BAC Information

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BAC

Clone NameB6Ng01-028J15
Chromosome4 (Build37)3 (Build37)
Map Location 128,761,753 - 128,762,849137,623,477 - 137,623,564
singlet/doubletsingletsinglet
Overlap geneIbrdc3
Upstream gene4930465A12Rik, Hmgb4, 4930546G22Rik, Zscan20, Tlr12, Phc2, A3galt2, BC039093, LOC667354, Trim62, Adc, Ak2
Downstream geneTmem54, Hpca, Fndc5, S100pbp, Yars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1, LOC100040532, Ptp4a2, LOC622469, LOC622480, 1700003M07Rik, Bai2, Col16a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028J15.bB6Ng01-028J15.g
ACCDH859037DH859038
length1,08574
definitionDH859037|Mus musculus domesticus DNA, BAC clone: B6Ng01-028J15, 5' end.DH859038|Mus musculus domesticus DNA, BAC clone: B6Ng01-028J15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(128,761,753 - 128,762,849)(137,623,477 - 137,623,564)
sequence
gaattctgtcataactgacctcatgtcactgtccttggcttgggtagtcc
tgcagagccaagtgtttattggaagagtagtctatctgtctgtgagaggc
ctgcggttttctaaccccagggaagaagggttttactccctccaactgca
gtggagtcgcttgtagagcagcttctcctcccatacaggaagccaaggca
ggcttgctgtagactggagtcaggctgagtctgcaatagcgaggagaccg
agttgcaccttttttgccctcgagaggcagttctgcagttttcctgtcag
agccagattcatactcaccacactctatagtcagtgtttaggggcagagt
ctgtggagagggcttggtgaccccgcagggttacagttaggaagcaactg
gggctgaaacccagatccctgtgcatactgtgtagctgctctacccctga
gccgcatcccagcctaggagccaagcctatgggagcaagagctgtttctg
caagatcccaggcaatagctagcatagatgttggctgtgctctcaggtac
acgctccctgccagcctagttagagagaggctgagaaatgcggcctccag
ggaaagcagcgggcaggcgtgccgcccaagtctcccttgagcttacacgg
ttagcaggagtgagctgttagtaccagaaatctgggcactgtcaagaata
aggtccttgggctggggggagcggggggtggttcagcagaggcatgcttg
gctaacgtggacaaggccctgggttcagtccctggtaccataaagtaata
atagtaatgataataaataatgtctttaggaatgaaagctcatacaaaga
actgcagagcaagagattcaatgtcagaattccagatctgactgtcagtt
actttcctatgccccatttgcccaatccttaaaccagaatcaggcagctg
ttgatcgatcgccttagcactgggcccaggggaagagcgaatgcatcttt
gtctgaggacagctgcctttctgtttgtattccagtttactgcttgcctt
atgaataaagatggggcgtcaacagcaccactgtg
caggacagccagggctagacagagtaaccctgtctcaaaaacacagaaac
aaacaaacaaacaaacaaacaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_128761753_128762849
seq2: B6Ng01-028J15.b_43_1127

seq1  GAATTCTGTCATAACTGACCTCATGTCACTGTCCTTGGCTTGGGTAGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCATAACTGACCTCATGTCACTGTCCTTGGCTTGGGTAGTCC  50

seq1  TGCAGAGCCAAGTGTTTATTGGAAGAGTAGTCTATCTGTCTGTGAGAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGCCAAGTGTTTATTGGAAGAGTAGTCTATCTGTCTGTGAGAGGC  100

seq1  CTGCGGTTTTCTAACCCCAGGGAAGAAGGGTTTTACTCCCTCCAACTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGGTTTTCTAACCCCAGGGAAGAAGGGTTTTACTCCCTCCAACTGCA  150

seq1  GTGGAGTCGCTTGTAGAGCAGCTTCTCCTCCCATACAGGAAGCCAAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTCGCTTGTAGAGCAGCTTCTCCTCCCATACAGGAAGCCAAGGCA  200

seq1  GGCTTGCTGTAGACTGGAGTCAGGCTGAGTCTGCAATAGCGAGGAGACCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGCTGTAGACTGGAGTCAGGCTGAGTCTGCAATAGCGAGGAGACCG  250

seq1  AGTTGCACCTTTTTTGCCCTCGAGAGGCAGTTCTGCAGTTTTCCTGTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCACCTTTTTTGCCCTCGAGAGGCAGTTCTGCAGTTTTCCTGTCAG  300

seq1  AGCCAGATTCATACTCACCACACTCTATAGTCAGTGTTTAGGGGCAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGATTCATACTCACCACACTCTATAGTCAGTGTTTAGGGGCAGAGT  350

