BAC Information

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BAC

Clone NameB6Ng01-027N20
Chromosome2 (Build37)3 (Build37)
Map Location 92,394,243 - 92,394,96590,404,994 - 90,405,811
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCkap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1, Phf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2, Slc35c1, LOC100042775
Downstream geneLOC100043205, Chst1, Syt13, LOC100042784, Trp53i11, C230071H18Rik, Tspan18, LOC100042789, LOC639658, Cd82
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027N20.bB6Ng01-027N20.g
ACCDH858496DH858497
length966813
definitionDH858496|Mus musculus domesticus DNA, BAC clone: B6Ng01-027N20, 5' end.DH858497|Mus musculus domesticus DNA, BAC clone: B6Ng01-027N20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(92,394,243 - 92,394,965)(90,404,994 - 90,405,811)
sequence
gaattcttgacctaggagtagggaggacgttgagacagttctgtggatag
tctgggaatgagtgactatgatttatagattttagatgaattgaaaagga
agaagaaaaaaaataagaaaatgaagaagaagaagaagaagaagaagaag
aagaagaagaatattaagagtaacaagaaaataaggaggaggaggaggaa
gatagagtctgatagattggtttataaatagataacccgatcgatttgta
tttgcatttttaaaggatggctctgctggttgtgtagggaaagcacaaag
ctgttgagagatacatctaagctccctgtgatggtgtgaccttgtctgag
gatttgacagcagagctaatgaagaggagatgggtggagaatgtattcag
aggcaacactagcaaggctggaaggtgaattcaatgtgggggtgtaaaga
aaggcaaaccaggagggacccaaatcaaggactgttcaggttcagacact
aggaacaaatggtggtccagttaccaagtggggaagagtgaagtggaaac
aacttaaagaggaggcagaaagaacgccccaagggcagtgttttacagca
gagagcctgtgaaaatgcctgtcatagacaggaaatccagtgctcaacct
agacctcacagagacctgaggttagagacaccaaactgaactgaatggga
gaagatccttaacacatgctctaaactcatgtgtctgagtaagagagggt
ggagatgcaaagtaaaagccctaggacccagcctgtcctgcagaggtcac
cgagacatgacgaatgggatatatagtcgcagcacccaaccctgcatctc
ctcagcttcatgaacatcttgttctactcaacaacactgataggctcagg
gctgctcagggtcatgggacaccgcagcacagcctgatccttctaagctg
tacagcttagggacct
gaattctaggaagtgtttcccttccatctcagtgggggactcttctctaa
gccttctgaggtcccccgggggatgggaggatagctaaaggatggagtat
gtcatatatgagtagatctatgtttgaactggtggactctgcagacgcca
cctggtccatgtttctgactaggcctgtgaggctagattatcccactttg
cagataagacaactgagacccagagagaaacagttcgctcagggcttcag
agtgcacaatagaatgagggtcctcaattgcagtttctttgagttcaggg
taggaggcatagtgaggtggaggggtcctgtcaggcctcaccactgcctc
tggcattagcctcaccaggatctggacaaagaagccctgggcagggcttc
ctgtgcaagctcttacaggatgacgctccaggtctccaaaaggcagaggc
tttctaggatcaagggcagcatcacatggaatggtgcccaataaaagact
gagaattcccaggtgttgtgatgggaaacgatgggagggagtcagagtca
gagggaggctcccagttggggtgaaggtggtagatattctgctcctgagg
aatttatggtgatgtcagggaactgaaacttctgtctagaaaaatcacaa
caggcacagcggggaggtgaattgatccttgcgagtcatacccttgtttt
gtgacagtgagatgacccggcccctgagcaggcataactgccatcgtgtg
caccttccaggattatgcaggcgctgtggggataaatacaagatctgcca
ttggagcttcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_92394243_92394965
seq2: B6Ng01-027N20.b_290_1006 (reverse)

