BAC Information

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BAC

Clone NameB6Ng01-028E10
Chromosome3 (Build37)
Map Location 120,975,409 - 121,119,955
singlet/doubletdoublet
Overlap geneLOC668780, Alg14, Ppia-ps3_1234.1
Upstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778
Downstream geneCnn3, Slc44a3, A730020M07Rik, 4930432M17Rik, F3, Abcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028E10.bB6Ng01-028E10.g
ACCDH858796DH858797
length1,1791,005
definitionDH858796|Mus musculus domesticus DNA, BAC clone: B6Ng01-028E10, 5' end.DH858797|Mus musculus domesticus DNA, BAC clone: B6Ng01-028E10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,975,409 - 120,976,597)(121,118,950 - 121,119,955)
sequence
gaattcctcctttcccctttccaaagctagctatctgtttatcattattt
tcctccaagttacattaacagtacctcaaacaagtattcttaaaaagacc
agatagtaaatagttcgtgggccagatggtcagttactcggatggacatc
taagacctaaaagacaatataattgaatgtgtatgattgccaataaaact
ttatttaccaataacaggtggcaagccttctgtctgccctctgttactca
cactgtagtcagaggatgctatttctaaatgtcacccctctgtttaaata
ctaaatggcctcccactgattgcccataggataaaggtcaaatttcttaa
ttgaataaacaaattacctccattaggcttcctttcttaaccacttctgc
cataactcacttttcatcaacatctagtaactgtaaaatccctacattcc
aaatttcctcttccttctacttgattgtaggtattgctttgggagcctta
gctttctttctcattaagagcattcacccccacctcctcttcctcacctc
caccccagctcagtcgatgccactcatgtgtgttttatgtcccacagaaa
catgacttcccccaggaagccttcagtgacttttctcaagttctaggtct
gatgagattgttggttcatcagatgaatctcctattaatcagcatctaca
tggggttactgctatactcccaagcacagagagagagagagagagagaga
gagagagagagagagagagagagagaaacacatgggttgttgttttgttt
tgttttgttttacttaagagtaaggaaagaaaggggggagtattctgaag
atgaagatggaagggggtttcctggggactagggagcagataaactggga
ttgctttgctttggttttctttcttttttaaccgaagttgctgcttagca
gttgctgcttgctgctttggtttgctgggcggttagcaagcatacatctc
aagatatctggatactctgacaatacaaagcaaatttggttactttcctc
tgagtggcttggcttgcacttctgacaacacttccgctttgatatcatat
ggtaggcaaattcatgccttcggcctcattatcttcttctccaattaact
tcccaaggcctacatagcttctcttgttc
gaattccaggcagaggttaagagagtagcctagagggtgaaggtgcttag
ctgtggactgctatgcagatgagttatttgacctctgtaggctttgacca
tctggttcttaaggccaggcagacgtgtgacaattaaactgttccattat
ttccagttgtgagtccccaaggcctgtggtattacagggaagtggaactt
tgaggggacactacctagagggaggaaggtcactgagacctgaagcctct
ttctctctctccctagcttcctagccacagtcaagtaaggaaccagcttt
ggctctaccgtatattcctgactctgaaatatctacttgctctagcaatg
aactacttgaccgtgacagatttaaatctctgaaagcaagaaccaagaca
aaccctccctccttgtaaattgattttcttccagtattttgttatcattt
tggaaaactagcaagaagactattaactttgcccagatactctttttaaa
tttaaattaaattcagtgttacctcttgaagactgctttttcacttacat
aaccattcaaaagtctggttaatatacaacttaaaaaattgttatccctt
tcaaacgtgagccaaaaaaaaaaaaaaaacctgttgcaatcagggccaac
cccaaaaagatgaacaaaggtcattgaacagttctcttaaaacacacaca
tcttttcatctagctcactcactcattcaacaaataaccactgagtgtct
tctgtgtgtcaggttctgtcctgggctctgagaagtcagcttataaacaa
gacaaattctgggccttgaaagagcactgactgttcttctgaaggtcctg
agttcaatctcagcaaccacatggtggctcacaactacccttaatgagat
ctgacaccctcttctgggatgtctgaagacagctacagtgtacttattta
taataataaataaatctcaaaaaagaagaaagagagagagaagatgaaga
aggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_120975409_120976597
seq2: B6Ng01-028E10.b_44_1222

seq1  GAATTCCTCCTTTCCCCTTTCCAAAGCTAGCTATCTGTTTATCATTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTTTCCCCTTTCCAAAGCTAGCTATCTGTTTATCATTATTT  50

seq1  TCCTCCAAGTTACATTAACAGTACCTCAAACAAGTATTCTTAAAAAGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAAGTTACATTAACAGTACCTCAAACAAGTATTCTTAAAAAGACC  100

seq1  AGATAGTAAATAGTTCGTGGGCCAGATGGTCAGTTACTCGGATGGACATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGTAAATAGTTCGTGGGCCAGATGGTCAGTTACTCGGATGGACATC  150

