BAC Information

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BAC

Clone NameB6Ng01-028J03
Chromosome3 (Build37)
Map Location 147,196,961 - 147,342,227
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7, Ppia-ps3_1528.1
Downstream geneLOC100040354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028J03.bB6Ng01-028J03.g
ACCDH859013DH859014
length1,0631,122
definitionDH859013|Mus musculus domesticus DNA, BAC clone: B6Ng01-028J03, 5' end.DH859014|Mus musculus domesticus DNA, BAC clone: B6Ng01-028J03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,341,158 - 147,342,227)(147,196,961 - 147,198,097)
sequence
gaattcagtaaaccttaaaaatgttaactctgtttttagtccaaatcata
tttactctaagttgcatggttccaaattgctaaaaagagctcggaagaga
agagaccaatcctagagcaagcagcctgacttgaaggattgtatttatga
ccgaaacttgaaaagaatccgtgtgtaaggcaactgcaactgctaagatg
tgtcaaagactccattcaacagctttaaagacatagttatgatgcgagga
ctgacatccactttagaaaattaaatgaatattaaaaaagttcaggaggc
ctgcatgtgaataattcaattaataagttctctttttccaggaatgaaaa
taaaacacatttttgtaataatgaatattaacatcaatttccttaaaaat
tgtccttatgtgactttcttcattttttttcaataaaaaactgttaccat
tccgtattatctggtttattggctaaaataacactgtttttcctgtctaa
tcaaagttcatggagatctccactaatgagattaaattgagaaagacttt
gaccctttacatagatgtttcaagtcctgaagttatatattaatgtatac
tatacgatgaagttaataggtgaaaattgtatagcattgatgtaaaatat
taaaatgcaaattagaatgattactactaactttttacagcatgggaata
aaaacagatgatcacacaaattatttcagctttcagggagaaaataagtt
tgatatccatggtacagcggccttatgcaatcatagcctctacatcttca
gattcaaacatgctaaaataagtgaatactgaccatagatagacttttat
gttgccattatgttaagagtggtgttttgcagaatccttgctctgctcca
gggacttcatttgaatgggaatggtgaggggatgaagaaatgacagacag
acacacagaaagcctaggtcttttttttttttttttttgataaagaaaca
acagcactacagaactaaacgtggttattataaaggttgaccgagagatg
gatgggctattgc
gaattcatttatattctcagggaagcttccagtttttcattatcaaggtg
ggtggatatgatcttctaatttcagcagccaaaaggaagaaaaagatgac
aataatgagtatctacaatgaaaatattcaaagttagttccatattatta
gcaccacagaccatgagccatagatcaatagtcccaagaagagcacagtg
gttatctgagtaggacagagaaaaaggtcgttaaagaatctatgagcatt
aataccaaatgagtgcccagaggacgggtgtgttgccatagggaaggtcc
aaagcatagacatgaaggaagatgactgaacaaacagaagttggtgtgga
atttatttgctttagaatagagatctcggaggaaatgatcactgcaaata
gtagatgtttaaaggagaaagagccagaggatcattgcacttagtagata
gattttagtcattggctgggcatagatattgtcaccttgagttccataat
gacgactgcacccacacagatcgggagcaagagagttggggattaattac
tggtcacctatttccaggtgtgtttgataaaaaaacattttgatgcatgt
ttttaatttcagaatcaaccataatatgcaaaacctatttcttagggaaa
ggtaaatacaaaagctgtggggaacattttattctggttatatggatagg
aatatcaattatgttaaattaaatgtatcttcccttttccaacatgaaaa
tactttttagagaattatcattaaaataaactgaaaagagaagatattcc
ttcagatactatacttatcaaagaagttgacaggcttctaaaagctttta
ttttaaattatataattggttccaataattgaattacttttaaaagttta
tgggaaactcttttatagatttcctggcaggaggggtaatatggggctaa
aatccaatgtactaggagaattggtattgaaacagaagtttgtagtttca
ttgtacaaacatggctgtagacattacgccaatggaacccagtgagaact
gacttcattgttaactaggattaagaaatcatgagactaaacagtaagga
gcatctgggaattcctgcaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_147341158_147342227
seq2: B6Ng01-028J03.b_45_1107 (reverse)

seq1  GCAATAACCCCATCCATCTCTCTGTTCAACCCTTTATAATAAACACGTTA  50
      ||||| | |||||||||||||| | |||| |||||||||||| |||||| 
seq2  GCAAT-AGCCCATCCATCTCTC-GGTCAA-CCTTTATAATAACCACGTTT  47

seq1  AGTTTCTGTAGTGCTGTGGTTTCTCTATCAAAAAAAAAAAAAAAAAAAAG  100
      || |||||||||||||| |||||| ||||  |||||||||||||||||||
seq2  AG-TTCTGTAGTGCTGTTGTTTCTTTATC--AAAAAAAAAAAAAAAAAAG  94

