BAC Information

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BAC

Clone NameB6Ng01-028G11
Chromosome3 (Build37)
Map Location 132,716,179 - 132,843,187
singlet/doubletdoublet
Overlap geneGstcd, Ints12, 9130221D24Rik
Upstream geneDkk2, LOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt
Downstream genePpa2, E130014J05Rik, EG620205, LOC100039168
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028G11.bB6Ng01-028G11.g
ACCDH858892DH858893
length1,1581,143
definitionDH858892|Mus musculus domesticus DNA, BAC clone: B6Ng01-028G11, 5' end.DH858893|Mus musculus domesticus DNA, BAC clone: B6Ng01-028G11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,716,179 - 132,717,348)(132,842,036 - 132,843,187)
sequence
gaattctttattaatgagttcataacacactgcctagtgcagtaacaaat
gatccaaatctccttcactgttcagtagtacattgtcttagttgtagtca
ctgtacacttgtcttaatagaaataaaccagatgaacttgtataatcatg
tagatatttcctcatatcaaataccactttttaaacatctaatgtcatca
aatctaaacactggctgttaaaaacttttctgggaaataagacacaatag
tctccatttgtgaagacctacaaaaagggttctcgagggctatccctaga
agagagaagaacgtggaacaacactggaaagagttctaacacatccatct
acatcaggagaaaacacacacgtttatttttttactctttgatcacatac
cacatttaatacacctttaaaaaggaaaagaagaaaatctcatctcataa
tttataaacagaaaaataaaaacaaaaatacagaagatagaaaaactgag
ccatagcaaggtttacagattaaaggcccatacctttaatcatagcactc
ggcagaggcggaggcggaggcggaggcggaggcggaggcggaggcggagg
cggaggcggaggcggaggcggaggcagaggcggaggcagaggcagatgga
tctctgtgaattccaagccagcctcagctcacagaggttctaacctagcc
aaggctacacagtgagatcttgtctcaaaaaataaagttaaataaaataa
aatgagccatacactatgtgtatttaagctatgcagagtgctggagacac
tgaataactccccactgaatgaaaattgagtcaaaacagaaattaatttt
agaacttaatgaaaatgaaaatacaacatactcaaacttaagagacacca
tgaaaacagatctgtatcgaatgtcatgtacaaaacttcaacttcaagtg
gattgaggacttcataaaaccagacaccatgagtctgataagagaaaatg
gaaacatacttgaattcatgggaaaggaaaaccctaaataatccaagaac
taacaagtgaacaccaagaattatatgtaacacaataataatgcagtcga
taataaatggaagagttctcaaagaatgaaaaccaatgcgaaaaccttaa
aaatattt
gaattcattttatgattcacagaatccccaagggcccatggtgataggat
tgaaaccgggccaattgatgttttaatcctttctgtccttcaggaagaaa
tggaattaaaaactgagtttctgttgttcagaatttgttgcactgagcta
agattatagatagaatgtagtattcgattcttgctaacggattttattat
ctaaattagatatacaggatagtgaccttggcaggtaaaagtagaagtga
caacttgggggaaagtcagcagaaactgaaggagttcagaaatagcgaca
tacttgagagtgccatttgctgaccttcatgaagatggagaaccacaaag
tcccggtgctgggtctatcttaatttccatgtatgacttcatgcatggca
ccttgctttactctgtatgtcctcaagatgggtcatactttacagggaag
atggagaggcaaataaaagaaaggaattaaagcacttcaaactgacaaag
tcaagattgcacagcacaataaaataatacaggcagtgtatgaatcacat
ctaaacactaccctataaacaggaaaatgaggaaattaaaatgtcatacc
cccaaagatatctttcaaataaatagcaaccagtacatttaaaataagtc
acatgttatttctacctgacatagtaggtaaatctttaagataactagta
taataggtcaatataattttgaccagttgataataattattaaataatga
tatatatgttagctaacaaaagagccaatagctgttatgctcttccacat
attttatattatattaaatatacttcttactataggaaacagaaacccca
aacattcttagaggcgatgcaaaagagccacagaaatcttttcctcttaa
gtgaatgcttaatgaggtatattctaggagactctgggctaaagacccta
aaagccagtatagattagtatggtgtggtcatgctgatatttctgcaata
tttttctcagtgctaggaccaaatcaaggcttacaccacactgatatagg
cactggttgctgaactacaccctcagttgtaataaaccaaataagtagtg
gggtgacgcccgcactcctgcacttggcgaaggcaacagatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_132716179_132717348
seq2: B6Ng01-028G11.b_46_1203

