BAC Information

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BAC

Clone NameB6Ng01-029C02
Chromosome3 (Build37)2 (Build37)
Map Location 41,059,107 - 41,059,73640,152,648 - 40,153,670
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029C02.bB6Ng01-029C02.g
ACCDH859417DH859418
length6551,008
definitionDH859417|Mus musculus domesticus DNA, BAC clone: B6Ng01-029C02, 5' end.DH859418|Mus musculus domesticus DNA, BAC clone: B6Ng01-029C02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,107 - 41,059,736)(40,152,648 - 40,153,670)
sequence
gattctttgtttatctctgtgccccatttttaatggggttatttggtttt
ctggaggccatcttcttgagtactttacatatatattggatcttagtccc
ctatttgatttaggattggtaaagatcctttcccaatccgttggtggcct
ttttgtcttattgacagtgtcttttgccttaaagaaggtttgcaatttca
tgaggtcccatttgtcaattctggctcttacagcaaaagccactgctgtt
ctattcaagaatttttcctctgtgcccatatcttcgaggcttttccccac
tttcacctctatacgtttcagtgtctctggttttatgtggagttccatga
tccacttacacttgaacttagtacaaggagataagaatggatcaattcgc
aatcttctacatgataaccgccagttgtgccagcacaatttgttgaaaat
gctgtctttttcccactggatggttttagctcccttgtcaaagatcaagt
gaccgtaggtgtgtgggttcatttctgggtcttcaattctatttcattgg
tctacttgtctgtcactataccagtaccatgcagcttttatgacacttgc
tctgtagtacagcttaaggtcaggcatggtgattccaccagagattcttt
tatcc
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatagaaacacacagataatgaacctggagtagtcaaaatgaaggaact
gctagagttattactagccctgagtttaagttatgctaaggaactatagc
aataaaaccagcatggtattgacataaaaacacatgtattgatcaatgaa
atagcactgaagacttatcacctgaactttgctaaactaccctgcatctt
atggttgaaataattcatcttggtataacatttgtatatttttaatacaa
atatattatcaaatccatcaatcattaaaataacagcattatatacttat
gttattattgaagttttgttttaatatataaatattattacaattattcc
tattgtaattcctttttatctgtctactacgagaaacgaaaacaaatatt
gtaaagaattgtcagtttttccagcatgatttagtatgtaccatcatttg
aaagggaagtacctgttctatcatctgaaacagtcaatatactctcttat
caatcagtctttcaatgctttgcatttcagtcacgtgttttcatgttcct
ccacaataaactgaatatgggggtttgtgtagtcacaagggactcttcca
gatcttgattttactgacttgaaatgccaccctaaacctcatttctatgt
ttgccttctgtcccccctatgcttttatctttatcctccccctcctcttc
cttctcttcttctcctttgtttgtttggtatttgtttgtatgttatttta
tctttttttctagatcgggtgtggtgtgtagcattggctgttctagaatt
ttctctaggagactaggctgccctaataacaaatggaatgatctagacgt
ccctcttcttctttgcttggatgaaatagaatatgctctattgcatcaag
gtttcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059107_41059736
seq2: B6Ng01-029C02.b_39_670 (reverse)

seq1  ATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAAC  50
      ||||||||||||||||| ||||| ||||||||||||| ||| |||||| |
seq2  ATCACCATGCCTGACCTTAAGCTGTACTACAGAGCAAGTGTCATAAAAGC  50

seq1  TGCATGGTACTGGTATAGTGACAGACAAGCAGACCAATGGAATAGAATTG  100
      ||||||||||||||||||||||||||||| ||||||||| ||||||||||
seq2  TGCATGGTACTGGTATAGTGACAGACAAGTAGACCAATGAAATAGAATTG  100

seq1  AAGACTCAGAAACGAATCCACACACCTATGGTCACTTGATCTTCGACAAG  150
      ||||| |||||| ||| ||||||||||| |||||||||||||| ||||||
seq2  AAGACCCAGAAATGAACCCACACACCTACGGTCACTTGATCTTTGACAAG  150

seq1  GGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTG  200
      ||||||||||||||||||||| |||||||||||||||||||||||| |||
seq2  GGAGCTAAAACCATCCAGTGGGAAAAAGACAGCATTTTCAACAAATTGTG  200

seq1  CTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATTGATCCACTCC  250
      |||||||||||||  |||||||||||||||| |||||||||||||| || 
seq2  CTGGCACAACTGGCGGTTATCATGTAGAAGATTGCGAATTGATCCATTCT  250

seq1  TATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACGCCACATA  300
      ||||||||||||||||| |||| | ||||||||||| ||||| |||||||
seq2  TATCTCCTTGTACTAAGTTCAAGTGTAAGTGGATCATGGAACTCCACATA  300

seq1  AAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGA  350
      ||||||||||||||||||| |||||||| |||||||||||||||||| ||
seq2  AAACCAGAGACACTGAAACGTATAGAGGTGAAAGTGGGGAAAAGCCTCGA  350

seq1  AGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGCAATGGCTTGTG  400
      |||||||| ||||| |||||||||| || ||||||||||| |||||| ||
seq2  AGATATGGGCACAGAGGAAAAATTCTTGAATAGAACAGCAGTGGCTTTTG  400

seq1  CTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAACTGCAAAGCTTC  450
      ||||||||   ||||| ||||||||||||||||||||| |||||| ||||
seq2  CTGTAAGAGCCAGAATTGACAAATGGGACCTCATGAAATTGCAAACCTTC  450

seq1  TGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-CACCAACAGATTG  499
      |  |||||||||||||| |||||||||||||||||| ||||||| |||||
seq2  TTTAAGGCAAAAGACACTGTCAATAAGACAAAAAGGCCACCAACGGATTG  500

