BAC Information

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BAC

Clone NameB6Ng01-029N24
Chromosome3 (Build37)
Map Location 25,739,946 - 25,947,270
singlet/doubletdoublet
Overlap geneNlgn1
Upstream geneLOC100039592, LOC621017
Downstream geneLOC229152, Spata16, LOC665258
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029N24.bB6Ng01-029N24.g
ACCDH859945DH859946
length1,086822
definitionDH859945|Mus musculus domesticus DNA, BAC clone: B6Ng01-029N24, 5' end.DH859946|Mus musculus domesticus DNA, BAC clone: B6Ng01-029N24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,739,946 - 25,741,034)(25,946,451 - 25,947,270)
sequence
gaattcccaaggtgcttaaataaaatgtattaatggcatcagtatgaaaa
ctctattttcagtaagccagtaggtgatcctgagatgtttgagtagtggc
taagaacatatattctacagcaaagagtgagtcccagcccatggggctta
gggaactctgtagacgaagaagggaaagagcataaggaccagagatgatg
gagcacaccaaaacaaaacaaaacaaagcattgccctctaagtcaacacg
actgaagctcatcagccacagagatccacgcggtgtgcgcggggcctgca
ttgggtctcggtcaggtccttgctgtatgtattatggctttcagtttagt
gctcttacaggattcctgacgataagaaggagtaggtctctgagttgtct
gcaatctcttgggaccttttccatttgtttgacttgtccaacccagtgtg
atggttctgatttctcttattatattttattttctatgcttagaaaacta
tttgctttctagtgagagacagaaagggagtggatccagaatggaaggga
atgcggagaaactgggaggactagaaggagtggaaaccacattcaggata
tattatgtgagaaaaatacctacttatttttaattaatatctatttttaa
tataaggaaaaatacgtatagatttaacatcatatattaatggtccagca
ccacaactagctggctgggacctcaggacaaaggcactcattctcctcct
aggcttttgaatctacaaaatggcaatgctatttggaagtccaagacaaa
aattaaaaagtataaattggtaaaaattttataattaaataaatacaaaa
cattaaaagatacaaacccaaaacctcccagcacatggtgctatttaaat
gtcagccattatcttgcagatatgtatatttttatcatttgtattcattt
cacatttaatagatgagatataacttctccatccagggttccttttttgt
gagcagtttcttagaccacttatcaaacctaggatattcaacagtgcagg
tgtagtagcccagtagagactgagtaagattctagg
gaattcacttgtagatatgctggagtggtctagctagatcttaagttcag
atgacattcaagtaagatcctattctaactgttgctgactaacatgattt
actctctgcttttcctgcttgttttaaaattgaatcttgagaaattgcat
gaaatattttaggcttaaaaattgtaaaagttgacattatcttaattaat
tagacaggtatcttcacttagttggttttatttgttttgtttgttttggg
gatttttttttttggtttttttttttttttttacttgaccaaagcagtta
aaaatcataagtgctttcaacacttatacagtgtaccaatgaatacaatt
ccagaagttttcacatgtaactaaaccttgacctacgtagaatagcttgg
aagttattgtttttaactcagttcttttatgttttaagtaatggctcatt
ccatactggtataatttaattaattaaaccatttcaatcctgtattccca
gtatggtaccagatgattgtgaccatgatgctagccctcattattagctc
acctcccgccttcctctttagtcaggggaactcattgactaatgtatggc
ttgggtgactttcaggagaggcacaaaaaccaagtggcgggttcagttga
aaataaattttcagtaagttgctccctgtataacaatggatacaaaatga
agtttatttagtaattacaagttatgaggcaaaatcatttaaaacccaga
ggacatggggagaacagatttgaatatttttaaatgtatggctaaggcta
ttggcatggtttatgagcagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_25739946_25741034
seq2: B6Ng01-029N24.b_46_1131

seq1  GAATTCCCAAGGTGCTTAAATAAAATGTATTAATGGCATCAGTATGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAGGTGCTTAAATAAAATGTATTAATGGCATCAGTATGAAAA  50

seq1  CTCTATTTTCAGTAAGCCAGTAGGTGATCCTGAGATGTTTGAGTAGTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTTTCAGTAAGCCAGTAGGTGATCCTGAGATGTTTGAGTAGTGGC  100

