BAC Information

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BAC

Clone NameB6Ng01-028I08
Chromosome3 (Build37)
Map Location 77,021,739 - 77,144,221
singlet/doubletdoublet
Overlap genenone
Upstream geneFstl5, LOC100041625, LOC100041635
Downstream geneDnmt3a-ps1, EG626461, LOC667526, LOC626479
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028I08.bB6Ng01-028I08.g
ACCDH858976DH858977
length1,168752
definitionDH858976|Mus musculus domesticus DNA, BAC clone: B6Ng01-028I08, 5' end.DH858977|Mus musculus domesticus DNA, BAC clone: B6Ng01-028I08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,021,739 - 77,022,924)(77,143,674 - 77,144,221)
sequence
gaattcaagaaagtaataaaaaagagggagaaggtgagaaattcgcattc
attatcattatatatgcatgtggattgcaaattgaatctatgtacagaat
aaggtagtttatatatagaatcatgtatgttcaataacacaacatattca
aaatcttgacagccatagaatagcatagaaatgcaaatgtacaaatatca
tgcaaaagtgaaagccatgattttgggaaaggactagttgtatatattaa
tataatctgctcatgcataacacacacacacacacacacacacacacaca
attcagatcttaacatttgtgtagaattgcaatgttacagttcttcccag
tgtagaaataataatgaatactttattttagttgttattttctaagaagc
atgaaaggaaatggcgatgagaggatcagtattgtcagaagttcttaagg
caattaaattacaaatgcatgcatgcatgtatgtatgtaaacatacatat
gtgtgtgtacctataaataatattttaattattcacagagagctgtaatc
agataacagtgtcaatcacacttaatgtatctaggtggaatccctgtcta
tattgtgtatccaaaatgcatatatatatatgcatttatacccctctgtg
agacctcccagaccatctaggctgcactgatgattctctcttgctgcata
gctccatcatcttatctctgtatctcttgttaaatcagaacattgaaact
acctgcttattctaccaaaatcagtgtttgtttgccacactgttatcaca
cttagattttggaagttggaggaataacctaatccattagtattttcata
aagttcttaaaactcatactttatatacatttgaaatgtatataaagaaa
atatctaataaaaaagaaatgtaaacaaataaataaccaataaaatgtaa
ttatcatatttttaaaagaaaggggatacatttgaaatgtaaataaatac
caataaaataatatagcaaaataaacctcatactttaatgagcaagtgat
tattatctatccatggtgcaacttcatgattagaaggaatctgtagaaga
agtacatggaatttgaagggtagactggcagtactgccattagctcttat
taagaccaaaggaaggag
gaattcaagaaaacagatatcaataaaccaaacaacccatttaaaaatgg
gatacagtcctgaacagagaattatcattagaggaatctcaaatgctgag
aaatatttttcaataaatgttcaacatccttagctgtcatgaaatgcaag
ccaaaactacactgaaattcaaattaacacctgttaaaaggctgaagttt
aaagtgtgtgacttaaaatttggatataaaacaatattgtattaatgtat
gttcttggagaagaaaaggaacataaatatggctcatcaatgctgtgttt
ttctgtcaagttaatgaggggtcaattatgatggctagttttatgtcaac
ttgccaaaagctagagttatctgaaagacagaaacctcaatgttgaaaat
gtctccatgttatctggctgtagggcattttctcaattagtcattaggaa
gttccagccaattgtgggaggtggtattgctgagctgatggtaccgggta
ctataggaaagcaaactaaccaaactattaggaacaagtcagtaaaaatc
actccatggcttctgcattagttcctgccttcaggttcctgacctgtttt
agtccctgtccttatttccttcaatgatgaacattgatatggaagtgtaa
gtaaaataaactcgttcctctccaatttttttggccatggtatttggtca
tagggtttcattaatagatatagatgtgtgtgtgtgtgtgtgtgtgtgtg
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_77021739_77022924
seq2: B6Ng01-028I08.b_43_1210

