BAC Information

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BAC

Clone NameB6Ng01-027M03
Chromosome3 (Build37)1 (Build37)
Map Location 41,058,850 - 41,059,38651,744,069 - 51,744,478
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027M03.bB6Ng01-027M03.g
ACCDH858418DH858419
length886404
definitionDH858418|Mus musculus domesticus DNA, BAC clone: B6Ng01-027M03, 5' end.DH858419|Mus musculus domesticus DNA, BAC clone: B6Ng01-027M03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,058,850 - 41,059,386)(51,744,069 - 51,744,478)
sequence
gaattctttgttcagttctgagccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatagatattggatattagtcccc
tatctgattttggataggtaaagatcctttcccaatctgttggtggtctt
tttgtcttattgacggtgtcttttgccttgcagaagctttgcaatgttat
gaagtcccatttatcgattctcaatcttactgcacaagccattgctgttc
tattcaggaatttttcccctgtacccaattcttcgaggcttttccctact
ttctcctctataagtttcagtgtctctggttttatgtggagttccttaat
ccacttagatttgaccttagtacaaggagatagaaatggatcaattctca
atcttctacatgataacagccagttgtgccagcaccaattgttgaaaatg
ctgtcttttttccactggatggttttagctcccttgtcaaagatcaagtg
accataggtatgtgggttcatctctgggtcttcaattctgttcccttggt
ctacttgtctgtcactataccagtaccatgcagtttttatcacaattgct
ctgtagtacagctttaggtcaggcatggtgattccaccagagggtctttt
atccttgagaagagtttttgctatcctaggtttttgttattccagatgaa
tctgcagattgccctttctaattcgttgaaaaattgagttggaattttga
tggggattgcgttgaatctgttaatttgcttttggcaagatagccatttt
tactatattgatcctgctattcatgagcatgggagatctttcgatctctg
agatcttctttattttctttctcagagacttgaagt
tacatttggatctacaggcagcgggaagagagagtgagccactggacttg
atttgagcttcagaaatttcaaaacccaccccaagtgacatacttcctct
aataagaccacactacttaaacctttcaaataatagtactccccatgagc
ctatgggggttattttacagccctctaaataactgagctgggctatagga
ctttcaacatccttgctgtctgactgacctgcagacctgatcactgactt
tctttgtctatttggacagtttctatttccagaccctttggggacctaaa
agtggtaaaaatcaatggaaaagggaccatgattagctgaactttcaagg
tgtgctcacgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41058850_41059386
seq2: B6Ng01-027M03.b_395_928 (reverse)

seq1  ACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAA  50
      |||||||||||||| ||||||||| ||||||||||||||| |||| ||||
seq2  ACTTCAAGTCTCTG-AGAAAGAAAATAAAGAAGATCTCAG-AGATCGAAA  48

seq1  GATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTAT  100
      |||||||||||||||| || | |||||||||| || ||||||||||||||
seq2  GATCTCCCATGCTCAT-GAATAGCAGGATCAATATAGTAAAAATGGCTAT  97

seq1  CTTGCCAAAAGC-AATCTACAGATTCAATGCAATCCCCATCAAAATTCCA  149
      |||||||||||| |||  |||||||||| |||||||||||||||||||||
seq2  CTTGCCAAAAGCAAATTAACAGATTCAACGCAATCCCCATCAAAATTCCA  147

seq1  ACTCAATTCTTCAACGAATTTGAAAGAGCAATCTGCAAATTCATCTGGAA  199
      |||||||| ||||||||||| ||||| |||||||||| ||||||||||||
seq2  ACTCAATTTTTCAACGAATTAGAAAGGGCAATCTGCAGATTCATCTGGAA  197

seq1  TAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAACAGAACCT  249
      |||| ||||||||||||||||||||||||||||||||||||| ||| |||
seq2  TAAC-AAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAAAAGACCCT  246

seq1  CTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTG  299
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGGTGGAATCACCATGCCTGACCTAAAGCTGTACTACAGAGCAATTGTG  296

seq1  ATAAAAACTGCATGGTACTGGTATAGTGACAGACAAGCAGACCAATGGAA  349
      ||||||||||||||||||||||||||||||||||||| ||||||| ||||
seq2  ATAAAAACTGCATGGTACTGGTATAGTGACAGACAAGTAGACCAAGGGAA  346

seq1  TAGAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCACTTGATCT  399
       |||||||||||| |||| | ||| ||||| |||||||||||||||||||
seq2  CAGAATTGAAGACCCAGAGATGAACCCACATACCTATGGTCACTTGATCT  396

seq1  TCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAAC  449
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAAC  446

seq1  AAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATTGA  499
      || |||||||||||||||||| ||||||||||||||||| || |||||||
seq2  AATTGGTGCTGGCACAACTGGCTGTTATCATGTAGAAGATTGAGAATTGA  496

seq1  TCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGT  537
      |||| | |||||||||||||||||||||||||||||||
seq2  TCCATTTCTATCTCCTTGTACTAAGGTCAAATCTAAGT  534

seq1: chr1_51744069_51744478
seq2: B6Ng01-027M03.g_70_479 (reverse)

seq1  CACACACACACACACACACACACACACACACACGCACACACACACGTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACGCACACACACACGTGAG  50

seq1  CACACCTTGAAAGTTCAGCTAATCATGGTCCCTTTTCCATTGATTTTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTTGAAAGTTCAGCTAATCATGGTCCCTTTTCCATTGATTTTTAC  100

seq1  CACTTTTAGGTCCCCAAAGGGTCTGGAAATAGAAACTGTCCAAATAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTAGGTCCCCAAAGGGTCTGGAAATAGAAACTGTCCAAATAGACA  150

seq1  AAGAAAGTCAGTGATCAGGTCTGCAGGTCAGTCAGACAGCAAGGATGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTCAGTGATCAGGTCTGCAGGTCAGTCAGACAGCAAGGATGTTG  200

seq1  AAAGTCCTATAGCCCAGCTCAGTTATTTAGAGGGCTGTAAAATAACCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCTATAGCCCAGCTCAGTTATTTAGAGGGCTGTAAAATAACCCCC  250

seq1  ATAGGCTCATGGGGAGTACTATTATTTGAAAGGTTTAAGTAGTGTGGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTCATGGGGAGTACTATTATTTGAAAGGTTTAAGTAGTGTGGTCT  300

seq1  TATTAGAGGAAGTATGTCACTTGGGGTGGGTTTTGAAATTTCTGAAGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGAGGAAGTATGTCACTTGGGGTGGGTTTTGAAATTTCTGAAGCTC  350

seq1  AAATCAAGTCCAGTGGCTCACTCTCTCTTCCCGCTGCCTGTAGATCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAGTCCAGTGGCTCACTCTCTCTTCCCGCTGCCTGTAGATCCAAA  400

seq1  TGTAGAATTC  410
      ||||||||||
seq2  TGTAGAATTC  410