BAC Information

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BAC

Clone NameB6Ng01-028B05
Chromosome3 (Build37)
Map Location 133,981,016 - 134,096,812
singlet/doubletdoublet
Overlap genePpia-ps3_1390.1
Upstream genePpa2, E130014J05Rik, EG620205, LOC100039168, LOC668862, LOC100039199, Cxxc4
Downstream geneLOC100039234, Tacr3, LOC229837, LOC100039290, EG620439, Cenpe, Bdh2, C80638, 4933425K02Rik, Zcd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028B05.bB6Ng01-028B05.g
ACCDH858652DH858653
length1,1891,076
definitionDH858652|Mus musculus domesticus DNA, BAC clone: B6Ng01-028B05, 5' end.DH858653|Mus musculus domesticus DNA, BAC clone: B6Ng01-028B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,095,602 - 134,096,812)(133,981,016 - 133,982,115)
sequence
gaattctgtattgcacactggaggccaaatcacccaatggaattgatcac
actgacagttatacatggccagcattactgtctatattaaacctttacca
ctctgaacataagttccataaccactaaataccattaaacttttcctttt
tttcttttccatctcccttagaatctcctaacatgttttcaggctttaaa
tactagtctattttacctcgggttttaagtggaatcatatagtattctgt
gctgtctttttaattttatatagcatgatgtttatgctgtttatccatgt
tatagcacatttaggacgcagttacgttcgcatacatcagcaactctgca
gccccatcccctctgcactgtcaggcactccagttgaggttgctggtcct
ccatgagtgggtttctccaccaattgctaactcttcctcacacttcctgc
tatccagttgccacagctctttggatcaacaaaaaatgattgtttagctc
cattacctcagataggctgtagtggtgctcaggcaaagcagcttggtcat
ccatggtaaaggaatagtatttaatctttgcatccatttattagttttaa
tgatttgttgatctaattttcattatgcctctaaaataaacaacaaagat
aatgtaaaagtgaccaggttattcccatttcttatctccatggaaagtaa
tgataaaatctagacacatttattatgaattgaggtctttatgggagact
ttcttatataattaaaattttataaaagtatataataaaatattgttatt
cctgatggatttgcagattgccctttctaattcattgaagaaatgagttg
gaattttgatgggtattgcattgaatctgtagattgctttcggcaagata
gccatttttactatattgattctgccaatccatgagcatgggagatcttt
tcatcttctgagatcttctttaatttctttcttcagagacttgagttctt
ttcatacagatttttttcttcttagtagagtcatgcaaggtattttatat
tattgtgactattgagagggtggtgttcctaatttctttctcagtctgtt
tagcctttgtgtacgaaagccatgactggttggtattttaatcacgctac
tcactgagcatttatcacggtttagatcgtgatggaatt
gaattccaatgagttggtttccaaaatgatgaatgaattatctatactaa
gtaaaaataattacttttaaaaagttaaatattttatcccttcaatattg
ggtgtttgttgtcgattctttgttactaagtggtccatggtaggttacta
tattgaaggaaaaagtttttttttttcagtatatcaatgcgtacagtgat
taacatctcaatcagtaaaattttaatcacatcaactgtctaactaaatc
tacagccaattatattgagaagcaataattaataaatctttaaccataga
aatctattttcatagagaaaataagtttaaaatattataactgtgtttgg
aaatttaattggtgcttatgtattaccaataattttacaaccctattctc
tttatactgttttttcaaatttatttagagtctagaaatccaatgtgtaa
cgtatctgttaatattgtggtgaacaaacaaaatgatttatgacctgttt
tccatgcagatgcgttaactccagcagtcacttgttcttccttagagtaa
aatggacgttccgtatatgcactttctatctaaagatcgttgctttaaac
aaacaccaaaagctttttacataggacctcagatgattcattgcacatgt
ccccagttagtgacctagcttcctttctaaaaccatattagcatccatca
atgcagatatttctttgatatttcctttatttgctttttatatatttaca
ttctttatttactacaatgaccaaagcctggggatttatattttactatt
atgtgaattatacatatgttatcagttaatagccaattccttgtatctga
aacattctagaattagggatagtttgctagattaaaaaaaaaatggtgcc
atgagagagacctaaccttgtctgagcaaatgtgttaatgaatctcattt
acatctgtaaaaatgtaaacagcacaaatgctataaaggttagacatact
acatttctcataaaatattaagcattaatgcagtgatttttggtaacaga
tcagccctatattgtaggaacctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_134095602_134096812
seq2: B6Ng01-028B05.b_44_1232 (reverse)