seq1  CTGTGGAGAGGGCTTGGTGACCCCGCAGGGTTACAGTTAGGAAGCAACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAGAGGGCTTGGTGACCCCGCAGGGTTACAGTTAGGAAGCAACTG  400

seq1  GGGCTGAAACCCAGATCCCTGTGCATACTGTGTAGCTGCTCTACCCCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAAACCCAGATCCCTGTGCATACTGTGTAGCTGCTCTACCCCTGA  450

seq1  GCCGCATCCCAGCCTAGGAGCCAAGCCTATGGGAGCAAGAGCTGTTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCATCCCAGCCTAGGAGCCAAGCCTATGGGAGCAAGAGCTGTTTCTG  500

seq1  CAAGATCCCAGGCAATAGCTAGCATAGATGTTGGCTGTGCTCTCAGGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCCCAGGCAATAGCTAGCATAGATGTTGGCTGTGCTCTCAGGTAC  550

seq1  ACGCTCCCTGCCAGCCTAGTTAGAGAGAGGCTGAGAAATGCGGCCTCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTCCCTGCCAGCCTAGTTAGAGAGAGGCTGAGAAATGCGGCCTCCAG  600

seq1  GGAAAGCAGCGGGCAGGCGTGCCGCCCAAGTCTCCCTTGAGCTTACACGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCAGCGGGCAGGCGTGCCGCCCAAGTCTCCCTTGAGCTTACACGG  650

seq1  TTAGCAGGAGTGAGCTGTTAGTACCAGAAATCTGGGCACTGTCAAGAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGGAGTGAGCTGTTAGTACCAGAAATCTGGGCACTGTCAAGAATA  700

seq1  AGGTCCTTGGGCTGGGGGGAGCGGGGGGTGGTTCAGCAGAGGCATGCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTTGGGCTGGGGGGAGCGGGGGGTGGTTCAGCAGAGGCATGCTTG  750

seq1  GCTAACGTGGACAAGGCCCTGGGTTCAGTCCCTGGTACCATAAAGTAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACGTGGACAAGGCCCTGGGTTCAGTCCCTGGTACCATAAAGTAATA  800

seq1  ATAGTAATGATAATAAATAATGTCTTTAGGAATGAAAGCTCATACAAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAATGATAATAAATAATGTCTTTAGGAATGAAAGCTCATACAAAGA  850

seq1  ACTGCAGAGCAAGAGATTCAATGTCAGAATTCCAGATCTGACTGTCAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGAGCAAGAGATTCAATGTCAGAATTCCAGATCTGACTGTCAGTT  900

seq1  ACTTTCCTATGCCCCCATTTTGCCCAATCCTTAAACCAGAATCAGGCAGC  950
      |||||||||||||||   ||||||||||||||||||||||||||||||||
seq2  ACTTTCCTATGCCCC--ATTTGCCCAATCCTTAAACCAGAATCAGGCAGC  948

seq1  TTGTTGATCGATCGCCTTAGCACTGGGCCCAGGGGAAGAGCCGAATGCAT  1000
       ||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  -TGTTGATCGATCGCCTTAGCACTGGGCCCAGGGGAAGAG-CGAATGCAT  996

seq1  CTTTGTCTGAGGACCAGCTGCCTTTCTGTTTGTATTCACAGGTTTACCTG  1050
      ||||||||||||| ||||||||||||||||||||||| || ||||| |||
seq2  CTTTGTCTGAGGA-CAGCTGCCTTTCTGTTTGTATTC-CA-GTTTA-CTG  1042

seq1  C-TGCCTTATGCAGTAAAGGATGGGGCGTCCAGACAGCAGCCACTGTG  1097
      | ||||||||| | |||| |||||||||||   |||||| ||||||||
seq2  CTTGCCTTATG-AATAAA-GATGGGGCGTC--AACAGCA-CCACTGTG  1085

seq1: chr3_137623477_137623564
seq2: B6Ng01-028J15.g_68_144 (reverse)

seq1  TTTTGTTTGTTTGTTTTGGGGTTTTTTTTTGTTTTTGTTTTTGTTTTCGG  50
      |||||||||||||||      | ||| ||||||| ||| ||| |     |
seq2  TTTTGTTTGTTTGTT------TGTTTGTTTGTTTCTGTGTTTTT-----G  39

seq1  AGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAA  88
      |||||||||| |||||| ||||||||||||||||||||
seq2  AGACAGGGTTACTCTGTCTAGCCCTGGCTGTCCTGGAA  77