seq1  GAATTCAAGAAAGTAATAAAAAAGAGGGAGAAGGTGAGAAATTCGCATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAAAGTAATAAAAAAGAGGGAGAAGGTGAGAAATTCGCATTC  50

seq1  ATTATCATTATATATGCATGTGGATTGCAAATTGAATCTATGTACAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCATTATATATGCATGTGGATTGCAAATTGAATCTATGTACAGAAT  100

seq1  AAGGTAGTTTATATATAGAATCATGTATGTTCAATAACACAACATATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGTTTATATATAGAATCATGTATGTTCAATAACACAACATATTCA  150

seq1  AAATCTTGACAGCCATAGAATAGCATAGAAATGCAAATGTACAAATATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTGACAGCCATAGAATAGCATAGAAATGCAAATGTACAAATATCA  200

seq1  TGCAAAAGTGAAAGCCATGATTTTGGGAAAGGACTAGTTGTATATATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAAGTGAAAGCCATGATTTTGGGAAAGGACTAGTTGTATATATTAA  250

seq1  TATAATCTGCTCATGCATAACACACACACACACACACACACACACACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCTGCTCATGCATAACACACACACACACACACACACACACACACA  300

seq1  ATTCAGATCTTAACATTTGTGTAGAATTGCAATGTTACAGTTCTTCCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGATCTTAACATTTGTGTAGAATTGCAATGTTACAGTTCTTCCCAG  350

seq1  TGTAGAAATAATAATGAATACTTTATTTTAGTTGTTATTTTCTAAGAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAATAATAATGAATACTTTATTTTAGTTGTTATTTTCTAAGAAGC  400

seq1  ATGAAAGGAAATGGCGATGAGAGGATCAGTATTGTCAGAAGTTCTTAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGGAAATGGCGATGAGAGGATCAGTATTGTCAGAAGTTCTTAAGG  450

seq1  CAATTAAATTACAAATGCATGCATGCATGTATGTATGTAAACATACATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAATTACAAATGCATGCATGCATGTATGTATGTAAACATACATAT  500

seq1  GTGTGTGTACCTATAAATAATATTTTAATTATTCACAGAGAGCTGTAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTACCTATAAATAATATTTTAATTATTCACAGAGAGCTGTAATC  550

seq1  AGATAACAGTGTCAATCACACTTAATGTATCTAGGTGGAATCCCTGTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACAGTGTCAATCACACTTAATGTATCTAGGTGGAATCCCTGTCTA  600

seq1  TATTGTGTATCCAAAATGCATATATATATATGCATTTATACCCCTCTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGTATCCAAAATGCATATATATATATGCATTTATACCCCTCTGTG  650

seq1  AGACCTCCCAGACCATCTAGGCTGCACTGATGATTCTCTCTTGCTGCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCCCAGACCATCTAGGCTGCACTGATGATTCTCTCTTGCTGCATA  700

seq1  GCTCCATCATCTTATCTCTGTATCTCTTGTTAAATCAGAACATTGAAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCATCATCTTATCTCTGTATCTCTTGTTAAATCAGAACATTGAAACT  750

seq1  ACCTGCTTATTCTACCAAAATCAGTGTTTGTTTGCCACACTGTTATCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTTATTCTACCAAAATCAGTGTTTGTTTGCCACACTGTTATCACA  800

seq1  CTTAGATTTTGGAAGTTGGAGGAATAACCTAATCCATTAGTATTTTCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATTTTGGAAGTTGGAGGAATAACCTAATCCATTAGTATTTTCATA  850

seq1  AAGTTCTTAAAACTCATACTTTATATACATTTGAAATGTATATAAAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTTAAAACTCATACTTTATATACATTTGAAATGTATATAAAGAAA  900

seq1  ATATCTAATAAAAAAGAAATGTAAACAAATAAAATAACCAATAAAAATGT  950
      |||||||||||||||||||||||||||||| ||||||||||| |||||||
seq2  ATATCTAATAAAAAAGAAATGTAAACAAAT-AAATAACCAAT-AAAATGT  948

