BAC Information

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BAC

Clone NameB6Ng01-027K09
Chromosome3 (Build37)
Map Location 41,058,933 - 41,059,478
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027K09.b
ACCDH858337
length805
definitionDH858337|Mus musculus domesticus DNA, BAC clone: B6Ng01-027K09, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttacctctggtcccattattaatggggttatttgatttt
ctggagtccaccttcttgagttctttatatatattggatattagtcccct
atctgaactaggataggtaaagatgcttttccaatctgttggtcaccgtc
ttgtcttattgacagtgtcatttgccttacagaagctttgcaattttatg
cggtactatttgtccattctcaatcttacagcacaagccattgctgttct
gttcaggaattttttcccttgtgcccatatattcaaggcttttccccact
ttctcctctataagtttcactatctctggttttatgtggagttccttaat
ccacttatatttgaccttagtacaaggagataggaatggatcaattcgca
atcttctacatgataacagccagttgtgccagcaccgtttgttgaaaatg
ctgtctctttttccactggatggttttagctcccttgacaaagatcaagt
gaccataggtgtgtgggttcatttagggtttcaattctaatccatttttt
acttgtctgtccttatacaagtaccatgcagttttttatcacaattgctc
tgtagtacagctttttggtcatacatggtgattcaaccagaggttctttt
atcattgagaagagtttttgttctcctaggttttttgttattccagatga
atttgcaaattgccttttctaattcattgaaagaattgagttggaatttg
atggggattgcattgaatctggtagaatgcttttggcaagaaaccttttt
actat
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41058933_41059478
seq2: B6Ng01-027K09.b_309_853 (reverse)

seq1  ATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTA-CAGATTCAATGCAA  49
      || |||||||  | | |||||||||||||| |||| ||||||||||||||
seq2  ATAGTAAAAA--GGTTTCTTGCCAAAAGCATTCTACCAGATTCAATGCAA  48

seq1  TCCCCATCAAAATTCCAACTCAATTC-TTCAACGAATTTGAAAGAGCAAT  98
      |||||||| ||||||||||||||||| ||||| ||||| ||||  |||||
seq2  TCCCCATC-AAATTCCAACTCAATTCTTTCAATGAATTAGAAAAGGCAAT  97

seq1  CTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTC  148
       |||||||||||||||||||||||||||||||||| | ||||||||||||
seq2  TTGCAAATTCATCTGGAATAACAAAAAACCTAGGAGAACAAAAACTCTTC  147

seq1  TCAAGGATAACAGAACCTCTGGTGGAATCACCATGCCTGACC-TAAAGCT  197
      |||| ||||| |||||||||||| |||||||||||  |||||  ||||||
seq2  TCAATGATAAAAGAACCTCTGGTTGAATCACCATGTATGACCAAAAAGCT  197

seq1  TTACTACAGAGCAATTGTGAT-AAAAACTGCATGGTACTGGTATAGTGAC  246
       |||||||||||||||||||| ||||||||||||||||| |||||  |||
seq2  GTACTACAGAGCAATTGTGATAAAAAACTGCATGGTACTTGTATAAGGAC  247

seq1  AGACAAGCAGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCACA  296
      ||||||| | |  |||||| |||||||||| || |  ||| ||| |||||
seq2  AGACAAGTA-AAAAATGGATTAGAATTGAA-AC-CCTAAATGAACCCACA  294

seq1  CACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGA  346
      ||||||||||||||||||||| | ||||||||||||||||||||||||||
seq2  CACCTATGGTCACTTGATCTTTGTCAAGGGAGCTAAAACCATCCAGTGGA  344

seq1  AAAA-AGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATC  395
      |||| ||||||||||||||||||| ||||||||||||||||| |||||||
seq2  AAAAGAGACAGCATTTTCAACAAACGGTGCTGGCACAACTGGCTGTTATC  394

seq1  ATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCA  445
      |||||||||| |||||||||||||| ||||||||||||||||||||||||
seq2  ATGTAGAAGATTGCGAATTGATCCATTCCTATCTCCTTGTACTAAGGTCA  444

seq1  AATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAAACTT  495
      ||| ||||||||| ||||||| ||||||||||||||||| | ||||||||
seq2  AATATAAGTGGATTAAGGAACTCCACATAAAACCAGAGATAGTGAAACTT  494

seq1  ATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAA  545
      |||||||||||||||||||||||||||||| |||||| |||| |||||||
seq2  ATAGAGGAGAAAGTGGGGAAAAGCCTTGAATATATGGGCACAAGGGAAAA  544

seq1  A  546
      |
seq2  A  545