BAC Information

Click to search

BAC

Clone NameB6Ng01-028B14
Chromosome3 (Build37)
Map Location 111,521,228 - 111,603,003
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043190, LOC668712
Downstream geneLOC625585, EG229746, LOC668717
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028B14.bB6Ng01-028B14.g
ACCDH858668DH858669
length1,1711,088
definitionDH858668|Mus musculus domesticus DNA, BAC clone: B6Ng01-028B14, 5' end.DH858669|Mus musculus domesticus DNA, BAC clone: B6Ng01-028B14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,601,824 - 111,603,003)(111,521,228 - 111,522,335)
sequence
gaattcactattttcattcaagattaatgactttagtttcgatgagaacc
tatttatcttcagagtatttcatatgatgcctatccaatccagggtcttc
taaatgtaacttgttgtatttctagccctgattctaaatattttagaagt
tgatcaaaatgaagctataaaagaaaagctttcacccacataattaatga
atgaaaagtaaaatattaagaactaaatttatctagtggcttgctcctgt
aaccagctaaaaaaattaaactgagaaaaataatatctgtcttctgcata
taattcagtataatgtctgatgagataagagtttccaggtgttttcatct
taagttaaatgattatgagacagaagattttatggcagttcttgcaaggc
agtgctaccactctttctgagatagaattttggaaaatacaagttacatt
gaaaaaaagaaaagaaaccttatacattgcctgaaaagtgcagtattgac
aaagtacacacacacacacacacacacacacacacacacatgcatatata
ttcagtaaatgtactcatagagtatcacagtagggaatgtatgacactca
ttcttgtgtagtacctaaatccacattaatcggacatgaaatagtaagga
taatgagcattcctagttaaacaaaagagcattatgataattgtaaaatc
tttttaaagagtctcatgccttattgactaaactgagcacttggaaatct
tttgtgttaaaatggaaaaacaatgggaatagtccatactcccatttcca
agagtatagagtacagagatgtgcttttcttagaatgaattcaatgatgc
attaggcctatcagtttgttaaaaaggagattaaactttaggatcctcca
agattctatagctcatgttcttgaatataattgctgaattatattggttg
ttgtgtaaatagataattttgtattattttattttaaaagtttatatata
tatatatatacacacacacacatatataaatatgtatatatatatatata
tattaaatataatatataatatatgctagagtcattgatcgtttaatgaa
cgaatatggatataccataataaaactaatcaactaatggggtggggagc
cgcccccatattccgtcacaa
gaattcacactctgtatcgttattttatgtgaaatagtatcttattattg
acatatagcttcccttcagtttaaattcttcaaagacttaagtgtctgct
tgcttgcttgcttccttccttccttccttccttccttccttccaagcttc
cttccttccttgcttcctccctcactccctcccttccttccttccttcct
ttttgtttagtagtattcctctgaatattgatcttaaaactaataaaaat
acactaattttttaatggaattgtcttcaagcaagtgtcctttaattcaa
ttatagaaatttatgagtaataatgttcccacaataattaaaaccctaca
ttaaaagaattacagacttatctttgggatattaaacattacacaacaca
tctaaattaggtaaaattttgtgcaatttgtgtgaaataaactgctattt
aaattctatatttgttatatgcaaagtattccatatttaaacaaatatag
ctgaagatccaagtaatccaataattgtattttgttgttaaataagtaac
ttgttgcatttgtctactgtatcaatattataccacaattttaaaagggc
ctttacatcataatgtaccattgagtaagttaacttttaaatgcaattgt
ggtactattttttcttaattatattgtgccatgtgagatttataaaacta
gtaatagaatatatgcattaaggtgatcaccatttacggcagtttaaatg
tgatttttttttttaatgataatagagatatgcaagttagaactgggtgt
cactgcctgaaaccaaggacgattcaaagactatgttgcttgataggaaa
gaaaatatgttccttgcccttcaaaatttatattgtgcaaatgtattctc
tgccatctgacctaagtcatataatttgaaaatctcaatttatttcacta
gactcattcatgcttctgtctcagtcttttcaatatggacattgattata
tcatccccacgtgatatgacaagatcgccttgcagccatgtgtgagcatt
cactatttagcccttacataacattaactgagccattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_111601824_111603003
seq2: B6Ng01-028B14.b_46_1216 (reverse)

seq1  TTGTGACGGCGAATGTGGGGGCGGCTCCCAACACCATATGTTGATTAAGT  50
      ||||||||  |||| |||||||||||||| || ||||  ||||||| |||
seq2  TTGTGACG--GAATATGGGGGCGGCTCCCCACCCCATTAGTTGATT-AGT  47

seq1  TTTAGATAATGGTAAATGCATTATCTGTTATTAAATGAACACTGACTCTA  100
      |||  || |||||| || |||  ||  | |||||| || || ||||||| 
seq2  TTT--ATTATGGTATATCCATATTCGTTCATTAAACGATCAATGACTCT-  94