seq1  TAAGAACATATATTCTACAGCAAAGAGTGAGTCCCAGCCCATGGGGCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACATATATTCTACAGCAAAGAGTGAGTCCCAGCCCATGGGGCTTA  150

seq1  GGGAACTCTGTAGACGAAGAAGGGAAAGAGCATAAGGACCAGAGATGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTCTGTAGACGAAGAAGGGAAAGAGCATAAGGACCAGAGATGATG  200

seq1  GAGCACACCAAAACAAAACAAAACAAAGCATTGCCCTCTAAGTCAACACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACACCAAAACAAAACAAAACAAAGCATTGCCCTCTAAGTCAACACG  250

seq1  ACTGAAGCTCATCAGCCACAGAGATCCACGCGGTGTGCGCGGGGCCTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGCTCATCAGCCACAGAGATCCACGCGGTGTGCGCGGGGCCTGCA  300

seq1  TTGGGTCTCGGTCAGGTCCTTGCTGTATGTATTATGGCTTTCAGTTTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCTCGGTCAGGTCCTTGCTGTATGTATTATGGCTTTCAGTTTAGT  350

seq1  GCTCTTACAGGATTCCTGACGATAAGAAGGAGTAGGTCTCTGAGTTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTACAGGATTCCTGACGATAAGAAGGAGTAGGTCTCTGAGTTGTCT  400

seq1  GCAATCTCTTGGGACCTTTTCCATTTGTTTGACTTGTCCAACCCAGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTCTTGGGACCTTTTCCATTTGTTTGACTTGTCCAACCCAGTGTG  450

seq1  ATGGTTCTGATTTCTCTTATTATATTTTATTTTCTATGCTTAGAAAACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCTGATTTCTCTTATTATATTTTATTTTCTATGCTTAGAAAACTA  500

seq1  TTTGCTTTCTAGTGAGAGACAGAAAGGGAGTGGATCCAGAATGGAAGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTCTAGTGAGAGACAGAAAGGGAGTGGATCCAGAATGGAAGGGA  550

seq1  ATGCGGAGAAACTGGGAGGACTAGAAGGAGTGGAAACCACATTCAGGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGGAGAAACTGGGAGGACTAGAAGGAGTGGAAACCACATTCAGGATA  600

seq1  TATTATGTGAGAAAAATACCTACTTATTTTTAATTAATATCTATTTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGTGAGAAAAATACCTACTTATTTTTAATTAATATCTATTTTTAA  650

seq1  TATAAGGAAAAATACGTATAGATTTAACATCATATATTAATGGTCCAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGAAAAATACGTATAGATTTAACATCATATATTAATGGTCCAGCA  700

seq1  CCACAACTAGCTGGCTGGGACCTCAGGACAAAGGCACTCATTCTCCTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAACTAGCTGGCTGGGACCTCAGGACAAAGGCACTCATTCTCCTCCT  750

seq1  AGGCTTTTGAATCTACAAAATGGCAATGCTATTTGGAAGTCCAAGACAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTTGAATCTACAAAATGGCAATGCTATTTGGAAGTCCAAGACAAA  800

seq1  AATTAAAAAGTATAAATTGGTAAAAATTTTATAATTAAATAAATACAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAAGTATAAATTGGTAAAAATTTTATAATTAAATAAATACAAAA  850

seq1  CATTAAAAGAATACAAACCCAAAACCTCCCAGCACATGGTGCTATTTAAA  900
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAAG-ATACAAACCCAAAACCTCCCAGCACATGGTGCTATTTAAA  899

seq1  TGTCAGCCATTATCTTGCAGATATGTATATTTTTATCATTTGTATTCATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCCATTATCTTGCAGATATGTATATTTTTATCATTTGTATTCATT  949

seq1  TCACATTTAATAGATGAGATATAAACTCTCCATCCAGTGTTCC-TTTTTG  999
      ||||||||||||||||||||||||  ||||||||||| ||||| ||||||
seq2  TCACATTTAATAGATGAGATATAACTTCTCCATCCAGGGTTCCTTTTTTG  999

seq1  TGAGCAGTTTCTAGAACCACTTATCAAACCTAAGATATTCAACAGTGCAG  1049
      ||||||||||||   ||||||||||||||||| |||||||||||||||||
seq2  TGAGCAGTTTCTTAGACCACTTATCAAACCTAGGATATTCAACAGTGCAG  1049

