BAC Information

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BAC

Clone NameB6Ng01-027C10
Chromosome3 (Build37)
Map Location 98,341,837 - 98,342,871
singlet/doubletsinglet
Overlap genenone
Upstream geneChd1l, Fmo5, Prkab2, Pde4dip, Sec22b, EG433632, LOC100042975, Notch2, Adam30, LOC622561, Reg4, Hmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4
Downstream geneLOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3, LOC668557, Wars2, Tbx15, M6pr-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027C10.bB6Ng01-027C10.g
ACCDH857977DH857978
length8501,020
definitionDH857977|Mus musculus domesticus DNA, BAC clone: B6Ng01-027C10, 5' end.DH857978|Mus musculus domesticus DNA, BAC clone: B6Ng01-027C10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaatccaggacaaattctgccgtatgttatgtcaaatttgcctgt
tactgtatggggaagagatctcttgtcacagatgggagttataatgtgca
gtcctaatgaggcagtgaccaagcagatgctcagagaaggattttttgcc
tggtcatgggctaggaaagaaaggacaaggtatgaagacttttgaaggtc
ctaaacctcactctaacacaagaggtttggggtattttcagtaattgcca
ctatcttgcctgcaccctatgctgataaaattcaatggcttaatgatatt
ccggtgtgggttgatcagtggtctttacctaaagagaaaatagaagctgc
ctcttcgctagtgcaggagcaattagcggcaggacatttagtagaacctc
agtctccttggaatactccaatttttgttatcaagaaaaaatctgctaaa
tggagattgttacaagatctaagaaaggttaatgaaaccatgatacctat
ggaagctttacaacctgggcttccatctccggtagccattcctaaaggat
attataaaattgtggtagatctgaaggactgtttctttactattccttta
caccctgaggattgtgaaagatttgcttttattattccttttataaattt
taaagaacctatgaagagatatcaatggacagtttctcccacagagcatg
gctaatcgtcctaccttatgccaaaagtttgtgggcacaagccattcagc
ctgcgagacaacaatggcctatgatttacatcattcattacacagatgat
gtcttgatggcgggaaaagacccccatcttttttttttgctttgtgttat

gaattctgttcaaggaacctgaaacatgaaaacagggcagtactcaaata
aacaagcacactcacagaatctggtactcttgggatcatcaaattattta
ctattttaacaaagagatgtaaaatagcactaaaatggaaagtgtgcaca
agctgggcagtggtggcccatgctttaatcccagcatttgggaggcatag
gcatgcatatttctgagttagaggcaagcctgggatacatagtgagttcc
aggacagccaggactacacacagaaaccctggcttgaaaaaacaaaaaat
aaagtgtgcacaaacatcagaaacatagttcagattgtctatgagcattg
ggatggatagatagatagatagatagataatcatttatcacatatatgta
cagttactagactgtaaaagagaccatgtggcttaaaggattaagtgctc
accttctcctgcctcagaactaagtcatttaagctcattatcttcttcga
gttttgcttattaaagacagcaaaagtagctagcttttgaccacaattcc
ccaggaaataaatagaacaaatgtctccaactcagtaataagttggatca
aggaatctttaatatttcaagcatgggactccaggaaatcaaataaaccc
attaaaaaatggggctcagagctaaacaacgaattctcacccgaggaata
gcgaatggctgagaaggacctgaaaaaaaagttcagcatccttaatcatc
agggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcag
aatggctaagatcaaaaattcggtgacagcagatgctggcgaggatgtgg
agaagagacactccttcattgttggtgggattgcaagcttgtacaaccac
tctggaatcagtctggcagtccttagaaaatagacatagtacaacccgaa
gatcaagaatacttctctgtgcatatcccagaaaatgtctactggtaaaa
aggaactgcccactatgttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_98341837_98342871
seq2: B6Ng01-027C10.g_69_1088 (reverse)

seq1  GAACATAGTGGGGCAAGTTTCCTTATTACCAGTTGGAACATCTTCTGGGT  50
      ||||||||| |||||   |||||| |||||||| |  |||| ||||||| 
seq2  GAACATAGT-GGGCA--GTTCCTTTTTACCAGTAG--ACATTTTCTGGG-  44