seq1  AGCATATATATATATATATATATATATATATATATATATATATATACATA  150
      ||||||||| ||||||| ||||| || |||||||||||||||||||||||
seq2  AGCATATAT-TATATAT-TATATTTA-ATATATATATATATATATACATA  141

seq1  TATATATATGTGTGTGTGTGTATATATATATATATATAAACTTTTAAAAT  200
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATATGTGTGTGTGTGTATATATATATATATATAAACTTTTAAAAT  191

seq1  AAAATAATACAAAATTATCTATTTACACAACAACCAATATAATTCAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATACAAAATTATCTATTTACACAACAACCAATATAATTCAGCAA  241

seq1  TTATATTCAAGAACATGAGCTATAGAATCTTGGAGGATCCTAAAGTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTCAAGAACATGAGCTATAGAATCTTGGAGGATCCTAAAGTTTAA  291

seq1  TCTCCTTTTTAACAAACTGATAGGCCTAATGCATCATTGAATTCATTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTTTAACAAACTGATAGGCCTAATGCATCATTGAATTCATTCTA  341

seq1  AGAAAAGCACATCTCTGTACTCTATACTCTTGGAAATGGGAGTATGGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGCACATCTCTGTACTCTATACTCTTGGAAATGGGAGTATGGACT  391

seq1  ATTCCCATTGTTTTTCCATTTTAACACAAAAGATTTCCAAGTGCTCAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCATTGTTTTTCCATTTTAACACAAAAGATTTCCAAGTGCTCAGTT  441

seq1  TAGTCAATAAGGCATGAGACTCTTTAAAAAGATTTTACAATTATCATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAATAAGGCATGAGACTCTTTAAAAAGATTTTACAATTATCATAAT  491

seq1  GCTCTTTTGTTTAACTAGGAATGCTCATTATCCTTACTATTTCATGTCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTTGTTTAACTAGGAATGCTCATTATCCTTACTATTTCATGTCCG  541

seq1  ATTAATGTGGATTTAGGTACTACACAAGAATGAGTGTCATACATTCCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGTGGATTTAGGTACTACACAAGAATGAGTGTCATACATTCCCTA  591

seq1  CTGTGATACTCTATGAGTACATTTACTGAATATATATGCATGTGTGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATACTCTATGAGTACATTTACTGAATATATATGCATGTGTGTGTG  641

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTACTTTGTCAATACTGCACTTTTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTACTTTGTCAATACTGCACTTTTCAG  691

seq1  GCAATGTATAAGGTTTCTTTTCTTTTTTTCAATGTAACTTGTATTTTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTATAAGGTTTCTTTTCTTTTTTTCAATGTAACTTGTATTTTCCA  741

seq1  AAATTCTATCTCAGAAAGAGTGGTAGCACTGCCTTGCAAGAACTGCCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTATCTCAGAAAGAGTGGTAGCACTGCCTTGCAAGAACTGCCATA  791

seq1  AAATCTTCTGTCTCATAATCATTTAACTTAAGATGAAAACACCTGGAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTCTGTCTCATAATCATTTAACTTAAGATGAAAACACCTGGAAAC  841

seq1  TCTTATCTCATCAGACATTATACTGAATTATATGCAGAAGACAGATATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCTCATCAGACATTATACTGAATTATATGCAGAAGACAGATATTA  891

seq1  TTTTTCTCAGTTTAATTTTTTTAGCTGGTTACAGGAGCAAGCCACTAGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCAGTTTAATTTTTTTAGCTGGTTACAGGAGCAAGCCACTAGAT  941

seq1  AAATTTAGTTCTTAATATTTTACTTTTCATTCATTAATTATGTGGGTGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAGTTCTTAATATTTTACTTTTCATTCATTAATTATGTGGGTGAA  991

seq1  AGCTTTTCTTTTATAGCTTCATTTTGATCAACTTCTAAAATATTTAGAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTCTTTTATAGCTTCATTTTGATCAACTTCTAAAATATTTAGAAT  1041

seq1  CAGGGCTAGAAATACAACAAGTTACATTTAGAAGACCCTGGATTGGATAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTAGAAATACAACAAGTTACATTTAGAAGACCCTGGATTGGATAG  1091

seq1  GCATCATATGAAATACTCTGAAGATAAATAGGTTCTCATCGAAACTAAAG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCATATGAAATACTCTGAAGATAAATAGGTTCTCATCGAAACTAAAG  1141

seq1  TCATTAATCTTGAATGAAAATAGTGAATTC  1180
      ||||||||||||||||||||||||||||||
seq2  TCATTAATCTTGAATGAAAATAGTGAATTC  1171

seq1: chr3_111521228_111522335
seq2: B6Ng01-028B14.g_66_1153

seq1  GAATTCACACTCTGTATCGTTATTTTATGTGAAATAGTATCTTATTATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTCTGTATCGTTATTTTATGTGAAATAGTATCTTATTATTG  50