seq1  TGTTAGTAGGCACAGTAGAGAACTGAGTAAGGATTCTAGG  1089
         ||||| || |||||||| ||||||||| |||||||||
seq2  GTGTAGTA-GCCCAGTAGAG-ACTGAGTAA-GATTCTAGG  1086

seq1: chr3_25946451_25947270
seq2: B6Ng01-029N24.g_66_887 (reverse)

seq1  CACTGCTCATAAACCATGGCAATATGCCTTAGCCATACATTAAAAATTAT  50
      |||||||||||||||||| ||||| |||||||||||||||| |||| |||
seq2  CACTGCTCATAAACCATGCCAATA-GCCTTAGCCATACATTTAAAAATAT  49

seq1  TCAAATCTGTTCTCCCCATGTCCTCTGGGTTTTAAATGATTTTGCCTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCTGTTCTCCCCATGTCCTCTGGGTTTTAAATGATTTTGCCTCAT  99

seq1  AACTTGTAATTACT-AATAAACTTCA-TTTGTATCCATTGTTATACAGGG  148
      |||||||||||||| ||||||||||| |||||||||||||||||||||||
seq2  AACTTGTAATTACTAAATAAACTTCATTTTGTATCCATTGTTATACAGGG  149

seq1  AGCAACTTACTG-AAATTTATTTTCAACTGAACCCGCCACTTGGTTTTTG  197
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGCAACTTACTGAAAATTTATTTTCAACTGAACCCGCCACTTGGTTTTTG  199

seq1  TGCCTCTCCTGAAAGTCACCCAAGCCATACATTAGTCAATGAGTTCCCCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTCCTGAAAGTCACCCAAGCCATACATTAGTCAATGAGTTCCCCT  249

seq1  GACTAAAGAGGAAGGCGGGAGGTGAGCTAATAATGAGGGCTAGCATCATG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAAGAGGAAGGCGGGAGGTGAGCTAATAATGAGGGCTAGCATCATG  299

seq1  GTCACAATCATCTGGTACCATACTGGGAATACAGGATTGAAATGGTTTAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAATCATCTGGTACCATACTGGGAATACAGGATTGAAATGGTTTAA  349

seq1  TTAATTAAATTATACCAGTATGGAATGAGCCATTACTTAAAACATAAAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAAATTATACCAGTATGGAATGAGCCATTACTTAAAACATAAAAG  399

seq1  AACTGAGTTAAAAACAATAACTTCCAAGCTATTCTACGTAGGTCAAGGTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGTTAAAAACAATAACTTCCAAGCTATTCTACGTAGGTCAAGGTT  449

seq1  TAGTTACATGTGAAAACTTCTGGAATTGTATTCATTGGTACACTGTATAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTACATGTGAAAACTTCTGGAATTGTATTCATTGGTACACTGTATAA  499

seq1  GTGTTGAAAGCACTTATGATTTTTAACTGCTTTGGTCAAGTAAAAAAAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGAAAGCACTTATGATTTTTAACTGCTTTGGTCAAGTAAAAAAAAA  549

seq1  AAAAAAAACCAAAAAAAAAAATCCCCAAAACAAACAAAACAAATAAAACC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACCAAAAAAAAAAATCCCCAAAACAAACAAAACAAATAAAACC  599

seq1  AACTAAGTGAAGATACCTGTCTAATTAATTAAGATAATGTCAACTTTTAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGTGAAGATACCTGTCTAATTAATTAAGATAATGTCAACTTTTAC  649

seq1  AATTTTTAAGCCTAAAATATTTCATGCAATTTCTCAAGATTCAATTTTAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTAAGCCTAAAATATTTCATGCAATTTCTCAAGATTCAATTTTAA  699

seq1  AACAAGCAGGAAAAGCAGAGAGTAAATCATGTTAGTCAGCAACAGTTAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCAGGAAAAGCAGAGAGTAAATCATGTTAGTCAGCAACAGTTAGA  749

seq1  ATAGGATCTTACTTGAATGTCATCTGAACTTAAGATCTAGCTAGACCACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATCTTACTTGAATGTCATCTGAACTTAAGATCTAGCTAGACCACT  799

seq1  CCAGCATATCTACAAGTGAATTC  820
      |||||||||||||||||||||||
seq2  CCAGCATATCTACAAGTGAATTC  822