BAC Information

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BAC

Clone NameB6Ng01-027K03
Chromosome3 (Build37)
Map Location 119,676,717 - 119,806,204
singlet/doubletdoublet
Overlap genenone
Upstream geneDpyd, LOC100043275, LOC100043278, Ptbp2
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027K03.bB6Ng01-027K03.g
ACCDH858327DH858328
length1,0301,024
definitionDH858327|Mus musculus domesticus DNA, BAC clone: B6Ng01-027K03, 5' end.DH858328|Mus musculus domesticus DNA, BAC clone: B6Ng01-027K03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,676,717 - 119,677,746)(119,805,171 - 119,806,204)
sequence
gaattctggcattcattcctggacattggcttggatatacacacagaaaa
agaaagaaagaaaaaaaaaggatacttttggtcatcaaaggattaccatg
tcaggacctttctgccagatgagagaacaaagactcttggccatcttttc
tcactcctggctttctctctcccttctaatcttgtattttttgcccagtc
acatctactcttttccatattgtatatagatgctctctcatagcactgac
ttagtgaagcagtgggggcaaagactgaatggaaatcaaagtatacatcg
ttgacatccatatctttacggtaaaaggttttccgtcccattctataagg
aaaagacaaacaaaacatagagatccaaacagacaagcaaaaaaaaaagg
aaatgaaaagacatttaagacatttaagtttctttttcttaaaaaggaag
gacggaaagaacgaatgaaagaagccaagaaagaaagaaagagaataaaa
ataggaaaaatactgcttcaagttgtctggacttatcagaatgaatggat
atctgcaactaacagaggtggagaggtaggggcattgccagaaatagatc
aagacgtggaataagggaggcatccaagaatcaatagggatttagctgca
tctcaaaacattggaaatatggaacctgaagaggctacttcctgtagcca
agtaggaactccaatggaatgattgggataccaacccacccacacaactt
tccacttcaaagtcattctgcctataagaaatgcaggggcagggggtgga
gcagagattgagggaatggccaaacaatagcctgccaacttgagacccat
cccatgggcatgcaccaaatcctgacactattaatgatattctgctatat
ttgcaaacatggctgtcctcccagagactccacccggcagctgattcaga
cagatgtagaacacccacaaccaacagtggatggagctgggcactctttt
tgaaaaaaaggaggaaaggagtggtgagcc
gaattccaggacagccaggactacacagagaaaccctgtctcaaaaaaaa
aaaaagtttcctattgtgattttgtcatttttccacatatataaaaatgt
aataaaactacatatgtaaagacatatgcattcagatttttatatactct
atgagatctataattttttcattaaatattgactttctttactcttcaaa
attggtttatttttaaagacaattttgtctaatagctgtctccacagcta
tgtctctgactcacagctatatctgataatttggttcagttatttgctgg
aagcactcagcctttaatgtctcattctcatatacctaatgaatgaaggc
attttgaaaataccacacccctcagtttggttacctatctgaatcaagaa
gactcttattttgacttgcatatctatgccattcacgttttactgtgatc
attgccacatttggggttagttagttagatcatttaccacattccttatc
acaatcctgtcttgtctctgcttctttataatttcctccccaccctgtct
ctttgaattcatcaggcactctatgttttactttgcttccacaatgtcta
cagcatcatatatttattcagtcagacagaaacacgcttttataacaagt
tgtagtgacttgatataacataatcattttttggacacctgccagtatgg
tccaagtgtaactggacagccagtggatttccttcatgagataaatccct
gggatatagaaaacttctctatacaagttgtcttaaaagaaaagagtaaa
gacaatgaaatgaaatatctcttgggataatgatggataacttatcagta
tattagaacacacaatgactgagtcaagagcctctgatctactcaaacag
atataaccaaaatcaccatatagactcacaactaaaaactatttattcag
aatcacagattggaataaacagagaaatattcaaaattgtttgagggtat
ggtgcagaataactcttctttgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_119676717_119677746
seq2: B6Ng01-027K03.b_40_1069

seq1  GAATTCTGGCATTCATTCCTGGACATTGGCTTGGATATACACACAGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCATTCATTCCTGGACATTGGCTTGGATATACACACAGAAAA  50

seq1  AGAAAGAAAGAAAAAAAAAGGATACTTTTGGTCATCAAAGGATTACCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAAAAAAAGGATACTTTTGGTCATCAAAGGATTACCATG  100

seq1  TCAGGACCTTTCTGCCAGATGAGAGAACAAAGACTCTTGGCCATCTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACCTTTCTGCCAGATGAGAGAACAAAGACTCTTGGCCATCTTTTC  150

