BAC Information

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BAC

Clone NameB6Ng01-027K17
Chromosome3 (Build37)
Map Location 132,624,654 - 132,751,369
singlet/doubletdoublet
Overlap geneGstcd
Upstream geneDkk2, LOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt
Downstream geneInts12, 9130221D24Rik, Ppa2, E130014J05Rik, EG620205, LOC100039168
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027K17.bB6Ng01-027K17.g
ACCDH858352DH858353
length471911
definitionDH858352|Mus musculus domesticus DNA, BAC clone: B6Ng01-027K17, 5' end.DH858353|Mus musculus domesticus DNA, BAC clone: B6Ng01-027K17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,750,894 - 132,751,369)(132,624,654 - 132,625,568)
sequence
accacatagtccaaactggcctcaaacttgtgatcctcctgtgttactag
atttgagccagaaatcattgagggagctgaagaatatgcagtaaatggaa
tcaagaagcgatgacagagaattgtgtccagtgttaaaaactggcagata
actaatgcttgacatggaggtttaggaggggggcatccttactgaaattt
tttgttttgttttgttttttgttttttcgagataaggtttctctgtgtag
ccctggctgtcctggaactcactctctagatcaggcttgcctcgaactca
gaaatccgcctgcctttgcctcccaagtgctgggattaaaggtgtgctcc
actactgcccggcactgaaaatattttaataacataatttctgattattt
ttattttgataagattgttcctactacaataaaatgtgctttaatttagg
ctatattctgaatagtattaa
gaattccctcagagacaagtgctatccacctttcattatgagaccaaaac
tggccccaaaggcaagagagatactgacattgaagatatatgaaaagtgt
ttgcacaaatatctttcttaaatactaacaaaagagaatatttctcaggc
taataaatccatgatttttatatttgtgttgtatagtagagaagccatgc
acctaagtattcttggtttactgtggttacttattgtagatccccaaatt
gtttacatgcatagatagtttggaaaaatcggagaaggagtgcactgggg
acgcattaggaaatcccttgctttgtcctcagatgaggatgttgttttta
acttagcctgttggggtttcatacagtgtaggctgatgtcaggcttcctt
gcatgctatacccggttaagtgtgaccttgaacttttaattcccctgcct
ctacctcccgagtgctggaggtaggaccatgaacctccatgtcaggtgtg
tgcagtatgggaaactgagttcagggactcatggatgctatgtgaacact
ctaccaactgagctaacatcctagagcaggcgatcagttaaaaatatttt
ataacttttgagtgtgtgtgtgcacaggatgtatgtgtgccagtacctag
tccgtggcatgtttgtaaaggccagaggagaactttgtgtgtttggttct
atcttcccaactttccaagtgttctgtgttttgaactcagatcactaggc
ccacatagcatctttactcactaaaccatcttgccaaactcacataactg
gctttgagactctccatctaattcggatatttgcttcagtaaacctgagt
tgggatactgacaggttgcttttacaaagacatccgttacagttttgtca
aggaattggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_132750894_132751369
seq2: B6Ng01-027K17.b_45_521 (reverse)

seq1  TTAATACTA-TCAGAATATAGCCTAAATTAAAGCACATTTTATTGTAGTA  49
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACTATTCAGAATATAGCCTAAATTAAAGCACATTTTATTGTAGTA  50

seq1  GGAACAATCTTATCAAAATAAAAATAATCAGAAATTATGTTATTAAAATA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAATCTTATCAAAATAAAAATAATCAGAAATTATGTTATTAAAATA  100

seq1  TTTTCAGTGCCGGGCAGTAGTGGAGCACACCTTTAATCCCAGCACTTGGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTGCCGGGCAGTAGTGGAGCACACCTTTAATCCCAGCACTTGGG  150

seq1  AGGCAAAGGCAGGCGGATTTCTGAGTTCGAGGCAAGCCTGATCTAGAGAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAGGCAGGCGGATTTCTGAGTTCGAGGCAAGCCTGATCTAGAGAG  200

seq1  TGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCTTATCTCGAAAAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCTTATCTCGAAAAAA  250

seq1  CAAAAAACAAAACAAAACAAAAAATTTCAGTAAGGATGCCCCCCTCCTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAACAAAACAAAACAAAAAATTTCAGTAAGGATGCCCCCCTCCTAA  300

seq1  ACCTCCATGTCAAGCATTAGTTATCTGCCAGTTTTTAACACTGGACACAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCATGTCAAGCATTAGTTATCTGCCAGTTTTTAACACTGGACACAA  350

seq1  TTCTCTGTCATCGCTTCTTGATTCCATTTACTGCATATTCTTCAGCTCCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTCATCGCTTCTTGATTCCATTTACTGCATATTCTTCAGCTCCC  400

