BAC Information

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BAC

Clone NameB6Ng01-029M09
Chromosome3 (Build37)
Map Location 89,723,337 - 89,911,046
singlet/doubletdoublet
Overlap geneAtp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l
Upstream geneDap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra
Downstream geneRps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029M09.bB6Ng01-029M09.g
ACCDH859878DH859879
length1,0771,004
definitionDH859878|Mus musculus domesticus DNA, BAC clone: B6Ng01-029M09, 5' end.DH859879|Mus musculus domesticus DNA, BAC clone: B6Ng01-029M09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,723,337 - 89,724,422)(89,910,041 - 89,911,046)
sequence
gaattcagtatgaggttaaggatgaccttgaactcctggttctccagttt
ccacttcccaaacagtggtattaccagttctaacagcaaaaggaacaaag
gagccagatatgacagtgcatgccttcaatcccagtactcggggcagcag
cagctccaggccccaggactactcattgagacccagtgtcactgtattag
tcagggttctctagagtcacagaacttatggatagtctctagatagtaaa
ggaatttattgatgacttacagtcggcagcctaattcccaacaatggttc
agtcgcagctatgaatggaagtccaaggatctagcagttactcagtctca
cgcagcaagcaggcaaaggagcaagagcaagagctagactcccttcttcc
aatgtccttatattgtctccagcagaaggtgtagcccagattaaaggtgt
gttccaccacacctttaatcccagatgaaaggcgtagcccagattaaagg
tgtgttccttaaactcggagattcaatcttctggaatccatagccactat
ggctcaagatctccataccaatatccagataaggatctccaagcctccag
attagggtcactggtgagccttccaattccggattgtagttcattccaaa
tattgtcaagttgacaaccaggaatagccactacagtcaccaacaaagcc
ccaaagcacaaaatcaaatagtcagaactttgttatttacattagtcatt
atttaacagttaactgttatgaaaagtgtctttcttaaacaaactatatt
cttttctgacttgtaaaatggttccactgagctaagtttattgactttaa
agtaacgtgtagtaggatttaaaactttttacttcactagaacccaagtc
agataggaaggtaagcaggaccagggataagactcagtggtagacatgtg
cacagacactggaacccttatccattgctggtgggaatacaaatggtgcc
actttggaaacagcagaagttcttttttttttccgagaccagggttctct
gataagcctggctgtctggactcactt
gaattctaggaaagtcatggctacatagtgagactctgtgtcaaggaaca
atggccacaggaaccaatgagtcaaattccataacatacccacttctcga
gcaagaatgatgctgctgaggcgtatcggttgggtggattcagcaacaag
aacagctctttgggagcacgaggtaccattttcatataaaggctgaatgg
taactgcatcatgatgagtggaatgcctgccaagacaacatggtttagag
catgaaataaatacatggttcaggcaacacaggcaagtggagtctatagt
tcttccatgttacataccagcaggaatgcctgaggatactctacagaacc
actgttagatgacacaagaattaaaactggagaatgacaagaaccacttc
ccaatgatcacttgtgcaaagatctaaaatgtaattctcccacgatgttt
aaaataggactcacaagacagaacccaaccctaacaagaagactctggag
gccttggctactgcactcaaactgacaaaaggagatatcaggatttggtt
cttcaagaaagggcgtgagacagagcttaagcagttgtctaaggcccaca
gatcaaagctgaaccaagggttagtgtggaagtacttgctgaattcttcc
aaaagaattagtgctaacaaactgcttgtacaagacttgggaaatgtaca
gttaccacttgacaccaaaagggaccaccaggaagaacccaaggagacct
accaaaatgaccctggacttcccaaaattttggaagccttgaagagtttc
acactcttttctgggtacctctctctgcagagggcatgtcatagggtttc
tgactctctactgtaggctctttttgctaatattttctcagtttccttgt
tgaggcagagggctgttgggttttatgtctctcaatggtacattaataat
aaacctactctatttccaagaggaaagaggaaaggaggaagaagaaaaga
agaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_89723337_89724422
seq2: B6Ng01-029M09.b_50_1126

seq1  GAATTCAGTATGAGGTTAAGGATGACCTTGAACTCCTGGTTCTCCAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTATGAGGTTAAGGATGACCTTGAACTCCTGGTTCTCCAGTTT  50

seq1  CCACTTCCCAAACAGTGGTATTACCAGTTCTAACAGCAAAAGGAACAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCCCAAACAGTGGTATTACCAGTTCTAACAGCAAAAGGAACAAAG  100

seq1  GAGCCAGATATGACAGTGCATGCCTTCAATCCCAGTACTCGGGGCAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGATATGACAGTGCATGCCTTCAATCCCAGTACTCGGGGCAGCAG  150