seq1  TAAGACCTAAAAGACAATATAATTGAATGTGTATGATTGCCAATAAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACCTAAAAGACAATATAATTGAATGTGTATGATTGCCAATAAAACT  200

seq1  TTATTTACCAATAACAGGTGGCAAGCCTTCTGTCTGCCCTCTGTTACTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACCAATAACAGGTGGCAAGCCTTCTGTCTGCCCTCTGTTACTCA  250

seq1  CACTGTAGTCAGAGGATGCTATTTCTAAATGTCACCCCTCTGTTTAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAGTCAGAGGATGCTATTTCTAAATGTCACCCCTCTGTTTAAATA  300

seq1  CTAAATGGCCTCCCACTGATTGCCCATAGGATAAAGGTCAAATTTCTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGGCCTCCCACTGATTGCCCATAGGATAAAGGTCAAATTTCTTAA  350

seq1  TTGAATAAACAAATTACCTCCATTAGGCTTCCTTTCTTAACCACTTCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAAACAAATTACCTCCATTAGGCTTCCTTTCTTAACCACTTCTGC  400

seq1  CATAACTCACTTTTCATCAACATCTAGTAACTGTAAAATCCCTACATTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTCACTTTTCATCAACATCTAGTAACTGTAAAATCCCTACATTCC  450

seq1  AAATTTCCTCTTCCTTCTACTTGATTGTAGGTATTGCTTTGGGAGCCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCCTCTTCCTTCTACTTGATTGTAGGTATTGCTTTGGGAGCCTTA  500

seq1  GCTTTCTTTCTCATTAAGAGCATTCACCCCCACCTCCTCTTCCTCACCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTTTCTCATTAAGAGCATTCACCCCCACCTCCTCTTCCTCACCTC  550

seq1  CACCCCAGCTCAGTCGATGCCACTCATGTGTGTTTTATGTCCCACAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCAGCTCAGTCGATGCCACTCATGTGTGTTTTATGTCCCACAGAAA  600

seq1  CATGACTTCCCCCAGGAAGCCTTCAGTGACTTTTCTCAAGTTCTAGGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTTCCCCCAGGAAGCCTTCAGTGACTTTTCTCAAGTTCTAGGTCT  650

seq1  GATGAGATTGTTGGTTCATCAGATGAATCTCCTATTAATCAGCATCTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGATTGTTGGTTCATCAGATGAATCTCCTATTAATCAGCATCTACA  700

seq1  TGGGGTTACTGCTATACTCCCAAGCACAGAGAGAGAGAGAGAGAGAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTACTGCTATACTCCCAAGCACAGAGAGAGAGAGAGAGAGAGAGA  750

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAAACACATGGGTTGTTGTTTTGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAAACACATGGGTTGTTGTTTTGTTT  800

seq1  TGTTTTGTTTTACTTAAGAGTAAGGAAAGAAAGGGGGGAGTATTCTGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTACTTAAGAGTAAGGAAAGAAAGGGGGGAGTATTCTGAAG  850

seq1  ATGAAGATGGAAGGGG--TTCCTGGGGACTAGGGAGCAGATAAACTGGGA  898
      ||||||||||||||||  ||||||||||||||||||||||||||||||||
seq2  ATGAAGATGGAAGGGGGTTTCCTGGGGACTAGGGAGCAGATAAACTGGGA  900

seq1  TTGC-TTGCTT--GGTCTCTTTC-TTTTTAACCAAAGTTGCTGCTTAAGC  944
      |||| ||||||  | | |||||| ||||||||| |||||||||||| |||
seq2  TTGCTTTGCTTTGGTTTTCTTTCTTTTTTAACCGAAGTTGCTGCTT-AGC  949

seq1  AGTTGCTGCTTGCTGCTTTGGTTTGCTGGGCGGTTTAGCAAGCATACATC  994
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGTTGCTGCTTGCTGCTTTGGTTTGCTGGGCGG-TTAGCAAGCATACATC  998

seq1  TCAAGATATCTGGATACTCTGACCAATACAAAGCAAATTTGGTTACTTTC  1044
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCAAGATATCTGGATACTCTGA-CAATACAAAGCAAATTTGGTTACTTTC  1047

seq1  CTCTGAGTGGCCTTGGCTTGCACTTCTGACCAACACTCCCGCTTTGACTA  1094
      |||||||||| |||||||||||||||||| ||||||| ||||||||| ||
seq2  CTCTGAGTGG-CTTGGCTTGCACTTCTGA-CAACACTTCCGCTTTGA-TA  1094

seq1  TCATATGGTAGGCATATTCTATGCTTCGGGCCTTCATT-TATTCTTCTCT  1143
      |||||||||||||| |||| |||| |  |||| ||||| | |||||||| 
seq2  TCATATGGTAGGCAAATTC-ATGCCTTCGGCC-TCATTATCTTCTTCTC-  1141

seq1  CTCAATTCAACTCTCCCAGTGGCACTACATAGCCTTCTCTTTGTTC  1189
        ||||| |||| |||||  ||| |||||||| |||||| ||||||
seq2  --CAATT-AACT-TCCCA-AGGC-CTACATAG-CTTCTC-TTGTTC  1179

