BAC Information

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BAC

Clone NameB6Ng01-028A03
Chromosome3 (Build37)
Map Location 41,059,406 - 41,059,737
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028A03.bB6Ng01-028A03.g
ACCDH858600DH858601
length961102
definitionDH858600|Mus musculus domesticus DNA, BAC clone: B6Ng01-028A03, 5' end.DH858601|Mus musculus domesticus DNA, BAC clone: B6Ng01-028A03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttagctctgagccccatttttaatggggttatctgattt
tctggagtccaccttcttcagttctctctatatatatattagatattagt
cccctatctgatttagcatatgtaaagatcctttcccagtctgttggtgg
cctttttgtctcattgacagtgtccttttccttacagaagctttgcaatt
ttacaaggtcccatttgtcaatgctctatcttacaatacaagccattgct
gttctattcagggatttttcccctgtgcccatatcttcgaggcttttccc
tactttctcctctataagtttcactgtctctgttttttttttaattaggt
attttcctcatttacattttcaatgctatcccaaaggtcccccataccca
cccccccaatcccctacccacccactccccctttttggccctggcgttcc
cctgtactggggcatataaagtttgcaagtccaatgggcctctctttgca
gtgatggccgactagaccatcttttgatacatatgcagctaaagacaaga
gctcccgggtactggttagttcatattgttgttccacctatagggttgca
gttccctatagctccttgggtaatttctctagctcctccattaggggccg
tgtgacccatccaatagctgactgtgatcatccacttctgtgtttgctag
gccccggcatagtctcacaagagagagctataactgggtcctttcagcga
aatcttgctagtgtatgcaatggtgtcagcatttggaagctgattatggg
atggatccctgcatatggcagtcactagatggccaatcctttcgtcacag
ctccaaattttgtctctgtaactccttctatgggtgttttgttctcattt
ctagaaaggataaagtgtccacactttggtcttcgttcttgatttcatgc
gtttggcaagt
tgtttccttaacagggcttcctagtctggcctcagtggagaggatacacc
tagtcctgtagtgacttgaggtgcctgatgggtgaggagggatggggtgg
ta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059406_41059737
seq2: B6Ng01-028A03.b_45_380 (reverse)

seq1  AAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTG  50
      |||| |||||||| |||||||||||||||||||||| ||||||||||| |
seq2  AAAAACAGAGACAGTGAAACTTATAGAGGAGAAAGTAGGGAAAAGCCTCG  50

seq1  AAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGCAATGGCTTGT  100
      ||||||||| |||||||||||||| |||| ||||||||||||||||||||
seq2  AAGATATGGGCACAGGGGAAAAATCCCTGAATAGAACAGCAATGGCTTGT  100

seq1  GCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAACTGCAAAGCTT  150
        |||||||| ||| || ||||||||||||||  | ||| ||||||||||
seq2  ATTGTAAGATAGAGCATTGACAAATGGGACCTTGTAAAATTGCAAAGCTT  150

seq1  CTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-CACCAACAGATT  199
      ||| |||| ||| ||||| |||||| ||||||||||| |||||||||| |
seq2  CTGTAAGGAAAAGGACACTGTCAATGAGACAAAAAGGCCACCAACAGACT  200

seq1  GGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAAT  249
      |||||||||||||||| ||| ||||||||||||||||||||||||| |||
seq2  GGGAAAGGATCTTTACATATGCTAAATCAGATAGGGGACTAATATCTAAT  250

seq1  ATATAT----CAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAATAACC  295
      ||||||      |||||| ||||||||||| |||||||||||| ||||||
seq2  ATATATATAGAGAGAACTGAAGAAGGTGGACTCCAGAAAATCAGATAACC  300

seq1  CCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  332
      ||||| |||||||||||||||||||||||||||||||
seq2  CCATT-AAAAATGGGGCTCAGAGCTAAACAAAGAATT  336