seq1  CAGCTCCAGGCCCCAGGACTACTCATTGAGACCCAGTGTCACTGTATTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCAGGCCCCAGGACTACTCATTGAGACCCAGTGTCACTGTATTAG  200

seq1  TCAGGGTTCTCTAGAGTCACAGAACTTATGGATAGTCTCTAGATAGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTTCTCTAGAGTCACAGAACTTATGGATAGTCTCTAGATAGTAAA  250

seq1  GGAATTTATTGATGACTTACAGTCGGCAGCCTAATTCCCAACAATGGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTATTGATGACTTACAGTCGGCAGCCTAATTCCCAACAATGGTTC  300

seq1  AGTCGCAGCTATGAATGGAAGTCCAAGGATCTAGCAGTTACTCAGTCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGCAGCTATGAATGGAAGTCCAAGGATCTAGCAGTTACTCAGTCTCA  350

seq1  CGCAGCAAGCAGGCAAAGGAGCAAGAGCAAGAGCTAGACTCCCTTCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCAAGCAGGCAAAGGAGCAAGAGCAAGAGCTAGACTCCCTTCTTCC  400

seq1  AATGTCCTTATATTGTCTCCAGCAGAAGGTGTAGCCCAGATTAAAGGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCTTATATTGTCTCCAGCAGAAGGTGTAGCCCAGATTAAAGGTGT  450

seq1  GTTCCACCACACCTTTAATCCCAGATGAAAGGCGTAGCCCAGATTAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCACCACACCTTTAATCCCAGATGAAAGGCGTAGCCCAGATTAAAGG  500

seq1  TGTGTTCCTTAAACTCGGAGATTCAATCTTCTGGAATCCATAGCCACTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCCTTAAACTCGGAGATTCAATCTTCTGGAATCCATAGCCACTAT  550

seq1  GGCTCAAGATCTCCATACCAATATCCAGATAAGGATCTCCAAGCCTCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAAGATCTCCATACCAATATCCAGATAAGGATCTCCAAGCCTCCAG  600

seq1  ATTAGGGTCACTGGTGAGCCTTCCAATTCCGGATTGTAGTTCATTCCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGGTCACTGGTGAGCCTTCCAATTCCGGATTGTAGTTCATTCCAAA  650

seq1  TATTGTCAAGTTGACAACCAGGAATAGCCACTACAGTCACCAACAAAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCAAGTTGACAACCAGGAATAGCCACTACAGTCACCAACAAAGCC  700

seq1  CCAAAGCACAAAATCAAATAGTCAGAACTTTGTTATTTACATTAGTCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCACAAAATCAAATAGTCAGAACTTTGTTATTTACATTAGTCATT  750

seq1  ATTTAACAGTTAACTGTTATGAAAAGTGTCTTTCTTAAACAAACTATATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACAGTTAACTGTTATGAAAAGTGTCTTTCTTAAACAAACTATATT  800

seq1  CTTTTCTGACTTGTAAAATGGTTCCACTGAGCTAAGTTTATTGACTTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGACTTGTAAAATGGTTCCACTGAGCTAAGTTTATTGACTTTAA  850

seq1  AGTAACGTGTAGTAGGATTTAAAAACTTTTTACTTCACTAGAACCCAAGT  900
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGTAACGTGTAGTAGGATTT-AAAACTTTTTACTTCACTAGAACCCAAGT  899

seq1  CAGATAGGAAGGTAAGCAGGAACCAGGGATAAGACTCAGTGGTAGACATG  950
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CAGATAGGAAGGTAAGCAGG-ACCAGGGATAAGACTCAGTGGTAGACATG  948

seq1  TGCACAAGACACTGGAACCCTTATCCATTGCTGGTGGGAATACAAAATGG  1000
      ||||| ||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGCAC-AGACACTGGAACCCTTATCCATTGCTGGTGGGAATAC-AAATGG  996

seq1  TGCCACTTTGGAAAACAGCAGAAGTTCTTTTTTTTTTTCCGAGACAGGGT  1050
      ||||||||||| ||||||||||||||| |||||||||||||||||  || 
seq2  TGCCACTTTGG-AAACAGCAGAAGTTC-TTTTTTTTTTCCGAGACCAGGG  1044

seq1  TTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTT  1086
      ||||||| |||  ||||||||| |||| ||||||||
seq2  TTCTCTG-ATAAGCCTGGCTGT-CTGG-ACTCACTT  1077

seq1: chr3_89910041_89911046
seq2: B6Ng01-029M09.g_66_1069 (reverse)