seq1: chr3_121118950_121119955
seq2: B6Ng01-028E10.g_65_1069 (reverse)

seq1  TTCCTTCTTTCTC-TCTCTCTCTCTTTCTTTTTTTTTGAAGATTTATTTA  49
      |||||||||  || |||||||||||||||| ||||||| |||||||||||
seq2  TTCCTTCTTCATCTTCTCTCTCTCTTTCTTCTTTTTTG-AGATTTATTTA  49

seq1  TTATTATAAATAAGTACACTGTAGCTGTCTTCAGACATACCAGAAGAGGG  99
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTATTATAAATAAGTACACTGTAGCTGTCTTCAGACATCCCAGAAGAGGG  99

seq1  TGTCAGATCTCATTAAGGGTAGTTGTGAGCCACCATGTGGTTGCTGGGAT  149
      |||||||||||||||||||||||||||||||||||||||||||||| || 
seq2  TGTCAGATCTCATTAAGGGTAGTTGTGAGCCACCATGTGGTTGCTGAGA-  148

seq1  TTGAACTCAGGACCTTCAGAAGAACAGTCAGTGCTCTTTCAAGGCCCAGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTCAGGACCTTCAGAAGAACAGTCAGTGCTCTTTCAAGGCCCAGA  198

seq1  ATTTGTCTTGTTTATAAGCTGACTTCTCAGAGCCCAGGACAGAACCTGAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCTTGTTTATAAGCTGACTTCTCAGAGCCCAGGACAGAACCTGAC  248

seq1  ACACAGAAGACACTCAGTGGTTATTTGTTGAATGAGTGAGTGAGCTAGAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAAGACACTCAGTGGTTATTTGTTGAATGAGTGAGTGAGCTAGAT  298

seq1  GAAAAGATGTGTGTGTTTTAAGAGAACTGTTCAATGACCTTTGTTCATCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGATGTGTGTGTTTTAAGAGAACTGTTCAATGACCTTTGTTCATCT  348

seq1  TTTTGGGGTTGGCCCTGATTGCAACAGGTTTTTTTTTTTTTTTTGGCTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGGTTGGCCCTGATTGCAACAGGTTTTTTTTTTTTTTTTGGCTCA  398

seq1  CGTTTGAAAGGGATAACAATTTTTTAAGTTGTATATTAACCAGACTTTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTGAAAGGGATAACAATTTTTTAAGTTGTATATTAACCAGACTTTTG  448

seq1  AATGGTTATGTAAGTGAAAAAGCAGTCTTCAAGAGGTAACACTGAATTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTATGTAAGTGAAAAAGCAGTCTTCAAGAGGTAACACTGAATTTA  498

seq1  ATTTAAATTTAAAAAGAGTATCTGGGCAAAGTTAATAGTCTTCTTGCTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATTTAAAAAGAGTATCTGGGCAAAGTTAATAGTCTTCTTGCTAG  548

seq1  TTTTCCAAAATGATAACAAAATACTGGAAGAAAATCAATTTACAAGGAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAAAATGATAACAAAATACTGGAAGAAAATCAATTTACAAGGAGG  598

seq1  GAGGGTTTGTCTTGGTTCTTGCTTTCAGAGATTTAAATCTGTCACGGTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTTGTCTTGGTTCTTGCTTTCAGAGATTTAAATCTGTCACGGTCA  648

seq1  AGTAGTTCATTGCTAGAGCAAGTAGATATTTCAGAGTCAGGAATATACGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTCATTGCTAGAGCAAGTAGATATTTCAGAGTCAGGAATATACGG  698

seq1  TAGAGCCAAAGCTGGTTCCTTACTTGACTGTGGCTAGGAAGCTAGGGAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCCAAAGCTGGTTCCTTACTTGACTGTGGCTAGGAAGCTAGGGAGA  748

seq1  GAGAGAAAGAGGCTTCAGGTCTCAGTGACCTTCCTCCCTCTAGGTAGTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAAGAGGCTTCAGGTCTCAGTGACCTTCCTCCCTCTAGGTAGTGT  798

seq1  CCCCTCAAAGTTCCACTTCCCTGTAATACCACAGGCCTTGGGGACTCACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCAAAGTTCCACTTCCCTGTAATACCACAGGCCTTGGGGACTCACA  848

seq1  ACTGGAAATAATGGAACAGTTTAATTGTCACACGTCTGCCTGGCCTTAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAATAATGGAACAGTTTAATTGTCACACGTCTGCCTGGCCTTAAG  898

seq1  AACCAGATGGTCAAAGCCTACAGAGGTCAAATAACTCATCTGCATAGCAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGATGGTCAAAGCCTACAGAGGTCAAATAACTCATCTGCATAGCAG  948

seq1  TCCACAGCTAAGCACCTTCACCCTCTAGGCTACTCTCTTAACCTCTGCCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGCTAAGCACCTTCACCCTCTAGGCTACTCTCTTAACCTCTGCCT  998

seq1  GGAATTC  1006
      |||||||
seq2  GGAATTC  1005