seq1  AATTCCATCAGAGAACTCCTAAACC-TGATAAATAGCTTCAGTGAAGTAG  49
      ||||||||||  ||    ||||||| |||||||| || |||||| |||||
seq2  AATTCCATCA-CGA---TCTAAACCGTGATAAAT-GC-TCAGTG-AGTAG  43

seq1  CTGGATATAAAATTAACTCAAACAAGTCAATGGCCTTTCTGTACACAAAG  99
      |  ||| ||||||     | ||| |||| |||| ||||| ||||||||||
seq2  CGTGAT-TAAAAT----ACCAACCAGTC-ATGG-CTTTC-GTACACAAAG  85

seq1  GCTAAACAGACTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGT  149
      |||||||||||||||||||||||||||  |||| ||||| ||||||||||
seq2  GCTAAACAGACTGAGAAAGAAATTAGG--AACACCACCC-TCTCAATAGT  132

seq1  CACAAATAATATAAAATACCTTGGCATGACTCTAACTAAGGAAGAGAAAG  199
      ||| |||||||||||||||||| |||||||||| ||||| ||||| ||| 
seq2  CAC-AATAATATAAAATACCTT-GCATGACTCT-ACTAA-GAAGAAAAAA  178

seq1  ATCTGTATGAAAAGAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGAT  249
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATCTGTATGAAAAGAAC-TCAAGTCTCTGAAGAAAGAAATTAAAGAAGAT  227

seq1  CTCAGAAGATGAAAAGATCTCCCATGCTCATGGATTGGCAGAATCAATAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAGATGAAAAGATCTCCCATGCTCATGGATTGGCAGAATCAATAT  277

seq1  AGTAAAAATGGCTATCTTGCCGAAAGCAATCTACAGATTCAATGCAATAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAATGGCTATCTTGCCGAAAGCAATCTACAGATTCAATGCAATAC  327

seq1  CCATCAAAATTCCAACTCATTTCTTCAATGAATTAGAAAGGGCAATCTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAAAATTCCAACTCATTTCTTCAATGAATTAGAAAGGGCAATCTGC  377

seq1  AAATCCATCAGGAATAACAATATTTTATTATATACTTTTATAAAATTTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCATCAGGAATAACAATATTTTATTATATACTTTTATAAAATTTTA  427

seq1  ATTATATAAGAAAGTCTCCCATAAAGACCTCAATTCATAATAAATGTGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATAAGAAAGTCTCCCATAAAGACCTCAATTCATAATAAATGTGTC  477

seq1  TAGATTTTATCATTACTTTCCATGGAGATAAGAAATGGGAATAACCTGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTTATCATTACTTTCCATGGAGATAAGAAATGGGAATAACCTGGT  527

seq1  CACTTTTACATTATCTTTGTTGTTTATTTTAGAGGCATAATGAAAATTAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTACATTATCTTTGTTGTTTATTTTAGAGGCATAATGAAAATTAG  577

seq1  ATCAACAAATCATTAAAACTAATAAATGGATGCAAAGATTAAATACTATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACAAATCATTAAAACTAATAAATGGATGCAAAGATTAAATACTATT  627

seq1  CCTTTACCATGGATGACCAAGCTGCTTTGCCTGAGCACCACTACAGCCTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACCATGGATGACCAAGCTGCTTTGCCTGAGCACCACTACAGCCTA  677