seq1  GGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAATA  549
      |||||||||||||||| ||||||||||| |||||||||||| ||||||||
seq2  GGAAAGGATCTTTACCAATCCTAAATCAAATAGGGGACTAAGATCCAATA  550

seq1  TATA--TCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAATAACCCCA  597
      ||||  | ||| |||||||||| |||  ||||||||| ||||||||||||
seq2  TATATGTAAAGTACTCAAGAAGATGGCCTCCAGAAAACCAAATAACCCCA  600

seq1  TTAAAAAATGGGGCTCAGAGCTAAACAAAGAAT  630
      || ||||||||||| ||||| ||||||||||||
seq2  TT-AAAAATGGGGCACAGAGATAAACAAAGAAT  632

seq1: chr2_40152648_40153670
seq2: B6Ng01-029C02.g_66_1073

seq1  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50

seq1  TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC  100

seq1  CTATAGAAACACACAGATAATGAACCTGGAGTAGTCAAAATGAAGGAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGAAACACACAGATAATGAACCTGGAGTAGTCAAAATGAAGGAACT  150

seq1  GCTAGAGTTATTACTAGCCCTGAGTTTAAGTTATGCTAAGGAACTATAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGTTATTACTAGCCCTGAGTTTAAGTTATGCTAAGGAACTATAGC  200

seq1  AATAAAACCAGCATGGTATTGACATAAAAACACATGTATTGATCAATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACCAGCATGGTATTGACATAAAAACACATGTATTGATCAATGAA  250

seq1  ATAGCACTGAAGACTTATCACCTGAACTTTGCTAAACTACCCTGCATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCACTGAAGACTTATCACCTGAACTTTGCTAAACTACCCTGCATCTT  300

seq1  ATGGTTGAAATAATTCATCTTGGTATAACATTTGTATATTTTTAATACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGAAATAATTCATCTTGGTATAACATTTGTATATTTTTAATACAA  350

seq1  ATATATTATCAAATCCATCAATCATTAAAATAACAGCATTATATACTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTATCAAATCCATCAATCATTAAAATAACAGCATTATATACTTAT  400

seq1  GTTATTATTGAAGTTTTGTTTTAATATATAAATATTATTACAATTATTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTATTGAAGTTTTGTTTTAATATATAAATATTATTACAATTATTCC  450

seq1  TATTGTAATTCCTTTTTATCTGTCTACTACGAGAAACAAAAACAAATATT  500
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TATTGTAATTCCTTTTTATCTGTCTACTACGAGAAACGAAAACAAATATT  500

seq1  GTAAAGAATTGTCAGTTTTTCCAGCATGATTTAGTATGTACCATCATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGAATTGTCAGTTTTTCCAGCATGATTTAGTATGTACCATCATTTG  550

seq1  AAAGGGAAGTACCTGTTCTATCATCTGAAACAGTCAATATACTCTCTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAAGTACCTGTTCTATCATCTGAAACAGTCAATATACTCTCTTAT  600

seq1  CAATCAGTCTTTCAATGCTTTGCATTTCAGTCACGTGTTTTCATGTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGTCTTTCAATGCTTTGCATTTCAGTCACGTGTTTTCATGTTCCT  650

seq1  CCACAATAAACTGAATATGGGGGTTTGTGTAGTCACAAGGGACTCTTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATAAACTGAATATGGGGGTTTGTGTAGTCACAAGGGACTCTTCCA  700

seq1  GTTCTTGATTTTACTGACTTGAAATGCCACCCTAAACCTCATTTCTATTT  750
      | |||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GATCTTGATTTTACTGACTTGAAATGCCACCCTAAACCTCATTTCTATGT  750

seq1  TTGCCTTCTGTCCCCCCTTTTCTTTTTTCTTTTATCCTCCCCCTCCTCTT  800
      |||||||||||||||||| | ||||| || ||||||||||||||||||||
seq2  TTGCCTTCTGTCCCCCCTATGCTTTTATC-TTTATCCTCCCCCTCCTCTT  799

seq1  CCTTCTCTTCTTCTCCTTTGTTTTGTTTTGGTATTTGTTTGTTTGTTATT  850
      |||||||||||||||||||||||   |||||||||||||||| |||||||
seq2  CCTTCTCTTCTTCTCCTTTGTTT--GTTTGGTATTTGTTTGTATGTTATT  847

seq1  TTATCTTTTTTTCCCAGATCGGGTGTGTCTGTGTAGCACTGGCTGTTCTA  900
      |||||||||||| | ||||||||||||  ||||||||| |||||||||||
seq2  TTATCTTTTTTT-CTAGATCGGGTGTG-GTGTGTAGCATTGGCTGTTCTA  895

seq1  GAATTTTCTCTCTGGAGACTAGGCTGCCCTAGTATTCAGATGGAATGATC  950
      |||||||||||  |||||||||||||||||| ||  || |||||||||||
seq2  GAATTTTCTCT-AGGAGACTAGGCTGCCCTAATA-ACAAATGGAATGATC  943

seq1  TAGACGTCCCCACTTCTTTCTTTGCTTGGGATGAAATAGAAATATGCCTT  1000
      ||||||| ||| |||| |||||||||| ||||||||||| |||||||  |
seq2  TAGACGT-CCCTCTTC-TTCTTTGCTT-GGATGAAATAG-AATATGC--T  987

seq1  TTATTGCCATCAGAGTTTTCCTG  1023
       ||||| ||||| || |||||||
seq2  CTATTG-CATCA-AGGTTTCCTG  1008