BAC Information

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BAC

Clone NameB6Ng01-028D06
Chromosome3 (Build37)10 (Build37)
Map Location 41,059,188 - 41,059,73756,832,116 - 56,832,963
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028D06.bB6Ng01-028D06.g
ACCDH858744DH858745
length953844
definitionDH858744|Mus musculus domesticus DNA, BAC clone: B6Ng01-028D06, 5' end.DH858745|Mus musculus domesticus DNA, BAC clone: B6Ng01-028D06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,188 - 41,059,737)(56,832,116 - 56,832,963)
sequence
gaattctttgtttagctctgagtcccatattttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatattttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacagtgtcttatgccttacagaagctttgtagtttta
tgaggtcccatttgttgattcaagatcttacagcataagccattactgtt
ctattcaggaattttccccctgtgcccatatcttcaaggctttcccccac
tttctcttctatagatttcactgtctcgggttttatgtggagttccttga
tccacgtagatttgaccttagtacaaggagataggaatggatcaattcgc
attcttctatatgataaccaccagttgtgccagcaccatttgttgaaatt
gctgtctttttttccattggatggtttttgttcccttgtcaaagatcaag
cgaccataggtgtgtgggttcatctctgggtcttcaattctatttcattg
gtctacttgtctgttgctataccagtaccatgaagttttttatcacaatt
gctttgtagtacagctttaggtcaggcatggtgattccaccagaggttct
tttgttcttgagaagagattttgctatcctcggttttttgttattccaga
tgaatttgcagattgccctttctaattcgttgaagaattgagttggaatt
ttgatggggattgcattgaatctgtagattgctttcagcaagatagccat
tttcgctatattgatcctgcccatccatgaacatgggagatctttccatc
ttctgagatcttctttaatttctttcttcagagacttgaagttcttatca
tacagatctttcacttccttagttagagtcacgccaaggtattttatatt
att
gaattcccctggtacaggtttcttcattaggcccagaggaatagcataat
caggtatttactaaagaaccgctggtggtgggtttaacaagagactagca
ttgcatcagagcattcacctggctccattttaagtggtaagcatggcctg
gtcctgggcatctttttatgtatgcattctttttattttatttatttatt
tatttatttgtttgtttgtttgtttgtttgtttgtttgtttgttttgtgt
caatgtaacttggcagatgtgttcgcctgggtttttttttgtttttcctc
tgtataaaaaagtctggtgttcctttggacaatacatttagatccacact
cccttgtgtcatgtctgtttgtcacctcccctctcgccaactccgtgtcc
acctgctggaactcctgatttcccacagattgaggggggcctgactaggc
ccagtccgtggcaaaaacaaaacaaaaacagccagcagacaagcaaaaag
gaccagaatgggggtagagtgggcacaaaggcaagtgaaccctttgggac
accatctcaggatggtaagacagcacaccatgtccatttgtaaaactatt
gtgagtttaaattgaaacccattagtcaggtagtgtatttcttttccagc
tatgttcaattactttgacctaacgaaaaggaatacttgagttgaagtcg
tggagctgtcaagactaatatatttgattaaggagaaaatgagaagccga
agagtgtttgaccactgctctctcagactgactgtagaacattgtccaag
acttttccttttgggtccctgagttcaagtcccctgaaagtgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059188_41059737
seq2: B6Ng01-028D06.b_43_594 (reverse)

seq1  GACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGG  50
      |||||||| ||||||||||||||| |||| | ||| ||||||||||||||
seq2  GACCAATGAAATAGAATTGAAGACCCAGAGATGAACCCACACACCTATGG  50

seq1  TCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGG-AAAAAAGAC  99
      || ||||||||| ||||||||| | ||||||||||| ||| |||||||||
seq2  TCGCTTGATCTTTGACAAGGGAACAAAAACCATCCAATGGAAAAAAAGAC  100

seq1  AGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAG  149
      |||| ||||||||||||||||||||||||||||| |||||||| ||||||
seq2  AGCAATTTCAACAAATGGTGCTGGCACAACTGGTGGTTATCATATAGAAG  150

seq1  AATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGT  199
      |||||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  AATGCGAATTGATCCATTCCTATCTCCTTGTACTAAGGTCAAATCTACGT  200

seq1  GGATCAAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAG  249
      |||||||||||| |||||||||||| |||||| |||||  |||||| |||
seq2  GGATCAAGGAACTCCACATAAAACCCGAGACAGTGAAATCTATAGAAGAG  250

seq1  AAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCA  299
      ||||||||| |||||||||||||||||| |||||||| |||||||||| |
seq2  AAAGTGGGGGAAAGCCTTGAAGATATGGGCACAGGGGGAAAATTCCTGAA  300

seq1  TAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACC  349
      |||||||| |||||||| |||||||||||   ||||  ||||||||||||
seq2  TAGAACAGTAATGGCTTATGCTGTAAGATCTTGAATCAACAAATGGGACC  350