seq1  GAATTCTTTATTAATGAGTTCATAACACACTGCCTAGTGCAGTAACAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATTAATGAGTTCATAACACACTGCCTAGTGCAGTAACAAAT  50

seq1  GATCCAAATCTCCTTCACTGTTCAGTAGTACATTGTCTTAGTTGTAGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAAATCTCCTTCACTGTTCAGTAGTACATTGTCTTAGTTGTAGTCA  100

seq1  CTGTACACTTGTCTTAATAGAAATAAACCAGATGAACTTGTATAATCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACACTTGTCTTAATAGAAATAAACCAGATGAACTTGTATAATCATG  150

seq1  TAGATATTTCCTCATATCAAATACCACTTTTTAAACATCTAATGTCATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATTTCCTCATATCAAATACCACTTTTTAAACATCTAATGTCATCA  200

seq1  AATCTAAACACTGGCTGTTAAAAACTTTTCTGGGAAATAAGACACAATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAACACTGGCTGTTAAAAACTTTTCTGGGAAATAAGACACAATAG  250

seq1  TCTCCATTTGTGAAGACCTACAAAAAGGGTTCTCGAGGGCTATCCCTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATTTGTGAAGACCTACAAAAAGGGTTCTCGAGGGCTATCCCTAGA  300

seq1  AGAGAGAAGAACGTGGAACAACACTGGAAAGAGTTCTAACACATCCATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAGAACGTGGAACAACACTGGAAAGAGTTCTAACACATCCATCT  350

seq1  ACATCAGGAGAAAACACACACGTTTATTTTTTTACTCTTTGATCACATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGGAGAAAACACACACGTTTATTTTTTTACTCTTTGATCACATAC  400

seq1  CACATTTAATACACCTTTAAAAAGGAAAAGAAGAAAATCTCATCTCATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTAATACACCTTTAAAAAGGAAAAGAAGAAAATCTCATCTCATAA  450

seq1  TTTATAAACAGAAAAATAAAAACAAAAATACAGAAGATAGAAAAACTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAACAGAAAAATAAAAACAAAAATACAGAAGATAGAAAAACTGAG  500

seq1  CCATAGCAAGGTTTACAGATTAAAGGCCCATACCTTTAATCATAGCACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGCAAGGTTTACAGATTAAAGGCCCATACCTTTAATCATAGCACTC  550

seq1  GGCAGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGAGG  600

seq1  CGGAGGCGGAGGCGGAGGCGGAGGCAGAGGCGGAGGCAGAGGCAGATGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGGCGGAGGCGGAGGCGGAGGCAGAGGCGGAGGCAGAGGCAGATGGA  650

seq1  TCTCTGTGAATTCCAAGCCAGCCTCAGCTCACAGAGGTTCTAACCTAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGAATTCCAAGCCAGCCTCAGCTCACAGAGGTTCTAACCTAGCC  700

seq1  AAGGCTACACAGTGAGATCTTGTCTCAAAAAATAAAGTTAAATAAAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTACACAGTGAGATCTTGTCTCAAAAAATAAAGTTAAATAAAATAA  750

seq1  AATGAGCCATACACTATGTGTATTTAAGCTATGCAGAGTGCTGGAGACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCCATACACTATGTGTATTTAAGCTATGCAGAGTGCTGGAGACAC  800

