BAC Information

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BAC

Clone NameB6Ng01-027L08
Chromosome7 (Build37)3 (Build37)
Map Location 5,848,790 - 5,849,97979,442,408 - 79,442,951
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11
Downstream geneLOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027L08.bB6Ng01-027L08.g
ACCDH858382DH858383
length1,1621,032
definitionDH858382|Mus musculus domesticus DNA, BAC clone: B6Ng01-027L08, 5' end.DH858383|Mus musculus domesticus DNA, BAC clone: B6Ng01-027L08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,848,790 - 5,849,979)(79,442,408 - 79,442,951)
sequence
gaattctttataaaatgaagtaaattttttgttagaataggatggcctgt
tatctgtcttaataagtttaggcaatcccatggcattaaaggcttgtagg
caatgatcaattacatttttggaggcttctccagcaggcagagaagcaaa
aagaaatcctgaacaagtgccaatacaaacatgtatatattttaattttc
caaattctgcataatgagttatatccatttgccaaatatgattaggcata
agaccttgtggattaactcctaaatgtggcactggaaattatgtaataca
tttaggacatgtgggcctagccattgtctacagacaggaggctcaactgt
caccaaaggatagcaagagttggtggtcgacagagcccatgagctcttgg
cacagtggaaggagacatctgagaaactaaagacagctcatggtgccctt
catgtcaggtcagtcatggagggtgacctgggttgctgaagccaggtcca
gatgaatagtgaattctcaagcacagacaagcctctggccaggtacagta
tggttgaatgtgcttaagtaaataaaatataaaataaaataaaataaaat
aaaataaagaggtgtagataaccatagaagcaatagtttaaaaatcaata
aagtgaagtctatgtgggaaggagagacttataaagaaaaatatgctttg
tgttaaaaagcagaaaaggcatggggattccatatacatttttcacttat
cagtatacaaataattgtgttttctataatgattacaattttatatatgc
ttcttaagagagatcagaagaaaacagacttagataaagaaagaactaga
gggctggagagatggctcagctgttaggagcactgactgctcttccatat
gtctcgaattcaaatcccagaaacacatggtggcgcacagccatccataa
tgagatctgatgccctcttctggagtgtctgagacagctacagtgtacta
atataataataataaattatctttttaaatataataaggactagaaaatt
cttgctaggtacaaaaaagacaaatttggaaattcctttgatttataaat
ttccgagatttatgcaagcttaacaatacctatggcagtctgcaaagcac
tgtgtccaaaaa
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgccttattgacgatgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
gttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaggagataagtatggatcaattggca
ttcttctacacaataacaaccatttgtgccagcaccaattgttgaaaatg
ctgtctttcttccactggatggttttagctcccttgtcaaagatcaagtg
accataggtgtgtgggttcatttctgggtcttcaattctattccattggt
ctacttgtctgtctctataccagtaccatgcagtttttatcacaattgct
cagtattaaagctttaggtcaggcatggtgattccaccaaaggttctttt
atccttgagaagagtttttgctatcctaggttttttgttattccagatga
atttgcaaattgctccttctaattcgttgaagaattgagttggaattttg
atggggattgcattgaatctgtagattacttttggcaagatagccatttt
tacaatgttgatcctgccaatccatgagcatgggagatctttccatctct
gagatcttctttaatttctttctcagagatttgaagttttatcatacaga
tctttcactccctagtagagtcacgccagattttgtatatatttgtgact
attgcggaagatgttgtttccctatttcttcctcagcctattattctttg
ttagagaagcccattagcttgtttgagttaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_5848790_5849979
seq2: B6Ng01-027L08.b_42_1203 (reverse)

seq1  TTTTTGGACACAGACTGCCTTTTTGCAGACTTGCCACTAGGTTATTGTCT  50
      |||||||||||||  |||   ||||||||| ||||| |||| |||||| |
seq2  TTTTTGGACACAG--TGC---TTTGCAGAC-TGCCA-TAGG-TATTGT-T  41

seq1  AGGCTTTGCATTTAATTCCTCTGAAATTTTATGAATCAAAGGATTTTCCA  100
      | || |||||  ||| | ||| |||| ||||| |||||||||| ||||||
seq2  AAGC-TTGCA--TAAAT-CTCGGAAA-TTTATAAATCAAAGGAATTTCCA  86

seq1  AATTTTGTTCTCTTTTTTGTACCTTAGCAAGGATTTTTCTAGTTCTTTAT  150
      |||    || ||||||||||||| |||||| || ||||||||| |||   
seq2  AAT----TTGTCTTTTTTGTACC-TAGCAA-GAATTTTCTAGTCCTT--A  128

seq1  TTATATTTAAAAAGATATATTTATTTATTATTATATGTAAGTACACTGTA  200
      ||||||||||||||||| ||||| |||||||||||  | |||||||||||
seq2  TTATATTTAAAAAGATA-ATTTA-TTATTATTATA--TTAGTACACTGTA  174

seq1  GCTGTCTTCAGACACTCCAGAAGAGGGCATCAGATCTCATTATGGATGGC  250
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTC-TCAGACACTCCAGAAGAGGGCATCAGATCTCATTATGGATGGC  223

seq1  TGTGCGCCACCATGTGGTTTCTGGGATTTGAATTCGAGACATATGGAAGA  300
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGTGCGCCACCATGT-GTTTCTGGGATTTGAATTCGAGACATATGGAAGA  272

seq1  GCAGTCAGTGCTCCTAACAGCTGAGCCATCTCTCCAGCCCTCTAGTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCAGTGCTCCTAACAGCTGAGCCATCTCTCCAGCCCTCTAGTTCTT  322

