BAC Information

Click to search

BAC

Clone NameB6Ng01-029G14
Chromosome3 (Build37)
Map Location 138,523,744 - 138,524,819
singlet/doubletsinglet
Overlap geneTspan5
Upstream geneH2afz, Dnajb14, Map2k1ip1, Dapp1, EG329763, LOC100039528, Mttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a, LOC639769, Adh4, Adh5, Metap1, EG383925, EG668879, Eif4e, EG545570, LOC668881, LOC668882, Ppia-ps3_1437.1, LOC620771
Downstream geneRap1gds1, EG229879, B930007M17Rik, LOC100039840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029G14.bB6Ng01-029G14.g
ACCDH859620DH859621
length1,2721,071
definitionDH859620|Mus musculus domesticus DNA, BAC clone: B6Ng01-029G14, 5' end.DH859621|Mus musculus domesticus DNA, BAC clone: B6Ng01-029G14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagagtttatcttgtgttgaccaactactcctgggcatgggacct
atgctagggtgtggttgatactcccaatgacactccattagaccaaactg
atttttcatttgctggcggttattagttgcaaattcttcttggttcagta
tggggcttcctctaacttgaatcttcataggtcccgtgcctgctgccaca
gtctctgtgttccatctgtgcaccggtcctgttatgtccgtggagttaca
ctcttctgactcttacaatctttctacctcctcttctgcatagatctttg
agactggaggggaagataaagacgtcccatgtaggactgagtgcttcaga
gtctctcactcggcatgttatctagctgtaggtgtctgtcagttaattct
tgccagcttcacgaagcttctctggtgagggttgaacaaggcatggatgt
gggtgcagcattacgttattaggagtcatgtttttgctattctccttatc
agaaaaatggtagtgggttttcctgtaggcatgtgatctatctagtctag
gttcctggccactctccaagtgtcgggtgtgggatctatttcatggagtg
ggccttaaatactagacaaaaatatttgctcttggtgtaacatctatgcc
acactgaagcagggtctcctgcagagcactggctgttgtagtagcagggt
tgtaactgggcggtcctgccagtgtcaggggttccttgaatgactggcac
catgaatgctagtcattaggggtgacgcttctaggtagttaagacaccag
cttgacttcttcatgctcgaagacataagtaagttgccttcagcaacagt
cttgccatcagattgtggagaacaatcaatagacttggcaatagcctgtg
atgtttggggtgtttcatgagagccctctgaccaacactcaactaatgca
actcattcctggtactgagcctagatgtctagtcagatggcattgtcttt
tcccattatattgtgagtcacttaaatttcctccaagtatgtgtatttta
catagcattttcaatagactgccatgttttcgcgagccttcagtgttagt
tggtccttccaatattcctcctctgtcttgctgctcattccaccttagct
acattcggtttcctttcgtgggaagctaatctgatctctccttggagcct
ctcatccctgacctgaaactgaactctctttctcaagttgtgaagcgtga
taggttagagctataaccatct
gaattcagttagcagccaaatactcaaacaagaaaaacatccttcagaat
ttctgctaggtccagccagccctgagaacagcacccagaagtcgattctg
tctgcagagcagtaggttttatttcccctgtactgggaagttgaagacgg
ggcccagtgtgtgcttggaaagcactaaccactgagcagcaacccagacc
cacattggaatgttgaagggccatagtttccaggtataagaccaattacc
cttcacacctccatcctgtcattaccggaaaacacttctcagtagttctc
agttctgcccacgtttcctccatatcctggacacgatcagctcctgcctg
ctcctccctcatcttcctttggatccctgtggatccagacgtctgcaacc
cacatggtgattcttctcctcagtgccagcctgtcccacccactcccacc
caccactcagtctcacagatggtccctgagaatcctcctgtcaccagggt
gatgaatgggcgccttacaaggtccaaaagtgccgtgccacacttgcgtc
tctgattgcatgccagcccctcccatctgctgttgttagccacacagatt
tggtgacttgtaattctctccttactacggggcagttttattctttcgtg
acctgaaagtcctctgaactgtaagagctatgtctgttttttcttatctc
cttttatcttgagacgtgtaaggtcaagtataaagttgggactcaaagcg
acttggaatactggaaaggtggctttttgaagtgtccatttcgtgccagt
tggggatgggacactgttccagttcaaaacaatggagtctgccaggatga
aaataactggatatggaagaagagcttttcattttgacagtggggcagat
gcatccttctggatcacctctgtgacactcgagactattttcctttctag
ttttgccaaagcatcagttgtgctggctctgaatccaggtctagcttcgt
cactgtaccactctgggttctcatgggtcattctcagttctggcagagaa
tgacttggatgcctagacatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_138523744_138524819
seq2: B6Ng01-029G14.g_66_1136

seq1  GAATTCAGTTAGCAGCCAAATACTCAAACAAGAAAAACATCCTTCAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTAGCAGCCAAATACTCAAACAAGAAAAACATCCTTCAGAAT  50