seq1  AGTTCCCTTAGCTGTACATGCTTAG-AGGGTCAGGGCTGTGCTGCGGGTG  49
      || ||||| ||||||||| |||||| ||| ||| ||||||||||| ||||
seq2  AGGTCCCTAAGCTGTACA-GCTTAGAAGGATCA-GGCTGTGCTGC-GGTG  47

seq1  TCACAATGACCCTGAGACAGCCCTGAGCCT-TCAGTTGTTGTTGTGTAGA  98
      || | ||||||||||| ||||||||||||| |||| |||||||| |||||
seq2  TC-CCATGACCCTGAG-CAGCCCTGAGCCTATCAG-TGTTGTTGAGTAGA  94

seq1  ACAGGATGTTCATGAAGCTGAGGAGATGGCAGGGCTGGGTGCTGCGTACT  148
      ||| ||||||||||||||||||||||| |||||| ||||||||||| |||
seq2  ACAAGATGTTCATGAAGCTGAGGAGAT-GCAGGGTTGGGTGCTGCG-ACT  142

seq1  ATATATCCCATTCGTCATGTCTCGGTGACCTCTGCAGGACAGGCTGGGTC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCCCATTCGTCATGTCTCGGTGACCTCTGCAGGACAGGCTGGGTC  192

seq1  CTAGGGCTTTTTACTTTGCATCTCCACCCTCTCTTACTCAGACACATGAG  248
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGC-TTTTACTTTGCATCTCCACCCTCTCTTACTCAGACACATGAG  241

seq1  TTTAGAGCATGTGTTAAGGATCTTCTCCCATTCAGTTCAGTTTGGTGTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGCATGTGTTAAGGATCTTCTCCCATTCAGTTCAGTTTGGTGTCT  291

seq1  CTAACCTCAGGTCTCTGTGAGGTCTAGGTTGAGCACTGGATTTCCTGTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTCAGGTCTCTGTGAGGTCTAGGTTGAGCACTGGATTTCCTGTCT  341

seq1  ATGACAGGCA-TTTCACAGGCTCTCTGCTGTAAAACACTGCCCTTGGGGC  397
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGGCATTTTCACAGGCTCTCTGCTGTAAAACACTGCCCTTGGGGC  391

seq1  GTTCTTTCTGCCTCCTCTTTAAGTTGTTTCCACTTCACTCTTCCCCACTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTCTGCCTCCTCTTTAAGTTGTTTCCACTTCACTCTTCCCCACTT  441

seq1  GGTAACTGGACCACCATTTGTTCCTAGTGTCTGAACCTGAACAGTCCTTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACTGGACCACCATTTGTTCCTAGTGTCTGAACCTGAACAGTCCTTG  491

seq1  ATTTGGGTCCCTCCTGGTTTGCCTTTCTTTACACCCCCACATTGAATTCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGTCCCTCCTGGTTTGCCTTTCTTTACACCCCCACATTGAATTCA  541

seq1  CCTTCCAGCCTTGCTAGTGTTGCCTCTGAATACATTCTCCACCCATCTCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAGCCTTGCTAGTGTTGCCTCTGAATACATTCTCCACCCATCTCC  591

seq1  TCTTCATTAGCTCTGCTGTCAAATCCTCAGACAAGGTCACACCATCACAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATTAGCTCTGCTGTCAAATCCTCAGACAAGGTCACACCATCACAG  641

seq1  GGAGCTTAGATGTATCTCTCAACAGCTTTGTGCTTTCCCTACACAACCAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTAGATGTATCTCTCAACAGCTTTGTGCTTTCCCTACACAACCAG  691

seq1  CAGAGCCATCCTTTAAAAATGCAAAT  723
      ||||||||||||||||||||||||||
seq2  CAGAGCCATCCTTTAAAAATGCAAAT  717

seq1: chr3_90404994_90405811
seq2: B6Ng01-027N20.g_67_879

seq1  GAATTCTAGGAAGTGTTTCCCTTCCATCTCAGTGGGGGACTCTTCTCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAATTCTAGGAAGTGTTTCCCTTCCATCTCAGTGGGGGACTCTTCTCTAA  50