seq1  TTCTT-TTTTCTTCCTTCCTTCCTTTCCTTCTTTCCTTCTTTGGAATAG-  48
      ||||| ||||||| ||||| |||||||| ||||||| |||| | ||||| 
seq2  TTCTTCTTTTCTT-CTTCC-TCCTTTCC-TCTTTCC-TCTTGGAAATAGA  46

seq1  GTAGGTTTATTATTAATGTACCATTGGTAGACATAAAACCCAACAGCCCT  98
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  GTAGGTTTATTATTAATGTACCATTGAGAGACATAAAACCCAACAGCCCT  96

seq1  CTGCCTCAACAAGGAAACTGAGAAAATATTAGCAAAAAGAGCCTACAGTA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCAACAAGGAAACTGAGAAAATATTAGCAAAAAGAGCCTACAGTA  146

seq1  GGGAGTCAGAAACCCTATGACATGCCCTCTGCAGAGAGAGGTACCCAGAA  198
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTCAGAAACCCTATGACATGCCCTCTGCAGAGAGAGGTACCCAGAA  196

seq1  AAGAGTGTGAAACTCTTCAAGGCTTCCAAAATTTTGGGGAGTCCAGGGTC  248
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAGAGTGTGAAACTCTTCAAGGCTTCCAAAATTTTGGGAAGTCCAGGGTC  246

seq1  ATTTTGGTAGGTCTCCTTGGGTTCTTCCTGGTGGTCCCTTTTGGTGTCAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGTAGGTCTCCTTGGGTTCTTCCTGGTGGTCCCTTTTGGTGTCAA  296

seq1  GTGGTAACTGTACATTTCCCAAGTCTTGTACAAGCAGTTTGTTAGCACTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAACTGTACATTTCCCAAGTCTTGTACAAGCAGTTTGTTAGCACTA  346

seq1  ATTCTTTTGGAAGAATTCAGCAAGTACTTCCACACTAACCCTTGGTTCAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTGGAAGAATTCAGCAAGTACTTCCACACTAACCCTTGGTTCAG  396

seq1  CTTTGATCTGTGGGCCTTAGACAACTGCTTAAGCTCTGTCTCACGCCCTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATCTGTGGGCCTTAGACAACTGCTTAAGCTCTGTCTCACGCCCTT  446

seq1  TCTTGAAGAACCAAATCCTGATATCTCCTTTTGTCAGTTTGAGTGCAGTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAGAACCAAATCCTGATATCTCCTTTTGTCAGTTTGAGTGCAGTA  496

seq1  GCCAAGGCCTCCAGAGTCTTCTTGTTAGGGTTGGGTTCTGTCTTGTGAGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGCCTCCAGAGTCTTCTTGTTAGGGTTGGGTTCTGTCTTGTGAGT  546

seq1  CCTATTTTAAACATCGTGGGAGAATTACATTTTAGATCTTTGCACAAGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTTAAACATCGTGGGAGAATTACATTTTAGATCTTTGCACAAGTG  596

seq1  ATCATTGGGAAGTGGTTCTTGTCATTCTCCAGTTTTAATTCTTGTGTCAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGGGAAGTGGTTCTTGTCATTCTCCAGTTTTAATTCTTGTGTCAT  646

seq1  CTAACAGTGGTTCTGTAGAGTATCCTCAGGCATTCCTGCTGGTATGTAAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGTGGTTCTGTAGAGTATCCTCAGGCATTCCTGCTGGTATGTAAC  696

seq1  ATGGAAGAACTATAGACTCCACTTGCCTGTGTTGCCTGAACCATGTATTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGAACTATAGACTCCACTTGCCTGTGTTGCCTGAACCATGTATTT  746

seq1  ATTTCATGCTCTAAACCATGTTGTCTTGGCAGGCATTCCACTCATCATGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATGCTCTAAACCATGTTGTCTTGGCAGGCATTCCACTCATCATGA  796

seq1  TGCAGTTACCATTCAGCCTTTATATGAAAATGGTACCTCGTGCTCCCAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTACCATTCAGCCTTTATATGAAAATGGTACCTCGTGCTCCCAAA  846

seq1  GAGCTGTTCTTGTTGCTGAATCCACCCAACCGATACGCCTCAGCAGCATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTTCTTGTTGCTGAATCCACCCAACCGATACGCCTCAGCAGCATC  896

seq1  ATTCTTGCTCGAGAAGTGGGTATGTTATGGAATTTGACTCATTGGTTCCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGCTCGAGAAGTGGGTATGTTATGGAATTTGACTCATTGGTTCCT  946

seq1  GTGGCCATTGTTCCTTGACACAGAGTCTCACTATGTAGCCATGACTTTCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCATTGTTCCTTGACACAGAGTCTCACTATGTAGCCATGACTTTCC  996

seq1  TAGAATTC  1006
      ||||||||
seq2  TAGAATTC  1004