seq1  TCTGAGGTAATGGAGCTAAACAATCATTTTTTGTTGATCCAAAGAGCTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGTAATGGAGCTAAACAATCATTTTTTGTTGATCCAAAGAGCTGT  727

seq1  GGCAACTGGATAGCAGGAAGTGTGAGGAAGAGTTAGCAATTGGTGGAGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACTGGATAGCAGGAAGTGTGAGGAAGAGTTAGCAATTGGTGGAGAA  777

seq1  ACCCACTCATGGAGGACCAGCAACCTCAACTGGAGTGCCTGACAGTGCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTCATGGAGGACCAGCAACCTCAACTGGAGTGCCTGACAGTGCAG  827

seq1  AGGGGATGGGGCTGCAGAGTTGCTGATGTATGCGAACGTAACTGCGTCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATGGGGCTGCAGAGTTGCTGATGTATGCGAACGTAACTGCGTCCT  877

seq1  AAATGTGCTATAACATGGATAAACAGCATAAACATCATGCTATATAAAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGCTATAACATGGATAAACAGCATAAACATCATGCTATATAAAAT  927

seq1  TAAAAAGACAGCACAGAATACTATATGATTCCACTTAAAACCCGAGGTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGACAGCACAGAATACTATATGATTCCACTTAAAACCCGAGGTAA  977

seq1  AATAGACTAGTATTTAAAGCCTGAAAACATGTTAGGAGATTCTAAGGGAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGACTAGTATTTAAAGCCTGAAAACATGTTAGGAGATTCTAAGGGAG  1027

seq1  ATGGAAAAGAAAAAAAGGAAAAGTTTAATGGTATTTAGTGGTTATGGAAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAAGAAAAAAAGGAAAAGTTTAATGGTATTTAGTGGTTATGGAAC  1077

seq1  TTATGTTCAGAGTGGTAAAGGTTTAATATAGACAGTAATGCTGGCCATGT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTCAGAGTGGTAAAGGTTTAATATAGACAGTAATGCTGGCCATGT  1127

seq1  ATAACTGTCAGTGTGATCAATTCCATTGGGTGATTTGGCCTCCAGTGTGC  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGTCAGTGTGATCAATTCCATTGGGTGATTTGGCCTCCAGTGTGC  1177

seq1  AATACAGAATTC  1211
      ||||||||||||
seq2  AATACAGAATTC  1189

seq1: chr3_133981016_133982115
seq2: B6Ng01-028B05.g_64_1139

seq1  GAATTCCAATGAGTTGGTTTCCAAAATGATGAATGAATTATCTATACTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATGAGTTGGTTTCCAAAATGATGAATGAATTATCTATACTAA  50

seq1  GTAAAAATAATTACTTTTAAAAAGTTAAATATTTTATCCCTTCAATATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAATAATTACTTTTAAAAAGTTAAATATTTTATCCCTTCAATATTG  100

seq1  GGTGTTTGTTGTCGATTCTTTGTTACTAAGTGGTCCATGGTAGGTTACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTGTTGTCGATTCTTTGTTACTAAGTGGTCCATGGTAGGTTACTA  150

seq1  TATTGAAGGAAAAAGTTTTTTTTTTTCAGTATATCAATGCGTACAGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAGGAAAAAGTTTTTTTTTTTCAGTATATCAATGCGTACAGTGAT  200

seq1  TAACATCTCAATCAGTAAAATTTTAATCACATCAACTGTCTAACTAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCTCAATCAGTAAAATTTTAATCACATCAACTGTCTAACTAAATC  250

seq1  TACAGCCAATTATATTGAGAAGCAATAATTAATAAATCTTTAACCATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCCAATTATATTGAGAAGCAATAATTAATAAATCTTTAACCATAGA  300