seq1  TGAATAACTCCCCACTGAATGAAAATTGAGTCAAAACAGAAATTAATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAACTCCCCACTGAATGAAAATTGAGTCAAAACAGAAATTAATTTT  850

seq1  AGAACTTAATGAAAATGAAAATACAACATACTCAAACTTAAGAGACACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTAATGAAAATGAAAATACAACATACTCAAACTTAAGAGACACCA  900

seq1  TGAAAACAGATCTGTATCGAATGTCATGTACAAAACTTCAACTTCAAGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACAGATCTGTATCGAATGTCATGTACAAAACTTCAACTTCAAGTG  950

seq1  GATTGAGGACTTCATAAAACCAGACACCATGAGTCTGATAAAGAGAAAAT  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GATTGAGGACTTCATAAAACCAGACACCATGAGTCTGAT-AAGAGAAAAT  999

seq1  GGAAACATACTTGAATTCAATGGGAAAGGAAAACCCTAAAATATACAAAG  1050
      |||||||||||||||||| |||||||||||||||||| |||||  | |||
seq2  GGAAACATACTTGAATTC-ATGGGAAAGGAAAACCCT-AAATAATCCAAG  1047

seq1  AACCTAAACAAAGTTGAACACCAAGAA-TATATGTAACACAATAATAAAT  1099
      |||   |||||   ||||||||||||| |||||||||||||||||| |||
seq2  AAC--TAACAA--GTGAACACCAAGAATTATATGTAACACAATAAT-AAT  1092

seq1  GCAGTCGATAATTAAATGG-AGAGTTCTCAAAAGATGAAACACAAATGGC  1148
      ||||||||||| ||||||| ||||||||||||  |||||| || ||||  
seq2  GCAGTCGATAA-TAAATGGAAGAGTTCTCAAAGAATGAAA-ACCAATG--  1138

seq1  CAGAAAAACTTTAAAAATATTT  1170
          ||||| ||||||||||||
seq2  --CGAAAACCTTAAAAATATTT  1158

seq1: chr3_132842036_132843187
seq2: B6Ng01-028G11.g_67_1209 (reverse)

seq1  AGATCTGTTTGCCTCTGCCAAGTGCCAGGA-TGCTGGCGTCACCCAACTA  49
      ||||||| ||||||  |||||||| ||||| ||| |||||||||| ||||
seq2  AGATCTG-TTGCCTTCGCCAAGTG-CAGGAGTGCGGGCGTCACCCCACTA  48

seq1  CTTATTTGTGTTTATTACAACTGAGGATGTAGTTCAGCAGCAAGGTGCTT  99
      |||||||| ||||||||||||||||| |||||||||||| | | |||| |
seq2  CTTATTTG-GTTTATTACAACTGAGGGTGTAGTTCAGCAACCA-GTGCCT  96

seq1  ATATCAGTGTGTGTG-AAGCCCTGAATTTGGTTCCTAGCACTGAGAAAAA  148
      ||||||||||| ||| ||||| || |||||| ||||||||||||||||||
seq2  ATATCAGTGTG-GTGTAAGCCTTG-ATTTGG-TCCTAGCACTGAGAAAAA  143

seq1  TATTGCAGAAATTATCAGCATGACCACACCAATTACTAATCTATACTGGC  198
      ||||||||||| |||||||||||||||||||  |||||||||||||||||
seq2  TATTGCAGAAA-TATCAGCATGACCACACCA--TACTAATCTATACTGGC  190

seq1  TTTTAGGGTCTTTAGCCCAGAGTCTCCTAGAATATACCTTCATTAAGCAT  248
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTTAGGGTCTTTAGCCCAGAGTCTCCTAGAATATACC-TCATTAAGCAT  239

seq1  TCACTTAAGAGGAAAAGATTTCTGTGGCTCTTTTGCATCGCCTCTAAGAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTAAGAGGAAAAGATTTCTGTGGCTCTTTTGCATCGCCTCTAAGAA  289