seq1  ACATATAGCTTCCCTTCAGTTTAAATTCTTCAAAGACTTAAGTGTCTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAGCTTCCCTTCAGTTTAAATTCTTCAAAGACTTAAGTGTCTGCT  100

seq1  TGCTTGCTTGCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCAAGCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCTTGCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCAAGCTTC  150

seq1  CTTCCTTCCTTGCTTCCTCCCTCACTCCCTCCCTTCCTTCCTTCCTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCCTTGCTTCCTCCCTCACTCCCTCCCTTCCTTCCTTCCTTCCT  200

seq1  TTTTGTTTAGTAGTATTCCTCTGAATATTGATCTTAAAACTAATAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTAGTAGTATTCCTCTGAATATTGATCTTAAAACTAATAAAAAT  250

seq1  ACACTAATTTTTTAATGGAATTGTCTTCAAGCAAGTGTCCTTTAATTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAATTTTTTAATGGAATTGTCTTCAAGCAAGTGTCCTTTAATTCAA  300

seq1  TTATAGAAATTTATGAGTAATAATGTTCCCACAATAATTAAAACCCTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAAATTTATGAGTAATAATGTTCCCACAATAATTAAAACCCTACA  350

seq1  TTAAAAGAATTACAGACTTATCTTTGGGATATTAAACATTACACAACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGAATTACAGACTTATCTTTGGGATATTAAACATTACACAACACA  400

seq1  TCTAAATTAGGTAAAATTTTGTGCAATTTGTGTGAAATAAACTGCTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATTAGGTAAAATTTTGTGCAATTTGTGTGAAATAAACTGCTATTT  450

seq1  AAATTCTATATTTGTTATATGCAAAGTATTCCATATTTAAACAAATATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTATATTTGTTATATGCAAAGTATTCCATATTTAAACAAATATAG  500

seq1  CTGAAGATCCAAGTAATCCAATAATTGTATTTTGTTGTTAAATAAGTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGATCCAAGTAATCCAATAATTGTATTTTGTTGTTAAATAAGTAAC  550

seq1  TTGTTGCATTTGTCTACTGTATCAATATTATACCACAATTTTAAAAGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCATTTGTCTACTGTATCAATATTATACCACAATTTTAAAAGGGC  600

seq1  CTTTACATCATAATGTACCATTGAGTAAGTTAACTTTTAAATGCAATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACATCATAATGTACCATTGAGTAAGTTAACTTTTAAATGCAATTGT  650

seq1  GGTACTATTTTTTCTTAATTATATTGTGCCATGTGAGATTTATAAAACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTATTTTTTCTTAATTATATTGTGCCATGTGAGATTTATAAAACTA  700

seq1  GTAATAGAATATATGCATTAAGGTGATCACCATTTACGGCAGTTTAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAGAATATATGCATTAAGGTGATCACCATTTACGGCAGTTTAAATG  750

seq1  TGATTTTTTTTTTTAATGATAATAGAGATATGCAAGTTAGAACTGGGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTTTTTTTAATGATAATAGAGATATGCAAGTTAGAACTGGGTGT  800

seq1  CACTGCCTGAAACCAAGGACGATTCAAAGACTATGTTGCTTGATAGGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCTGAAACCAAGGACGATTCAAAGACTATGTTGCTTGATAGGAAA  850

seq1  GAAAATATGTTCCTTGCCCTTCAAAATTTATATTGTGCAAATGTATTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATGTTCCTTGCCCTTCAAAATTTATATTGTGCAAATGTATTCTC  900

seq1  TGCCATCTGACCTAAGTCATATAATTTGAAAATCTCAATTTATTTCACTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGCCATCTGACCTAAGTCATATAATTTGAAAATCTCAATTTATTTCACT-  949

seq1  AGACCTCATTCATGCTTCTGTCTCAGTCTTTTTCAATATGGACAATTGAT  1000
      ||| |||||||||||||||||||||||| |||||||||||||| ||||||
seq2  AGA-CTCATTCATGCTTCTGTCTCAGTC-TTTTCAATATGGAC-ATTGAT  996

seq1  TATATCATCCCCACGTGAATATGACAAAGAATCGCCTTGGAGCAATTGTG  1050
      ||||||||||||||||| |||||||||   ||||||||| ||| | ||||
seq2  TATATCATCCCCACGTG-ATATGACAA--GATCGCCTTGCAGCCA-TGTG  1042

seq1  TGAGCATTTTAACCTAATTTTAAGCACCTTTACCATTAACACATTAACTG  1100
      ||||||||       | | || ||  || ||||    |  ||||||||||
seq2  TGAGCATT------CACTATTTAG--CCCTTAC----ATAACATTAACTG  1080

seq1  AGCCATTT  1108
      ||||||||
seq2  AGCCATTT  1088