seq1  ACCTAGGCTTTCTTGTGTGTCTGTCTGTCATTTCTTCATCCCCTCACCAT  150
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGCTTTC-TGTGTGTCTGTCTGTCATTTCTTCATCCCCTCACCAT  143

seq1  TCCCATTCAAATGAAGTCCCTGGAGCAGAGCAAGGATTCTGCAAAACACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTCAAATGAAGTCCCTGGAGCAGAGCAAGGATTCTGCAAAACACC  193

seq1  ACTCTTAACATAATGGCAACATAAAAGTCTATCTATGGTCAGTATTCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTAACATAATGGCAACATAAAAGTCTATCTATGGTCAGTATTCACT  243

seq1  TATTTTAGCATGTTTGAATCTGAAGATGTAGAGGCTATGATTGCATAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAGCATGTTTGAATCTGAAGATGTAGAGGCTATGATTGCATAAGG  293

seq1  CCGCTGTACCATGGATATCAAACTTATTTTCTCCCTGAAAGCTGAAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTGTACCATGGATATCAAACTTATTTTCTCCCTGAAAGCTGAAATAA  343

seq1  TTTGTGTGATCATCTGTTTTTATTCCCATGCTGTAAAAAGTTAGTAGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGATCATCTGTTTTTATTCCCATGCTGTAAAAAGTTAGTAGTAA  393

seq1  TCATTCTAATTTGCATTTTAATATTTTACATCAATGCTATACAATTTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTAATTTGCATTTTAATATTTTACATCAATGCTATACAATTTTCA  443

seq1  CCTATTAACTTCATCGTATAGTATACATTAATATATAACTTCAGGACTTG  500
      |||||||||||||                 ||||||||||||||||||||
seq2  CCTATTAACTTCANNNNNNNNNNNNNNNNNATATATAACTTCAGGACTTG  493

seq1  AAACATCTATGTAAAGGGTCAAAGTCTTTCTCAATTTAATCTCATTAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCTATGTAAAGGGTCAAAGTCTTTCTCAATTTAATCTCATTAGTG  543

seq1  GAGATCTCCATGAACTTTGATTAGACAGGAAAAACAGTGTTATTTTAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTCCATGAACTTTGATTAGACAGGAAAAACAGTGTTATTTTAGCC  593

seq1  AATAAACCAGATAATACGGAATGGTAACAGTTTTTTATTGAAAAAAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCAGATAATACGGAATGGTAACAGTTTTTTATTGAAAAAAAATG  643

seq1  AAGAAAGTCACATAAGGACAATTTTTAAGGAAATTGATGTTAATATTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTCACATAAGGACAATTTTTAAGGAAATTGATGTTAATATTCAT  693

seq1  TATTACAAAAATGTGTTTTATTTTCATTCCTGGAAAAAGAGAACTTATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACAAAAATGTGTTTTATTTTCATTCCTGGAAAAAGAGAACTTATTA  743

seq1  ATTGAATTATTCACATGCAGGCCTCCTGAACTTTTTTAATATTCATTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATTATTCACATGCAGGCCTCCTGAACTTTTTTAATATTCATTTAA  793

seq1  TTTTCTAAAGTGGATGTCAGTCCTCGCATCATAACTATGTCTTTAAAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAAAGTGGATGTCAGTCCTCGCATCATAACTATGTCTTTAAAGCT  843

seq1  GTTGAATGGAGTCTTTGACACATCTTAGCAGTTGCAGTTGCCTTACACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATGGAGTCTTTGACACATCTTAGCAGTTGCAGTTGCCTTACACAC  893

seq1  GGATTCTTTTCAAGTTTCGGTCATAAATACAATCCTTCAAGTCAGGCTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTTTTCAAGTTTCGGTCATAAATACAATCCTTCAAGTCAGGCTGC  943

seq1  TTGCTCTAGGATTGGTCTCTTCTCTTCCGAGCTCTTTTTAGCAATTTGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTAGGATTGGTCTCTTCTCTTCCGAGCTCTTTTTAGCAATTTGGA  993

seq1  ACCATGCAACTTAGAGTAAATATGATTTGGACTAAAAACAGAGTTAACAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCAACTTAGAGTAAATATGATTTGGACTAAAAACAGAGTTAACAT  1043

seq1  TTTTAAGGTTTACTGAATTC  1070
      ||||||||||||||||||||
seq2  TTTTAAGGTTTACTGAATTC  1063

seq1: chr3_147196961_147198097
seq2: B6Ng01-028J03.g_64_1185

seq1  GAATTCATTTATATTCTCAGGGAAGCTTCCAGTTTTTCATTATCAAGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTATATTCTCAGGGAAGCTTCCAGTTTTTCATTATCAAGGTG  50

seq1  GGTGGATATGATCTTCTAATTTCAGCAGCCAAAAGGAAGAAAAAGATGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATATGATCTTCTAATTTCAGCAGCCAAAAGGAAGAAAAAGATGAC  100