seq1  AATCTATTTTCATAGAGAAAATAAGTTTAAAATATTATAACTGTGTTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATTTTCATAGAGAAAATAAGTTTAAAATATTATAACTGTGTTTGG  350

seq1  AAATTTAATTGGTGCTTATGTATTACCAATAATTTTACAACCCTATTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAATTGGTGCTTATGTATTACCAATAATTTTACAACCCTATTCTC  400

seq1  TTTATACTGTTTTTTCAAATTTATTTAGAGTCTAGAAATCCAATGTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACTGTTTTTTCAAATTTATTTAGAGTCTAGAAATCCAATGTGTAA  450

seq1  CGTATCTGTTAATATTGTGGTGAACAAACAAAATGATTTATGACCTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATCTGTTAATATTGTGGTGAACAAACAAAATGATTTATGACCTGTTT  500

seq1  TCCATGCAGATGCGTTAACTCCAGCAGTCACTTGTTCTTCCTTAGAGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCAGATGCGTTAACTCCAGCAGTCACTTGTTCTTCCTTAGAGTAA  550

seq1  AATGGACGTTCCGTATATGCACTTTCTATCTAAAGATCGTTGCTTTAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACGTTCCGTATATGCACTTTCTATCTAAAGATCGTTGCTTTAAAC  600

seq1  AAACACCAAAAGCTTTTTACATAGGACCTCAGATGATTCATTGCACATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCAAAAGCTTTTTACATAGGACCTCAGATGATTCATTGCACATGT  650

seq1  CCCCAGTTAGTGACCTAGCTTCCTTTCTAAAACCATATTAGCATCCATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTTAGTGACCTAGCTTCCTTTCTAAAACCATATTAGCATCCATCA  700

seq1  ATGCAGATATTTCTTTGATATTTCCTTTATTTGCTTTTTATATATTTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGATATTTCTTTGATATTTCCTTTATTTGCTTTTTATATATTTACA  750

seq1  TTCTTTATTTACTACAATGACCAAAGCCTGGGGATTTATATTTTACTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATTTACTACAATGACCAAAGCCTGGGGATTTATATTTTACTATT  800

seq1  ATGTGAATTATACATATGTTATCAGTTAATAGCCAATTCCTTGTATCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAATTATACATATGTTATCAGTTAATAGCCAATTCCTTGTATCTGA  850

seq1  AACATTCTAGAATTAGGGATAGTTTGCTAGAATTAAAAAAAAAAATGGTG  900
      |||||||||||||||||||||||||||||||  | |||||||||||||||
seq2  AACATTCTAGAATTAGGGATAGTTTGCTAGA--TTAAAAAAAAAATGGTG  898

seq1  CCATGAGAGAAGACCTAACCTTGTCTGAGGCAAAATGTGTTAATGAAATC  950
      ||||||||| |||||||||||||||||||   ||||||||||||| ||||
seq2  CCATGAGAG-AGACCTAACCTTGTCTGAG--CAAATGTGTTAATG-AATC  944

seq1  TCCATTTACATCTGTAAAAAATGTAAACAGGCACAAATGCTATAAAAGGT  1000
      | ||||||||||||| ||||||||||||| ||||||||||||||||  | 
seq2  T-CATTTACATCTGT-AAAAATGTAAACA-GCACAAATGCTATAAA--GG  989

seq1  TTAGAACATAACTACATTTCTCATAAAATTATTAAGCATTAAATGCAGTT  1050
      |||| |||| |||||||||||||||||| ||||||||||| |||||||| 
seq2  TTAG-ACAT-ACTACATTTCTCATAAAA-TATTAAGCATT-AATGCAGT-  1034

seq1  GAATTTTTGTGTAAAACAAGATCAGCCACTAATATTGTAGGAAACCTAGA  1100
        ||||||| ||||    ||||||||| || |||||||||| ||||||||
seq2  -GATTTTTG-GTAA---CAGATCAGCC-CT-ATATTGTAGG-AACCTAGA  1076