848

seq1  TAACAGAAGACAATTCACAATGCCAGGCTCCCAGTTAAAAATCATTGGGA  898
      ||||||||||  ||| ||||||||||| || ||||| |||||||||||||
seq2  TAACAGAAGAACATTTACAATGCCAGGTTCTCAGTT-AAAATCATTGGGA  897

seq1  TAGTTTGGATAGAGGTAAGAAAGTCTTGTTCATAAGAAACAGAAACGCCA  948
        |||||||||||||||||||| |||||||||| |||| || |||   ||
seq2  ATGTTTGGATAGAGGTAAGAAA-TCTTGTTCAT-AGAACCA-AAATCTCA  944

seq1  GTCCATAAAAAGAACCTCAGAGATGACA  976
      ||||||  |||||||||| |||||||||
seq2  GTCCAT--AAAGAACCTC-GAGATGACA  969

seq1: chr3_144326615_144327690
seq2: B6Ng01-026L13.g_71_1121 (reverse)

seq1  GAGCCCAAACGATGATTCAACGCTCTTTCGTAGCAGCAGTTTCTAAATGC  50
      ||||||  |||| ||||| |||||| |||||||||||||||| |||||||
seq2  GAGCCC--ACGA-GATTC-ACGCTC-TTCGTAGCAGCAGTTT-TAAATGC  44

seq1  CCACTACAATGTGTTGCCTGACAAAACAGGAAGGTGTGTATCTAATTCAC  100
      ||| ||| ||||| || ||||| ||||||||||| |||| | ||||||||
seq2  CCATTAC-ATGTG-TGGCTGAC-AAACAGGAAGG-GTGT-TTTAATTCAC  89

seq1  CCCAGATAAAGAACTCATGACAGACCCAAATACAGATACCAAAGTGCAAC  150
      ||||   | |||| ||||| ||||||| ||||||||||||||||||| ||
seq2  CCCA---ATAGAA-TCATG-CAGACCC-AATACAGATACCAAAGTGC-AC  132

seq1  TGGTAAATCGGTGAGTTTTATTGGGGTTACTTAAAGGAATGTGGGTGAGA  200
      |||| |||||||||| |||||||||||| ||| |||||||||||||||||
seq2  TGGT-AATCGGTGAG-TTTATTGGGGTT-CTT-AAGGAATGTGGGTGAGA  178

seq1  GGTTACTTACAGGAGCAGAAATGACTCAAAGACAGCAGCATCACCAAAGG  250
      || ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GG-TACTT-CAGGAGCAGAAATGACTCAAAGACAGCAGCATCACCAAAGG  226

seq1  CTCCCCTAGCATGAGTGACAGTTCATAAAACCCGGGAAACCTGGAGCTCA  300
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTCCCCTAGCATGAGTGACAGTTCATAAAACCC-GGAAACCTGGAGCTCA  275

seq1  TTGCCCAGCCTGCAGGCAGCTCAACAGGTTAGAGAGTGTTCTCTTCCGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCAGCCTGCAGGCAGCTCAACAGGTTAGAGAGTGTTCTCTTCCGTT  325

seq1  GACTCTGCACTAAACCTCTTCCAGGCAGCTGGTCTGCTCTCAGAGTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGCACTAAACCTCTTCCAGGCAGCTGGTCTGCTCTCAGAGTATCT  375

seq1  GCAGCTTTTCTCCTCCGAGAGATGTCTTAGCCACTCTGTTCCCCTAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTTTCTCCTCCGAGAGATGTCTTAGCCACTCTGTTCCCCTAGGCT  425

seq1  CAGAGGGACATGGCTTACCCAGGCAGGGAGGGGCTTAGTGAATCTGCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGACATGGCTTACCCAGGCAGGGAGGGGCTTAGTGAATCTGCTCA  475

seq1  GTTTCAGGGACTTCCCTAAGCTATTTTGAGTTGTTTACTTTCCTGCTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGGGACTTCCCTAAGCTATTTTGAGTTGTTTACTTTCCTGCTTAA  525

seq1  GGAACTTTCCAGCAGGATGGGATGTTTCCATCGTGGGGAAAAAAAAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTTCCAGCAGGATGGGATGTTTCCATCGTGGGGAAAAAAAAAACA  575

seq1  TTTACAGAATACAATGCAAAAGAATCCACGCTTAATTCATCCATACAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGAATACAATGCAAAAGAATCCACGCTTAATTCATCCATACAATT  625

seq1  TCAATCCATCAAACAGATGTAAGGGAAGAAAGACACCAGGCTGCAGTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCCATCAAACAGATGTAAGGGAAGAAAGACACCAGGCTGCAGTGAA  675

seq1  GGTGAGTGACTTATATAAGTTCATCACACCCAGGCTTAAAATCCCCTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTGACTTATATAAGTTCATCACACCCAGGCTTAAAATCCCCTGTG  725

seq1  CTCACTTTTGTAGCGTTCAACATGTGAGCGTGGCCCACGGACAGTCACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTTTGTAGCGTTCAACATGTGAGCGTGGCCCACGGACAGTCACAC  775

seq1  ACAGAGCCTGAGCAAGAACTGACGTAGGGCATCACTCTGAGAAGAATCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCCTGAGCAAGAACTGACGTAGGGCATCACTCTGAGAAGAATCCA  825

seq1  CTGAAGTGCCTCCGCTGCAGAGATGCTAATGGTCCCGAGAAGTGTGTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTGCCTCCGCTGCAGAGATGCTAATGGTCCCGAGAAGTGTGTGCT  875

seq1  CCTCTCAGGCACTAATGGCCTATTAGGACCCCACAGTTCTGGCACCTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAGGCACTAATGGCCTATTAGGACCCCACAGTTCTGGCACCTTCT  925

seq1  TACCTTGTTAATGACTACGATTAGTTATCCACCATGGTCTGACCCTGAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGTTAATGACTACGATTAGTTATCCACCATGGTCTGACCCTGAGA  975

seq1  AAGCCTGTCCGATGTCCTGCCATATAAAACAGTCACTTTGCTGCGGGAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGTCCGATGTCCTGCCATATAAAACAGTCACTTTGCTGCGGGAGA  1025

seq1  AACCGTCTGTTTTTCCCTCTGAATTC  1076
      ||||||||||||||||||||||||||
seq2  AACCGTCTGTTTTTCCCTCTGAATTC  1051