seq1  TCACTCCTGGCTTTCTCTCTCCCTTCTAATCTTGTATTTTTTGCCCAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCTGGCTTTCTCTCTCCCTTCTAATCTTGTATTTTTTGCCCAGTC  200

seq1  ACATCTACTCTTTTCCATATTGTATATAGATGCTCTCTCATAGCACTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTACTCTTTTCCATATTGTATATAGATGCTCTCTCATAGCACTGAC  250

seq1  TTAGTGAAGCAGTGGGGGCAAAGACTGAATGGAAATCAAAGTATACATCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGAAGCAGTGGGGGCAAAGACTGAATGGAAATCAAAGTATACATCG  300

seq1  TTGACATCCATATCTTTACGGTAAAAGGTTTTCCGTCCCATTCTATAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATCCATATCTTTACGGTAAAAGGTTTTCCGTCCCATTCTATAAGG  350

seq1  AAAAGACAAACAAAACATAGAGATCCAAACAGACAAGCAAAAAAAAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACAAACAAAACATAGAGATCCAAACAGACAAGCAAAAAAAAAAGG  400

seq1  AAATGAAAAGACATTTAAGACATTTAAGTTTCTTTTTCTTAAAAAGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAAGACATTTAAGACATTTAAGTTTCTTTTTCTTAAAAAGGAAG  450

seq1  GACGGAAAGAACGAATGAAAGAAGCCAAGAAAGAAAGAAAGAGAATAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGAAAGAACGAATGAAAGAAGCCAAGAAAGAAAGAAAGAGAATAAAA  500

seq1  ATAGGAAAAATACTGCTTCAAGTTGTCTGGACTTATCAGAATGAATGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAAAATACTGCTTCAAGTTGTCTGGACTTATCAGAATGAATGGAT  550

seq1  ATCTGCAACTAACAGAGGTGGAGAGGTAGGGGCATTGCCAGAAATAGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCAACTAACAGAGGTGGAGAGGTAGGGGCATTGCCAGAAATAGATC  600

seq1  AAGACGTGGAATAAGGGAGGCATCCAAGAATCAATAGGGATTTAGCTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACGTGGAATAAGGGAGGCATCCAAGAATCAATAGGGATTTAGCTGCA  650

seq1  TCTCAAAACATTGGAAATATGGAACCTGAAGAGGCTACTTCCTGTAGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAACATTGGAAATATGGAACCTGAAGAGGCTACTTCCTGTAGCCA  700

seq1  AGTAGGAACTCCAATGGAATGATTGGGATACCAACCCACCCACACAACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGAACTCCAATGGAATGATTGGGATACCAACCCACCCACACAACTT  750

seq1  TCCACTTCAAAGTCATTCTGCCTATAAGAAATGCAGGGGCAGGGGGTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTCAAAGTCATTCTGCCTATAAGAAATGCAGGGGCAGGGGGTGGA  800

seq1  GCAGAGATTGAGGGAATGGCCAAACAATAGCCTGCCAACTTGAGACCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGATTGAGGGAATGGCCAAACAATAGCCTGCCAACTTGAGACCCAT  850

seq1  CCCATGGGCATGCACCAAATCCCTGACACTATTAATGATATTCTGCTATA  900
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCCATGGGCATGCACCAAAT-CCTGACACTATTAATGATATTCTGCTATA  899

seq1  TTTGCAAACATGGCTGTCCTCCAAGAGACTCCACCCGGCAGCTGATTCAG  950
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTGCAAACATGGCTGTCCTCCCAGAGACTCCACCCGGCAGCTGATTCAG  949

seq1  ACAGATGTAG-ACACCCACAACCAAACAGTGGATGGAGCTTGGGCACTCT  999
      |||||||||| |||||||||||| ||||||||||||||| ||||||||||
seq2  ACAGATGTAGAACACCCACAACC-AACAGTGGATGGAGC-TGGGCACTCT  997

seq1  TATGGAAAAACAGGAGG-AAGGA-TGGTGAGCC  1030
      | | |||||| |||||| ||||| |||||||||
seq2  TTTTGAAAAAAAGGAGGAAAGGAGTGGTGAGCC  1030

seq1: chr3_119805171_119806204
seq2: B6Ng01-027K03.g_69_1092 (reverse)

seq1  AGCAAAGAAGATGTTATACTTGCATCCATACCCTCAAACAATTTTGTAAT  50
      ||||||||||| ||||| | |||| ||||||||||||||||||||| |||
seq2  AGCAAAGAAGA-GTTATTC-TGCA-CCATACCCTCAAACAATTTTG-AAT  46