seq1  TCTTTATCTAAGTCTGTTTTCTTCTGATCTCTCTTAAGAAGCATATATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATCTAAGTCTGTTTTCTTCTGATCTCTCTTAAGAAGCATATATAA  372

seq1  AATTGTAATCATTATAGAAAACACAATTATTTGTATACTGATAAGTGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTAATCATTATAGAAAACACAATTATTTGTATACTGATAAGTGAAA  422

seq1  AATGTATATGGAATCCCCATGCCTTTTCTGCTTTTTAACACAAAGCATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATATGGAATCCCCATGCCTTTTCTGCTTTTTAACACAAAGCATAT  472

seq1  TTTTCTTTATAAGTCTCTCCTTCCCACATAGACTTCACTTTATTGATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTATAAGTCTCTCCTTCCCACATAGACTTCACTTTATTGATTTT  522

seq1  TAAACTATTGCTTCTATGGTTATCTACACCTCTTTATTTTATTTTATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTATTGCTTCTATGGTTATCTACACCTCTTTATTTTATTTTATTTT  572

seq1  ATTTTATTTTATATTTTATTTACTTAAGCACATTCAACCATACTGTACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTTATATTTTATTTACTTAAGCACATTCAACCATACTGTACCT  622

seq1  GGCCAGAGGCTTGTCTGTGCTTGAGAATTCACTATTCATCTGGACCTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAGGCTTGTCTGTGCTTGAGAATTCACTATTCATCTGGACCTGGC  672

seq1  TTCAGCAACCCAGGTCACCCTCCATGACTGACCTGACATGAAGGGCACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAACCCAGGTCACCCTCCATGACTGACCTGACATGAAGGGCACCA  722

seq1  TGAGCTGTCTTTAGTTTCTCAGATGTCTCCTTCCACTGTGCCAAGAGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGTCTTTAGTTTCTCAGATGTCTCCTTCCACTGTGCCAAGAGCTC  772

seq1  ATGGGCTCTGTCGACCACCAACTCTTGCTATCCTTTGGTGACAGTTGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTCTGTCGACCACCAACTCTTGCTATCCTTTGGTGACAGTTGAGC  822

seq1  CTCCTGTCTGTAGACAATGGCTAGGCCCACATGTCCTAAATGTATTACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTCTGTAGACAATGGCTAGGCCCACATGTCCTAAATGTATTACAT  872

seq1  AATTTCCAGTGCCACATTTAGGAGTTAATCCACAAGGTCTTATGCCTAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCAGTGCCACATTTAGGAGTTAATCCACAAGGTCTTATGCCTAAT  922

seq1  CATATTTGGCAAATGGATATAACTCATTATGCAGAATTTGGAAAATTAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTGGCAAATGGATATAACTCATTATGCAGAATTTGGAAAATTAAA  972

seq1  ATATATACATGTTTGTATTGGCACTTGTTCAGGATTTCTTTTTGCTTCTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATACATGTTTGTATTGGCACTTGTTCAGGATTTCTTTTTGCTTCTC  1022

seq1  TGCCTGCTGGAGAAGCCTCCAAAAATGTAATTGATCATTGCCTACAAGCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCTGGAGAAGCCTCCAAAAATGTAATTGATCATTGCCTACAAGCC  1072

seq1  TTTAATGCCATGGGATTGCCTAAACTTATTAAGACAGATAACAGGCCATC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGCCATGGGATTGCCTAAACTTATTAAGACAGATAACAGGCCATC  1122

seq1  CTATTCTAGCAAAAAATTTACTTCATTTTATAAAGAATTC  1190
      |||||||| |||||||||||||||||||||||||||||||
seq2  CTATTCTAACAAAAAATTTACTTCATTTTATAAAGAATTC  1162

seq1: chr3_79442408_79442951
seq2: B6Ng01-027L08.g_567_1099 (reverse)

seq1  ATTAACTCAAACAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGC  50
      |||||||||||||||  ||||| | ||||||| ||||||||| || ||||
seq2  ATTAACTCAAACAAGCTAATGGGC-TTCTCTA-ACAAAGAAT-AATAGGC  47

seq1  TGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGCCACAAATAATA  100
      |||| |||||| ||||||||||||| | | | |||||| ||||||| |||
seq2  TGAGGAAGAAA-TAGGGAAACAACATCTTCCGCAATAGTCACAAAT-ATA  95

seq1  TAAAATATCTCGGCGTGACTCTAACGAAGGAAGTGAAAGATCTGTATGAT  150
      || || |||| ||||||||||||    ||| |||||||||||||||||||
seq2  TACAAAATCT-GGCGTGACTCTA--CTAGGGAGTGAAAGATCTGTATGAT  142

seq1  AAAAACTTCAAGTCCCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATG  200
       |||||||||| || ||| ||||||||||||||||||||||||| |||||
seq2  -AAAACTTCAAATCTCTG-AGAAAGAAATTAAAGAAGATCTCAG-AGATG  189

seq1  GAAAGATCTCCCATGCTCATGGATTGGCAGGACCAACATTGTAAAAATGG  250
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGG  239

seq1  CTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATTAAAATT  300
      ||||||||||||||| ||||||||||||||||||||||||||| ||||||
seq2  CTATCTTGCCAAAAGTAATCTACAGATTCAATGCAATCCCCATCAAAATT  289

seq1  CCAACTCAATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCAATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTG  339

seq1  GAATAACAAAAAACCGAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAA  400
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAA  389

seq1  CCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATT  450
      ||| ||||||||||||||||||||||||||||||||| ||| ||||||||
seq2  CCTTTGGTGGAATCACCATGCCTGACCTAAAGCTTTAATACTGAGCAATT  439

seq1  GTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTGGACCAATG  500
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTAGACCAATG  489

seq1  GAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTC  544
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTC  533