BAC Information

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BAC

Clone NameB6Ng01-029O21
Chromosome3 (Build37)
Map Location 154,384,194 - 154,511,519
singlet/doubletdoublet
Overlap geneBC007180, Tnni3k
Upstream geneSt6galnac3, Asb17, Msh4, Rabggtb, Acadm, Slc44a5, LOC100040980, Lhx8, LOC100040810, LOC100040829, Tyw3, Cryz
Downstream geneFpgt, Lrrc44, EG383956, Scp2-ps1, EG668902
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029O21.bB6Ng01-029O21.g
ACCDH859985DH859986
length1,1551,045
definitionDH859985|Mus musculus domesticus DNA, BAC clone: B6Ng01-029O21, 5' end.DH859986|Mus musculus domesticus DNA, BAC clone: B6Ng01-029O21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,510,343 - 154,511,519)(154,384,194 - 154,385,245)
sequence
gaattcccatttattaggcaaaagaagagctgagccaagcccaagctaga
atgtcaccataccctaaggcataattgtgggctactttgagaaagctgct
ggtgagaaaagggccaatgtgcatgtgcaagtgacctggggaagagttga
tggtcttcatcagattctcagaagttctagaaactaaaggcaaacagcaa
gaactaccaaactacgtgatttcttgcactttctctacccagagaagtct
gttcttgaagtcccatgttacaggcataaacttgaacttgtctccaaaac
caagtatggtcttggctgccttcctgaattcttctccacctccaaacccc
tcccccaggatgctgaagaactgcaggtgtttccccaaggccatcattga
tgtgacaaaccaagaagccagtgctacaaagggctaactagccatgtcct
cttgtgtatataagtcccctacagacagaacaagcaaggctttaggttcc
tctgaaagctaaaaggaaatgaaaaagctaagccttgattttttataaag
taaaaccaatcttttctgatttctatggaagctgttttttcatggccacc
tttttctggagtcaaaccctcagccccaaggaaccagcaagaaatacact
cagataaactcacatcctgccttatgccacataggaaataaaatatagtt
tcattcttatcctgtggtgcctgaatccagccttagggccagatcgccac
agaaagtgtatcacatgattccgctgtcattcattttccacagaaaatcc
tgcttcctccaaaccagttgaaataagtggcagagcctgggtcctgagca
gccgtgtaagtgtgagtgtgcactgcagggcatgagagcattgccccaga
attcaggtaggaaaggaagctgcttgattcactgccttcgcagaagtatg
gcattgcctgtagcagcagttggtgcacggcaggtcactgggcttccaat
ggtgagaaaatgataagccctgactttccagaactgagaagtatatgctt
ttcagcccagcaggcaagtgtgttttctgctcgtttcaaatgatcactgg
gcgttaggagggaattctttcattgcatgtccagaaggctgttactgcat
ttggc
gaattcactcaggtgtttctcagtcacatccagcattccttcccatctct
tcgtagatgagggagggaagatgcccctgagctggggtggcttttgaagg
atatccctatagctctggctaggtggggtggggactatggttcaatgcta
cctcagctttcagtagccaaagtgccaaccttttcctgaagggaaaggta
tgaattccaatgagctctgcatgtagggacagaggcacacacccttatct
taaaccaagcagctcggacacgattgtttttacaagtatgttgtctgggt
gttaatttatgagaatcaatgaaagtatctatcatgtaaaattagaatgc
ttatgtttaggtgtctatgtttagacagtttgctgggttctgtatcacac
ttgattcaacagcatgtatacagaacagctatttagtggagaaagtaact
ttcccaaatgaaatcttatttgggtggcctagcaaacaacacatggggtg
gaccaagaatgcagaccccacagctagctgaggagggtgctactggacag
gtgttattttgtgtatacactgatcctgggtctctgttgagacactgaat
aatcttacataacagcttggaatggggacttaaataatggattctgtccc
tgctgtaatgtagtctccccttagcttgatcagtctgagagaactgttca
agactgaagagtggctttgttaggagctaccatgaggtgcagcagccaga
gggatttatccaggctatcaaagatctgtcttcagtggtgtgtgattctg
tgaaacgagaataggttttaggtttccgtagagaataaataaaagcatcc
gtttgtacttttgggaatagctcactcgctgaaatgtggcatttgttaat
ttttttgcttcttgaaaattagatacattaaagatgatggaagaatgggg
ctagagcatccttttagtcccaaagtattctcagtgcttgtgtagtcagc
ttgtaagtctgaggctacagtgagctgcttaatgccactcacgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_154510343_154511519
seq2: B6Ng01-029O21.b_45_1199 (reverse)