seq1  TGTTTGGGGTTTCTGTTTCCTATAGTAAGAAGTATATTTAATATAATATA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGGGTTTCTGTTTCCTATAGTAAGAAGTATATTTAATATAATATA  339

seq1  AAATATGTGGAAGAGCATAACAGCTATTGGCTCTTTTGTTAGCTAACATA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTGGAAGAGCATAACAGCTATTGGCTCTTTTGTTAGCTAACATA  389

seq1  TATATCATTATTTAATAATTATTATCAACTGGTCAAAATTATATTGACCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCATTATTTAATAATTATTATCAACTGGTCAAAATTATATTGACCT  439

seq1  ATTATACTAGTTATCTTAAAGATTTACCTACTATGTCAGGTAGAAATAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACTAGTTATCTTAAAGATTTACCTACTATGTCAGGTAGAAATAAC  489

seq1  ATGTGACTTATTTTAAATGTACTGGTTGCTATTTATTTGAAAGATATCTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACTTATTTTAAATGTACTGGTTGCTATTTATTTGAAAGATATCTT  539

seq1  TGGGGGTATGACATTTTAATTTCCTCATTTTCCTGTTTATAGGGTAGTGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTATGACATTTTAATTTCCTCATTTTCCTGTTTATAGGGTAGTGT  589

seq1  TTAGATGTGATTCATACACTGCCTGTATTATTTTATTGTGCTGTGCAATC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGTGATTCATACACTGCCTGTATTATTTTATTGTGCTGTGCAATC  639

seq1  TTGACTTTGTCAGTTTGAAGTGCTTTAATTCCTTTCTTTTATTTGCCTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTTGTCAGTTTGAAGTGCTTTAATTCCTTTCTTTTATTTGCCTCT  689

seq1  CCATCTTCCCTGTAAAGTATGACCCATCTTGAGGACATACAGAGTAAAGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTCCCTGTAAAGTATGACCCATCTTGAGGACATACAGAGTAAAGC  739

seq1  AAGGTGCCATGCATGAAGTCATACATGGAAATTAAGATAGACCCAGCACC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGCCATGCATGAAGTCATACATGGAAATTAAGATAGACCCAGCACC  789

seq1  GGGACTTTGTGGTTCTCCATCTTCATGAAGGTCAGCAAATGGCACTCTCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTTGTGGTTCTCCATCTTCATGAAGGTCAGCAAATGGCACTCTCA  839

seq1  AGTATGTCGCTATTTCTGAACTCCTTCAGTTTCTGCTGACTTTCCCCCAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTCGCTATTTCTGAACTCCTTCAGTTTCTGCTGACTTTCCCCCAA  889

seq1  GTTGTCACTTCTACTTTTACCTGCCAAGGTCACTATCCTGTATATCTAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCACTTCTACTTTTACCTGCCAAGGTCACTATCCTGTATATCTAAT  939

seq1  TTAGATAATAAAATCCGTTAGCAAGAATCGAATACTACATTCTATCTATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATAATAAAATCCGTTAGCAAGAATCGAATACTACATTCTATCTATA  989

seq1  ATCTTAGCTCAGTGCAACAAATTCTGAACAACAGAAACTCAGTTTTTAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGCTCAGTGCAACAAATTCTGAACAACAGAAACTCAGTTTTTAAT  1039

seq1  TCCATTTCTTCCTGAAGGACAGAAAGGATTAAAACATCAATTGGCCCGGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTCTTCCTGAAGGACAGAAAGGATTAAAACATCAATTGGCCCGGT  1089

seq1  TTCAATCCTATCACCATGGGCCCTTGGGGATTCTGTGAATCATAAAATGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCCTATCACCATGGGCCCTTGGGGATTCTGTGAATCATAAAATGA  1139

seq1  ATTC  1152
      ||||
seq2  ATTC  1143