seq1  GCCTTCTGAGGTCCCCCGGGGGATGGGAGGATAGCTAAAGGATGGAGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCCTTCTGAGGTCCCCCGGGGGATGGGAGGATAGCTAAAGGATGGAGTAT  100

seq1  GTCATAGATGAGTAGATCTATGTATGAACTGGTGGACTCTGCAGACGCCA  150
      |||||| |||||||||||||||| ||||||||||||||||||||||||||
seq2  GTCATATATGAGTAGATCTATGTTTGAACTGGTGGACTCTGCAGACGCCA  150

seq1  CCTGGTCCATGTTTCTGACTAGGCCTGTGAGGCTAGATTATCCCACTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCCATGTTTCTGACTAGGCCTGTGAGGCTAGATTATCCCACTTTG  200

seq1  CAGATAAGACAACTGAGACCCAGAGAGAAACAGTTCGCTCAGGGCTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAGACAACTGAGACCCAGAGAGAAACAGTTCGCTCAGGGCTTCAG  250

seq1  AGTGCACAATAGAATGAGGGTCCTCAATTGCAGTTTCTTTGAGTTCAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCACAATAGAATGAGGGTCCTCAATTGCAGTTTCTTTGAGTTCAGGG  300

seq1  TAGGAGGCATAGTGAGGTGGAGGGGTCCTGTCAGGCCTCACCACTGCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGGCATAGTGAGGTGGAGGGGTCCTGTCAGGCCTCACCACTGCCTC  350

seq1  TGGCATTAGCCTCACCAGGATCTGGACAAAGAAGCCCTGGGCAGGGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTAGCCTCACCAGGATCTGGACAAAGAAGCCCTGGGCAGGGCTTC  400

seq1  CTGTGCAAGCTCTTACAGGATGACGCTCCAGGTCTCCAAAAGGCAGAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAAGCTCTTACAGGATGACGCTCCAGGTCTCCAAAAGGCAGAGGC  450

seq1  TTTCTAGGATCAAGGGCAGCATCACATGGAATGGTGCCCAATAAAAGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGGATCAAGGGCAGCATCACATGGAATGGTGCCCAATAAAAGACT  500

seq1  GAGAATTCCCAGGTGTTGTGATGGGAAACGATGGGAGGGAGTCAGAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTCCCAGGTGTTGTGATGGGAAACGATGGGAGGGAGTCAGAGTCA  550

seq1  GAGGGAGGCTCCCAGTTGGGGTGAAGGTGGTAGATATTCTGCTCCTGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGGCTCCCAGTTGGGGTGAAGGTGGTAGATATTCTGCTCCTGAGG  600

seq1  AATTTATGGTGATGTCAGGGAACTGAAACTTCTGTCTAGAAAAATCACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATGGTGATGTCAGGGAACTGAAACTTCTGTCTAGAAAAATCACAA  650

seq1  CAGGCACAGCGGGGAGGTGAATTGATTCCTTGCGAGTCATACCCTTGTTT  700
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAGGCACAGCGGGGAGGTGAATTGA-TCCTTGCGAGTCATACCCTTGTTT  699

seq1  TGTGACAGTGAGGATGACCCGGCCCCTGGAGCAGGCAGTAGCTGCCATCG  750
      ||||||||||| ||||||||||||||| ||||||||| || |||||||||
seq2  TGTGACAGTGA-GATGACCCGGCCCCT-GAGCAGGCA-TAACTGCCATCG  746

seq1  TGTGCACCTTCCAGGAGTATGCAGGGCGCTGTGGGGATAAATACAAGATC  800
      |||||||||||||||| |||||| ||||||||||||||||||||||||||
seq2  TGTGCACCTTCCAGGATTATGCA-GGCGCTGTGGGGATAAATACAAGATC  795

seq1  TGCCAGTCGGAGC-TCAAG  818
      ||||| | ||||| |||||
seq2  TGCCA-TTGGAGCTTCAAG  813