seq1  TCAATGATTTCTGGCTCAAATCTAGTAACACAGGAGGATCACAAGTTTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGATTTCTGGCTCAAATCTAGTAACACAGGAGGATCACAAGTTTGA  450

seq1  GGCCAGTTTGGACTATGTGGTGAATTC  476
      |||||||||||||||||||||||||||
seq2  GGCCAGTTTGGACTATGTGGTGAATTC  477

seq1: chr3_132624654_132625568
seq2: B6Ng01-027K17.g_68_977

seq1  GAATTCCCTCAGAGACAAGTGCTATCCACCTTTCATTATGAGACCAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCAGAGACAAGTGCTATCCACCTTTCATTATGAGACCAAAAC  50

seq1  TGGCCCCAAAGGCAAGAGAGATACTGACATTGAAGATATATGAAAAGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCCAAAGGCAAGAGAGATACTGACATTGAAGATATATGAAAAGTGT  100

seq1  TTGCACAAATATCTTTCTTAAATACTAACAAAAGAGAATATTTCTCAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAAATATCTTTCTTAAATACTAACAAAAGAGAATATTTCTCAGGC  150

seq1  TAATAAATCCATGATTTTTATATTTGTGTTGTATAGTAGAGAAGCCATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATCCATGATTTTTATATTTGTGTTGTATAGTAGAGAAGCCATGC  200

seq1  ACCTAAGTATTCTTGGTTTACTGTGGTTACTTATTGTAGATCCCCAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGTATTCTTGGTTTACTGTGGTTACTTATTGTAGATCCCCAAATT  250

seq1  GTTTACATGCATAGATAGTTTGGAAAAATCGGAGAAGGAGTGCACTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACATGCATAGATAGTTTGGAAAAATCGGAGAAGGAGTGCACTGGGG  300

seq1  ACGCATTAGGAAATCCCTTGCTTTGTCCTCAGATGAGGATGTTGTTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCATTAGGAAATCCCTTGCTTTGTCCTCAGATGAGGATGTTGTTTTTA  350

seq1  ACTTAGCCTGTTGGGGTTTCATACAGTGTAGGCTGATGTCAGGCTTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCCTGTTGGGGTTTCATACAGTGTAGGCTGATGTCAGGCTTCCTT  400

seq1  GCATGCTATACCCGGTTAAGTGTGACCTTGAACTTTTAATTCCCCTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTATACCCGGTTAAGTGTGACCTTGAACTTTTAATTCCCCTGCCT  450

seq1  CTACCTCCCGAGTGCTGGAGGTAGGACCATGAACCTCCATGTCAGGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCCCGAGTGCTGGAGGTAGGACCATGAACCTCCATGTCAGGTGTG  500

seq1  TGCAGTATGGGAAACTGAGTTCAGGGACTCATGGATGCTATGTGAACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTATGGGAAACTGAGTTCAGGGACTCATGGATGCTATGTGAACACT  550

seq1  CTACCAACTGAGCTAACATCCTAGAGCAGGCGATCAGTTAAAAATATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAACTGAGCTAACATCCTAGAGCAGGCGATCAGTTAAAAATATTTT  600

seq1  ATAACTTTTGAGTGTGTGTGTGCACAGGATGTATGTGTGCCAGTACCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTTTGAGTGTGTGTGTGCACAGGATGTATGTGTGCCAGTACCTAG  650

seq1  TCCGTGGCATGTTTGTAAAGGCCAGAGGAGAACTTTGTGTGTTTGGTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGGCATGTTTGTAAAGGCCAGAGGAGAACTTTGTGTGTTTGGTTCT  700

seq1  ATCTTCCCAACTTTCCAAGTGTTCTGTGTTTTGAACTCAGATCACTAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCCAACTTTCCAAGTGTTCTGTGTTTTGAACTCAGATCACTAGGC  750

seq1  CCACATAGCATCTTTACCCACTAAACCATCTTGCCAAACTCACATAACTG  800
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCACATAGCATCTTTACTCACTAAACCATCTTGCCAAACTCACATAACTG  800

seq1  GCTTTTGAGACTCTCCATCTAATTCGGATATTTGCTTCAGTAAACCTGAG  850
      || |||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GC-TTTGAGACTCTCCATCTAATTCGGATATTTGCTTCAGTAAACCTGA-  848

seq1  GTTGGGAATACTGACAAGGTGGCTTTAACAAAGACATCCGTTACAGTATG  900
      |||||| |||||||| |||| ||||| |||||||||||||||||||| | 
seq2  GTTGGG-ATACTGAC-AGGTTGCTTTTACAAAGACATCCGTTACAGT-TT  895

seq1  TGCAAAGGAATTGGA  915
      ||  |||||||||||
seq2  TGTCAAGGAATTGGA  910