seq1  TCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACA  399
      |||| ||||| ||||||||||| |||||| ||||||| ||||||||||||
seq2  TCATAAAACTACAAAGCTTCTGTAAGGCATAAGACACTGTCAATAAGACA  400

seq1  AAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  448
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  450

seq1  TAGGGGACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCA  498
      |||||||||||||||||| |||||| ||||||||||||||||||| ||||
seq2  TAGGGGACTAATATCCAAAATATATAAAGAACTCAAGAAGGTGGACTCCA  500

seq1  GAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAA  548
      |||||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  GAAAATCAAATAACCCCATTAAAATATGGGACTCAGAGCTAAACAAAGAA  550

seq1  TT  550
      ||
seq2  TT  552

seq1: chr10_56832116_56832963
seq2: B6Ng01-028D06.g_65_906

seq1  GAATTCCCCTGGTACAGGTTTCTTCATTAGGCCCAGAGGAATAGCATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTGGTACAGGTTTCTTCATTAGGCCCAGAGGAATAGCATAAT  50

seq1  CAGGTATTTACTAAAGAACCGCTGGTGGTGGGTTTAACAAGAGACTAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATTTACTAAAGAACCGCTGGTGGTGGGTTTAACAAGAGACTAGCA  100

seq1  TTGCATCAGAGCATTCACCTGGCTCCATTTTAAGTGGTAAGCATGGCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCAGAGCATTCACCTGGCTCCATTTTAAGTGGTAAGCATGGCCTG  150

seq1  GTCCTGGGCATCTTTTTATGTATGCATTCTTTTTATTTTATTTATTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGGCATCTTTTTATGTATGCATTCTTTTTATTTTATTTATTTATT  200

seq1  TATTTATTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTGTGT  250

seq1  CAATGTAACTTGGCAGATGTGTTCGCCTGGGTTTTTTTTTGTTTTTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAACTTGGCAGATGTGTTCGCCTGGGTTTTTTTTTGTTTTTCCTC  300

seq1  TGTATAAAAAAGTCTGGTGTTCCTTTGGACAATACATTTAGATCCACACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAAAAAGTCTGGTGTTCCTTTGGACAATACATTTAGATCCACACT  350

seq1  CCCTTGTGTCATGTCTGTTTGTCACCTCCCCTCTCGCCAACTCCGTGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTGTCATGTCTGTTTGTCACCTCCCCTCTCGCCAACTCCGTGTCC  400

seq1  ACCTGCTGGAACTCCTGATTTCCCACAGATTGAGGGGGGCCTGACTAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTGGAACTCCTGATTTCCCACAGATTGAGGGGGGCCTGACTAGGC  450

seq1  CCAGTCCGTGGCAAAAACAAAACAAAAACAGCCAGCAGACAAGCAAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCGTGGCAAAAACAAAACAAAAACAGCCAGCAGACAAGCAAAAAG  500

seq1  GACCAGAATGGGGGTAGAGTGGGCACAAAGGCAAGTGAACCCTTTGGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGAATGGGGGTAGAGTGGGCACAAAGGCAAGTGAACCCTTTGGGAC  550

seq1  ACCATCTCAGGATGGTAAGACAGCACAGCATGTCCATTTGTAAAACTATT  600
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACCATCTCAGGATGGTAAGACAGCACACCATGTCCATTTGTAAAACTATT  600

seq1  GTGAGTTTAAATTGAAACCCATTAGTCAGGTAGTGTATTTCTTTTCCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTTAAATTGAAACCCATTAGTCAGGTAGTGTATTTCTTTTCCAGC  650

seq1  TATGTTCAATTACTTTGACCTAACCAAGAGGAATACAATGAGTTGAAGTC  700
      |||||||||||||||||||||||| || ||||||||  ||||||||||||
seq2  TATGTTCAATTACTTTGACCTAACGAAAAGGAATAC-TTGAGTTGAAGTC  699

seq1  GTGGAGCTGTCAGGACAAATATATTTGATACAAGGAGAAAATCAAGAAGC  750
      |||||||||||| ||| ||||||||||||  |||||||||||  ||||||
seq2  GTGGAGCTGTCAAGACTAATATATTTGAT-TAAGGAGAAAAT-GAGAAGC  747

seq1  CGAAGAGTGTTTGACCACTGCTCTCTCTGACAGCACTGTAAAAAAATTGC  800
      ||||||||||||||||||||||||||| ||| | ||||| | || |||| 
seq2  CGAAGAGTGTTTGACCACTGCTCTCTCAGACTG-ACTGT-AGAACATTGT  795

seq1  CAAAGACTTTTCCTTTTAAGTTCCTGAGTTCAAGTCCCCCTGAAAGTG  848
      | |||||||||||||||  || ||||||||||||| ||||||||||||
seq2  CCAAGACTTTTCCTTTTGGGTCCCTGAGTTCAAGT-CCCCTGAAAGTG  842