BAC Information

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BAC

Clone NameB6Ng01-028E06
Chromosome3 (Build37)5 (Build37)
Map Location 41,059,188 - 41,059,737127,041,801 - 127,041,976
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028E06.bB6Ng01-028E06.g
ACCDH858790DH858791
length954176
definitionDH858790|Mus musculus domesticus DNA, BAC clone: B6Ng01-028E06, 5' end.DH858791|Mus musculus domesticus DNA, BAC clone: B6Ng01-028E06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,188 - 41,059,737)(127,041,801 - 127,041,976)
sequence
gaattctttgtttagctctgagccccatcttttaagggggttatttgatt
ttctggagtccaccctcttgagttctttatatatattggatattagtccc
ctatgtgatttaagatagataaagatcctttcccaatctgttggtggcct
tttttgtcttattgacgatgtcttttgccttgcagaagctttgcagtttc
atgaggtcccatttatcaatcctcgatcttacagcacaagcaattgctgt
tctattcaggaatttttcccctgtgcccatatcttcaagggttttcccca
ctttctcctctataagtttcagtgtctctggttttatgtgaagttcctta
atccacttagatttgaccttagtacaaggagataggaatggatcgattca
cattcttctacatgttaacaaccagttgtgccagcaccatttgttgaaaa
tactgtctttcttccactggatggttttagctcccttgtcaaagatcaag
tgacgataggtgtgtgggttcatttctgggtcttcaattctattccgttg
gtctacttgtctgtcactataccagtaccatgcagtttttatcacaattg
ctctgtagtaaagctttaggtctggcatggtgattccaccagaggttctt
ttatccttgagaagagtttttgctatcctaggctttttgttattccagat
gaatttgcagattgctctttctaattcgttgaagaattgagttggaattt
tgatggggattgcattgaatctgtagattgcttttgtcaagatagccatt
tttgcatgttgatcctgccaatccatgagcatgggagatcttttccatct
ttctgagatcttctttaatttctttcttcagagacttgaagtttttatca
tacagatctttcactttctttagttagagtcacaccaagatatttatgtt
attt
aaagaaaatgcaaattctctctgtatccttgtgtgagtctggaggcaaca
catggataagcatgtcctctgggagcttgggcaatgtctctgggcaggta
gatgtgtaaattatgtatggatcttaggggaaagggctggttgaaagagg
tgtgtaatagtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059188_41059737
seq2: B6Ng01-028E06.b_37_588 (reverse)

seq1  GACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGG  50
      |||||| ||||||||||||||||| |||||| ||| |||||||||||| |
seq2  GACCAACGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATCG  50

seq1  TCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACA  100
      |||||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  TCACTTGATCTTTGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACA  100

seq1  GCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGA  150
      | |||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTAACATGTAGAAGA  150

seq1  ATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTG  200
      ||| |||| |||||| ||||||||||||||||||||||||||||||||||
seq2  ATGTGAATCGATCCATTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTG  200

seq1  GATCAAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGA  250
      ||| |||||||  |||||||||||||||||||||||||||||||||||||
seq2  GATTAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGA  250

seq1  AAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCAT  300
      |||||||||||| |||||||||||||| ||||||||||||||||||| ||
seq2  AAGTGGGGAAAACCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAAT  300

seq1  AGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCT  350
      ||||||||||| |||||||||||||||| ||| || || |||||||||||
seq2  AGAACAGCAATTGCTTGTGCTGTAAGATCGAGGATTGATAAATGGGACCT  350

seq1  CATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAA  400
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACATCGTCAATAAGACAA  400

seq1  AAA--GGCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  448
      |||  | ||||||||||||||||||||||||||| ||||| ||||||| |
seq2  AAAAGGCCACCAACAGATTGGGAAAGGATCTTTATCTATCTTAAATCACA  450

seq1  TAGGGGACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCA  498
      ||||||||||||||||||||||||| |||||||||||| |||||| ||||
seq2  TAGGGGACTAATATCCAATATATATAAAGAACTCAAGAGGGTGGACTCCA  500

seq1  GAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAA  548
      ||||||||||||||||| |||||| |||||||||||||||||||||||||
seq2  GAAAATCAAATAACCCCCTTAAAAGATGGGGCTCAGAGCTAAACAAAGAA  550

seq1  TT  550
      ||
seq2  TT  552

seq1: chr5_127041801_127041976
seq2: B6Ng01-028E06.g_72_247 (reverse)

seq1  CACACACACACACACACTATTACACACCTCTTTCAACCAGCCCTTTCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACTATTACACACCTCTTTCAACCAGCCCTTTCCCC  50

seq1  TAAGATCCATACATAATTTACACATCTACCTGCCCAGAGACATTGCCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATCCATACATAATTTACACATCTACCTGCCCAGAGACATTGCCCAA  100

seq1  GCTCCCAGAGGACATGCTTATCCATGTGTTGCCTCCAGACTCACACAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCAGAGGACATGCTTATCCATGTGTTGCCTCCAGACTCACACAAGG  150

seq1  ATACAGAGAGAATTTGCATTTTCTTT  176
      ||||||||||||||||||||||||||
seq2  ATACAGAGAGAATTTGCATTTTCTTT  176