seq1  AATAATGAGTATCTACAATGAAAATATTCAAAGTTAGTTCCATATTATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGAGTATCTACAATGAAAATATTCAAAGTTAGTTCCATATTATTA  150

seq1  GCACCACAGACCATGAGCCATAGATCAATAGTCCCAAGAAGAGCACAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACAGACCATGAGCCATAGATCAATAGTCCCAAGAAGAGCACAGTG  200

seq1  GTTATCTGAGTAGGACAGAGAAAAAGGTCGTTAAAGAATCTATGAGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCTGAGTAGGACAGAGAAAAAGGTCGTTAAAGAATCTATGAGCATT  250

seq1  AATACCAAATGAGTGCCCAGAGGACGGGTGTGTTGCCATAGGGAAGGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAAATGAGTGCCCAGAGGACGGGTGTGTTGCCATAGGGAAGGTCC  300

seq1  AAAGCATAGACATGAAGGAAGATGACTGAACAAACAGAAGTTGGTGTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATAGACATGAAGGAAGATGACTGAACAAACAGAAGTTGGTGTGGA  350

seq1  ATTTATTTGCTTTAGAATAGAGATCTCGGAGGAAATGATCACTGCAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTGCTTTAGAATAGAGATCTCGGAGGAAATGATCACTGCAAATA  400

seq1  GTAGATGTTTAAAGGAGAAAGAGCCAGAGGATCATTGCACTTAGTAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGTTTAAAGGAGAAAGAGCCAGAGGATCATTGCACTTAGTAGATA  450

seq1  GATTTTAGTCATTGGCTGGGCATAGATATTGTCACCTTGAGTTCCATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAGTCATTGGCTGGGCATAGATATTGTCACCTTGAGTTCCATAAT  500

seq1  GACGACTGCACCCACACAGATCGGGAGCAAGAGAGTTGGGGATTAATTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGACTGCACCCACACAGATCGGGAGCAAGAGAGTTGGGGATTAATTAC  550

seq1  TGGTCACCTATTTCCAGGTGTGTTTGATAAAAAAACATTTTGATGCATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACCTATTTCCAGGTGTGTTTGATAAAAAAACATTTTGATGCATGT  600

seq1  TTTTAATTTCAGAATCAACCATAATATGCAAAACCTATTTCTTAGGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTCAGAATCAACCATAATATGCAAAACCTATTTCTTAGGGAAA  650

seq1  GGTAAATACAAAAGCTGTGGGGAACATTTTATTCTGGTTATATGGATAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATACAAAAGCTGTGGGGAACATTTTATTCTGGTTATATGGATAGG  700

seq1  AATATCAATTATGTTAAATTAAATGTATCTTCCCTTTTCCAACATGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAATTATGTTAAATTAAATGTATCTTCCCTTTTCCAACATGAAAA  750

seq1  TACTTTTTAGAGAATTATCATTAAAATAAACTGAAAAGAGAAGATATTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTAGAGAATTATCATTAAAATAAACTGAAAAGAGAAGATATTCC  800

seq1  TTCAGATACTATACTTATCAAAGAAGTTGACAGGCTTCTAAAAGCTTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATACTATACTTATCAAAGAAGTTGACAGGCTTCTAAAAGCTTTTA  850

seq1  TTTTAAATTATATAATTGGTTCCAATAATTGAATTACTTTTAAAAGTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATTATATAATTGGTTCCAATAATTGAATTACTTTTAAAAGTTTA  900

seq1  TGGGAAACTCTTTTATAGATTTCCTGGCAGGGAGGGGGTAATATGGGGCT  950
      |||||||||||||||||||||||||||||||   ||||||||||||||||
seq2  TGGGAAACTCTTTTATAGATTTCCTGGCAGG--AGGGGTAATATGGGGCT  948

seq1  AAAATCCAATGTACTAGGAGAATTGGTATTGAAACAGGAAGTGTGTAGTT  1000
      |||||||||||||||||||||||||||||||||||| ||||| |||||||
seq2  AAAATCCAATGTACTAGGAGAATTGGTATTGAAACA-GAAGTTTGTAGTT  997

seq1  TCATTGTACAAACATGGCTGTAGACATTACGCCAATGGAACCCCAGTGAG  1050
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCATTGTACAAACATGGCTGTAGACATTACGCCAATGGAA-CCCAGTGAG  1046

seq1  -ACTGACTTCATTGTTAACTAGGAATTAAGAGACATCAATGAGACAGAAA  1099
       |||||||||||||||||||||| ||||  ||| ||| |||||||   ||
seq2  AACTGACTTCATTGTTAACTAGG-ATTA--AGAAATC-ATGAGAC--TAA  1090

seq1  ACAGTAAAGGAAGCAAATCCTGGGAATTCACTGCAGGT  1137
      |||||||  | ||||    |||||||||| ||||||||
seq2  ACAGTAA--GGAGCA---TCTGGGAATTC-CTGCAGGT  1122