seq1  AATTATCATATTTTTAAAAAGAAAGGGGAATAACATTTGAAATGTAAATA  1000
      ||||||||||||||| |||||||||||||   ||||||||||||||||||
seq2  AATTATCATATTTTT-AAAAGAAAGGGGA--TACATTTGAAATGTAAATA  995

seq1  AAATAACCAATAAAAATAATATAGCAAAATAAAACCTCATACTTTAATGA  1050
      ||   |||||| |||||||||||||||||| |||||||||||||||||||
seq2  AA--TACCAAT-AAAATAATATAGCAAAAT-AAACCTCATACTTTAATGA  1041

seq1  GCAAGTGATTAATTTATCTATCACAT-GTGCAAACTTCATGATTAGAAAG  1099
      |||||||||||  ||||||||| ||| |||| |||||||||||||||| |
seq2  GCAAGTGATTA--TTATCTATC-CATGGTGC-AACTTCATGATTAGAAGG  1087

seq1  AATACTGTAAGAGAAGTACATGGATATTGAAGGGTAGAACTGGCAAGTAC  1149
      ||| |||||  |||||||||||||  ||||||||||| |||||| |||| 
seq2  AAT-CTGTAGAAGAAGTACATGGAATTTGAAGGGTAG-ACTGGC-AGTA-  1133

seq1  CTGCCAGTAAAGGCTCTTATTAAAGAACCAA--AAGGAG  1186
      |||||| ||   ||||||||| |||| | ||  ||||||
seq2  CTGCCATTA---GCTCTTATT-AAGACCAAAGGAAGGAG  1168

seq1: chr3_77143674_77144221
seq2: B6Ng01-028I08.g_270_817 (reverse)

seq1  CACACACACACACACACACACACACACATCTATATCTATTAATGAAACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACATCTATATCTATTAATGAAACCC  50

seq1  TATGACCAAATACCATGGCCAAAAAAATTGGAGAGGAACGAGTTTATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACCAAATACCATGGCCAAAAAAATTGGAGAGGAACGAGTTTATTTT  100

seq1  ACTTACACTTCCATATCAATGTTCATCATTGAAGGAAATAAGGACAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACACTTCCATATCAATGTTCATCATTGAAGGAAATAAGGACAGGGA  150

seq1  CTAAAACAGGTCAGGAACCTGAAGGCAGGAACTAATGCAGAAGCCATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACAGGTCAGGAACCTGAAGGCAGGAACTAATGCAGAAGCCATGGA  200

seq1  GTGATTTTTACTGACTTGTTCCTAATAGTTTGGTTAGTTTGCTTTCCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTTTACTGACTTGTTCCTAATAGTTTGGTTAGTTTGCTTTCCTAT  250

seq1  AGTACCCGGTACCATCAGCTCAGCAATACCACCTCCCACAATTGGCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCCGGTACCATCAGCTCAGCAATACCACCTCCCACAATTGGCTGGA  300

seq1  ACTTCCTAATGACTAATTGAGAAAATGCCCTACAGCCAGATAACATGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTAATGACTAATTGAGAAAATGCCCTACAGCCAGATAACATGGAG  350

seq1  ACATTTTCAACATTGAGGTTTCTGTCTTTCAGATAACTCTAGCTTTTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCAACATTGAGGTTTCTGTCTTTCAGATAACTCTAGCTTTTGGC  400

seq1  AAGTTGACATAAAACTAGCCATCATAATTGACCCCTCATTAACTTGACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGACATAAAACTAGCCATCATAATTGACCCCTCATTAACTTGACAG  450

seq1  AAAAACACAGCATTGATGAGCCATATTTATGTTCCTTTTCTTCTCCAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACACAGCATTGATGAGCCATATTTATGTTCCTTTTCTTCTCCAAGA  500

seq1  ACATACATTAATACAATATTGTTTTATATCCAAATTTTAAGTCACACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATTAATACAATATTGTTTTATATCCAAATTTTAAGTCACACA  548