seq1  ATATGCCCAGGAGAGGTATTGCTGGATCTTCCGGTTGTACTATGTCTAAT  100
      |||||| || |||| ||||| || ||||||| ||||||||||||||| ||
seq2  ATATGCACA-GAGAAGTATT-CTTGATCTTCGGGTTGTACTATGTCT-AT  91

seq1  TTTCTAAGGAACTGCCAGACTGATTTCCAGAGTGGTTGTACAAGCTTGCA  150
      ||||||||| ||||||||||||| ||||||||||||||||||||||||||
seq2  TTTCTAAGG-ACTGCCAGACTGA-TTCCAGAGTGGTTGTACAAGCTTGCA  139

seq1  ATCCCACCAACAATGGAGGAGTGTTCTTCTTTCTCCACATCCTCGCCAGC  200
      ||||||||||||||| ||||||| |||   ||||||||||||||||||||
seq2  ATCCCACCAACAATGAAGGAGTG-TCT--CTTCTCCACATCCTCGCCAGC  186

seq1  ATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGG  250
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTGTCACC-GAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGG  235

seq1  TGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGC  285

seq1  TGAACTTTTTTTTCAGGTCCTTCTCAGCCATTCGCTATTCCTCGGGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTTTTTTCAGGTCCTTCTCAGCCATTCGCTATTCCTCGGGTGAG  335

seq1  AATTCGTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGTTTATTTGATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCGTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGTTTATTTGATTT  385

seq1  CCTGGAGTCCCATGCTTGAAATATTAAAGATTCCTTGATCCAACTTATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGTCCCATGCTTGAAATATTAAAGATTCCTTGATCCAACTTATTA  435

seq1  CTGAGTTGGAGACATTTGTTCTATTTATTTCCTGGGGAATTGTGGTCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTGGAGACATTTGTTCTATTTATTTCCTGGGGAATTGTGGTCAAA  485

seq1  AGCTAGCTACTTTTGCTGTCTTTAATAAGCAAAACTCGAAGAAGATAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCTACTTTTGCTGTCTTTAATAAGCAAAACTCGAAGAAGATAATG  535

seq1  AGCTTAAATGACTTAGTTCTGAGGCAGGAGAAGGTGAGCACTTAATCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAAATGACTTAGTTCTGAGGCAGGAGAAGGTGAGCACTTAATCCTT  585

seq1  TAAGCCACATGGTCTCTTTTACAGTCTAGTAACTGTACATATATGTGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCACATGGTCTCTTTTACAGTCTAGTAACTGTACATATATGTGATA  635

seq1  AATGATTATCTATCTATCTATCTATCTATCCATCCCAATGCTCATAGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTATCTATCTATCTATCTATCTATCCATCCCAATGCTCATAGACA  685

seq1  ATCTGAACTATGTTTCTGATGTTTGTGCACACTTTATTTTTTGTTTTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAACTATGTTTCTGATGTTTGTGCACACTTTATTTTTTGTTTTTTC  735

seq1  AAGCCAGGGTTTCTGTGTGTAGTCCTGGCTGTCCTGGAACTCACTATGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGGGTTTCTGTGTGTAGTCCTGGCTGTCCTGGAACTCACTATGTA  785

seq1  TCCCAGGCTTGCCTCTAACTCAGAAATATGCATGCCTATGCCTCCCAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGCTTGCCTCTAACTCAGAAATATGCATGCCTATGCCTCCCAAAT  835

seq1  GCTGGGATTAAAGCATGGGCCACCACTGCCCAGCTTGTGCACACTTTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATTAAAGCATGGGCCACCACTGCCCAGCTTGTGCACACTTTCCA  885

seq1  TTTTAGTGCTATTTTACATCTCTTTGTTAAAATAGTAAATAATTTGATGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTGCTATTTTACATCTCTTTGTTAAAATAGTAAATAATTTGATGA  935

seq1  TCCCAAGAGTACCAGATTCTGTGAGTGTGCTTGTTTATTTGAGTACTGCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGAGTACCAGATTCTGTGAGTGTGCTTGTTTATTTGAGTACTGCC  985

seq1  CTGTTTTCATGTTTCAGGTTCCTTGAACAGAATTC  1035
      |||||||||||||||||||||||||||||||||||
seq2  CTGTTTTCATGTTTCAGGTTCCTTGAACAGAATTC  1020