seq1  TTCTGCTAGGTCCAGCCAGCCCTGAGAACAGCACCCAGAAGTCGATTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTAGGTCCAGCCAGCCCTGAGAACAGCACCCAGAAGTCGATTCTG  100

seq1  TCTGCAGAGCAGTAGGTTTTATTTCCCCTGTACTGGGAAGTTGAAGACGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGAGCAGTAGGTTTTATTTCCCCTGTACTGGGAAGTTGAAGACGG  150

seq1  GGCCCAGTGTGTGCTTGGAAAGCACTAACCACTGAGCAGCAACCCAGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGTGTGTGCTTGGAAAGCACTAACCACTGAGCAGCAACCCAGACC  200

seq1  CACATTGGAATGTTGAAGGGCCATAGTTTCCAGGTATAAGACCAATTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGGAATGTTGAAGGGCCATAGTTTCCAGGTATAAGACCAATTACC  250

seq1  CTTCACACCTCCATCCTGTCATTACCGGAAAACACTTCTCAGTAGTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACACCTCCATCCTGTCATTACCGGAAAACACTTCTCAGTAGTTCTC  300

seq1  AGTTCTGCCCACGTTTCCTCCATATCCTGGACACGATCAGCTCCTGCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGCCCACGTTTCCTCCATATCCTGGACACGATCAGCTCCTGCCTG  350

seq1  CTCCTCCCTCATCTTCCTTTGGATCCCTGTGGATCCAGACGTCTGCAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCTCATCTTCCTTTGGATCCCTGTGGATCCAGACGTCTGCAACC  400

seq1  CACATGGTGATTCTTCTCCTCAGTGCCAGCCTGTCCCACCCACTCCCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTGATTCTTCTCCTCAGTGCCAGCCTGTCCCACCCACTCCCACC  450

seq1  CACCACTCAGTCTCACAGATGGTCCCTGAGAATCCTCCTGTCACCAGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTCAGTCTCACAGATGGTCCCTGAGAATCCTCCTGTCACCAGGGT  500

seq1  GATGAATGGGCGCCTTACAAGGTCCAAAAGTGCCGTGCCACACTTGCGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATGGGCGCCTTACAAGGTCCAAAAGTGCCGTGCCACACTTGCGTC  550

seq1  TCTGATTGCATGCCAGCCCCTCCCATCTGCTGTTGTTAGCCACACAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTGCATGCCAGCCCCTCCCATCTGCTGTTGTTAGCCACACAGATT  600

seq1  TGGTGACTTGTAATTCTCTCCTTACCACGGGGCAGTTTTATTCTTTCGTG  650
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGGTGACTTGTAATTCTCTCCTTACTACGGGGCAGTTTTATTCTTTCGTG  650

seq1  ACCTGAAAGTCCTCTGAACTGTAAGAGCTATGTCTGTTTTTTCTTATCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAAGTCCTCTGAACTGTAAGAGCTATGTCTGTTTTTTCTTATCTC  700

seq1  CTTTTATCTTGAGACGTGTAAGGTCAAGTATAAAGTTGGGACTCAAAGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATCTTGAGACGTGTAAGGTCAAGTATAAAGTTGGGACTCAAAGCG  750

seq1  ACTTGGAATACTGGAAAGGTGGCTTTTTGAAGTGTCCATTTCGTGCCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAATACTGGAAAGGTGGCTTTTTGAAGTGTCCATTTCGTGCCAGT  800

seq1  T-GGGATGGGACACTGTTCCAGTCCAAAACAATGGAGTCTGCCAGGATGA  849
      | ||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGGGGATGGGACACTGTTCCAGTTCAAAACAATGGAGTCTGCCAGGATGA  850

seq1  AAATAACTGGATATGGAAGAAGAGCTTTTCCACTTGACAGTGGGGCAGAT  899
      ||||||||||||||||||||||||||||||   |||||||||||||||||
seq2  AAATAACTGGATATGGAAGAAGAGCTTTTCATTTTGACAGTGGGGCAGAT  900

seq1  GCATCCTTCTGGAATCACC-CTGTGACACCCGAGACTATTTTCCTTTCCA  948
      |||||||||||| |||||| ||||||||| |||||||||||||||||| |
seq2  GCATCCTTCTGG-ATCACCTCTGTGACACTCGAGACTATTTTCCTTTCTA  949

seq1  GTTTTGCCAAAGCATCAGTTGTGCTGGCTCTGGAATCCAGGTCTAGCTTC  998
      ||||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  GTTTTGCCAAAGCATCAGTTGTGCTGGCTCT-GAATCCAGGTCTAGCTT-  997

seq1  CGTCACTGTACCACTCTTGGTTCCCATGGGGCCATTCTCAGTTCTGGCAG  1048
      ||||||||||||||||| ||||| ||| ||| ||||||||||||||||||
seq2  CGTCACTGTACCACTCTGGGTTCTCAT-GGGTCATTCTCAGTTCTGGCAG  1046

seq1  AAGAATGCACCTTGGATGCCTAGACATC  1076
       ||||||   ||||||||||||||||||
seq2  -AGAATG--ACTTGGATGCCTAGACATC  1071