seq1  ATTTTCTTCTGTTTATTTCCAATTCTGTGATTTCTG-ATATATAGTTTTT  99
      ||||   |||||||| |||||| ||||||| ||||| ||| |||||||||
seq2  ATTT--CTCTGTTTA-TTCCAA-TCTGTGA-TTCTGAATAAATAGTTTTT  91

seq1  AGTTGTGAGTCTATATGGTGATTTTTGGTTATATCTGTTTGAGTAGATCA  149
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGTTGTGAGTCTATATGGTGA-TTTTGGTTATATCTGTTTGAGTAGATCA  140

seq1  GAGGCTCTTGACTCAGTCATTGTGTGTTCTAATATACTGATTAAGTTATC  199
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAGGCTCTTGACTCAGTCATTGTGTGTTCTAATATACTGA-TAAGTTATC  189

seq1  CATCATTATCCCAAGAGATATTTCATTTCATTGTCTTTACTCTTTTCTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTATCCCAAGAGATATTTCATTTCATTGTCTTTACTCTTTTCTTT  239

seq1  TAAGACAACTTGTATAGAGAAGTTTTCTATATCCCAGGGATTTATCTCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAACTTGTATAGAGAAGTTTTCTATATCCCAGGGATTTATCTCAT  289

seq1  GAAGGAAATCCACTGGCTGTCCAGTTACACTTGGACCATACTGGCAGGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAATCCACTGGCTGTCCAGTTACACTTGGACCATACTGGCAGGTG  339

seq1  TCCAAAAAATGATTATGTTATATCAAGTCACTACAACTTGTTATAAAAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAAATGATTATGTTATATCAAGTCACTACAACTTGTTATAAAAGC  389

seq1  GTGTTTCTGTCTGACTGAATAAATATATGATGCTGTAGACATTGTGGAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCTGTCTGACTGAATAAATATATGATGCTGTAGACATTGTGGAAG  439

seq1  CAAAGTAAAACATAGAGTGCCTGATGAATTCAAAGAGACAGGGTGGGGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAAAACATAGAGTGCCTGATGAATTCAAAGAGACAGGGTGGGGAG  489

seq1  GAAATTATAAAGAAGCAGAGACAAGACAGGATTGTGATAAGGAATGTGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTATAAAGAAGCAGAGACAAGACAGGATTGTGATAAGGAATGTGGT  539

seq1  AAATGATCTAACTAACTAACCCCAAATGTGGCAATGATCACAGTAAAACG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATCTAACTAACTAACCCCAAATGTGGCAATGATCACAGTAAAACG  589

seq1  TGAATGGCATAGATATGCAAGTCAAAATAAGAGTCTTCTTGATTCAGATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGCATAGATATGCAAGTCAAAATAAGAGTCTTCTTGATTCAGATA  639

seq1  GGTAACCAAACTGAGGGGTGTGGTATTTTCAAAATGCCTTCATTCATTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACCAAACTGAGGGGTGTGGTATTTTCAAAATGCCTTCATTCATTAG  689

seq1  GTATATGAGAATGAGACATTAAAGGCTGAGTGCTTCCAGCAAATAACTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGAGAATGAGACATTAAAGGCTGAGTGCTTCCAGCAAATAACTGA  739

seq1  ACCAAATTATCAGATATAGCTGTGAGTCAGAGACATAGCTGTGGAGACAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATTATCAGATATAGCTGTGAGTCAGAGACATAGCTGTGGAGACAG  789

seq1  CTATTAGACAAAATTGTCTTTAAAAATAAACCAATTTTGAAGAGTAAAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAGACAAAATTGTCTTTAAAAATAAACCAATTTTGAAGAGTAAAGA  839

seq1  AAGTCAATATTTAATGAAAAAATTATAGATCTCATAGAGTATATAAAAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAATATTTAATGAAAAAATTATAGATCTCATAGAGTATATAAAAAT  889

seq1  CTGAATGCATATGTCTTTACATATGTAGTTTTATTACATTTTTATATATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGCATATGTCTTTACATATGTAGTTTTATTACATTTTTATATATG  939

seq1  TGGAAAAATGACAAAATCACAATAGGAAACTTTTTTTTTTTTTGAGACAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAATGACAAAATCACAATAGGAAACTTTTTTTTTTTTTGAGACAG  989

seq1  GGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAATTC  1034
      |||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAATTC  1024