seq1  GCCAATTTGCAGTAAACAGCCTTCCTGGAGCATGGCATTTGAGAAGAATC  50
      |||||  |||||| ||||||||| ||||| ||||  |  ||| |||||| 
seq2  GCCAA-ATGCAGT-AACAGCCTT-CTGGA-CATGCAA--TGA-AAGAATT  43

seq1  GCCTCCTAACG-CCAGTGATTCATTTTGGAAACGATGTCAAGAAACACAC  99
       |||||||||| ||||||| ||||||  |||||||   ||  ||||||||
seq2  CCCTCCTAACGCCCAGTGA-TCATTT--GAAACGA--GCAGAAAACACAC  88

seq1  TTTGCTTGCTGAGCTGAAAAGCATTATAACTTCTCAGTTCTGGGAAAGTC  149
       |||| ||||| ||||||||||| ||| ||||||||||||| ||||||||
seq2  -TTGCCTGCTGGGCTGAAAAGCA-TAT-ACTTCTCAGTTCT-GGAAAGTC  134

seq1  AGGGCTTAATTCATTGTCTCA-CATTGGGAGCCCAGTGGACCTGGCCGTG  198
      ||||||||  ||||| ||||| |||||| |||||||| ||||| ||||| 
seq2  AGGGCTTA--TCATTTTCTCACCATTGGAAGCCCAGT-GACCT-GCCGT-  179

seq1  GCACCAACCTGCTGGCTACAGGCAATGCCAATACTTCTGCGAAGGCAGTG  248
      ||||||| ||||| ||||||||||||||| ||||||||||||||||||||
seq2  GCACCAA-CTGCT-GCTACAGGCAATGCC-ATACTTCTGCGAAGGCAGTG  226

seq1  AATCAAGCAGCTTCCTTTCCTACCTGAATTCTGGGGCAATGCTCTCATGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGCAGCTTCCTTTCCTACCTGAATTCTGGGGCAATGCTCTCATGC  276

seq1  CCTGCAGTGCACACTCACACTTACACGGCTGCTCAGGACCCAGGCTCTGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGTGCACACTCACACTTACACGGCTGCTCAGGACCCAGGCTCTGC  326

seq1  CACTTATTTCAACTGGTTTGGAGGAAGCAGGATTTTCTGTGGAAAATGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATTTCAACTGGTTTGGAGGAAGCAGGATTTTCTGTGGAAAATGAA  376

seq1  TGACAGCGGAATCATGTGATACACTTTCTGTGGCGATCTGGCCCTAAGGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCGGAATCATGTGATACACTTTCTGTGGCGATCTGGCCCTAAGGC  426

seq1  TGGATTCAGGCACCACAGGATAAGAATGAAACTATATTTTATTTCCTATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCAGGCACCACAGGATAAGAATGAAACTATATTTTATTTCCTATG  476

seq1  TGGCATAAGGCAGGATGTGAGTTTATCTGAGTGTATTTCTTGCTGGTTCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATAAGGCAGGATGTGAGTTTATCTGAGTGTATTTCTTGCTGGTTCC  526

seq1  TTGGGGCTGAGGGTTTGACTCCAGAAAAAGGTGGCCATGAAAAAACAGCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCTGAGGGTTTGACTCCAGAAAAAGGTGGCCATGAAAAAACAGCT  576

seq1  TCCATAGAAATCAGAAAAGATTGGTTTTACTTTATAAAAAATCAAGGCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGAAATCAGAAAAGATTGGTTTTACTTTATAAAAAATCAAGGCTT  626

seq1  AGCTTTTTCATTTCCTTTTAGCTTTCAGAGGAACCTAAAGCCTTGCTTGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTTCATTTCCTTTTAGCTTTCAGAGGAACCTAAAGCCTTGCTTGT  676

seq1  TCTGTCTGTAGGGGACTTATATACACAAGAGGACATGGCTAGTTAGCCCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGTAGGGGACTTATATACACAAGAGGACATGGCTAGTTAGCCCT  726

seq1  TTGTAGCACTGGCTTCTTGGTTTGTCACATCAATGATGGCCTTGGGGAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGCACTGGCTTCTTGGTTTGTCACATCAATGATGGCCTTGGGGAAA  776

seq1  CACCTGCAGTTCTTCAGCATCCTGGGGGAGGGGTTTGGAGGTGGAGAAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCAGTTCTTCAGCATCCTGGGGGAGGGGTTTGGAGGTGGAGAAGA  826

seq1  ATTCAGGAAGGCAGCCAAGACCATACTTGGTTTTGGAGACAAGTTCAAGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGAAGGCAGCCAAGACCATACTTGGTTTTGGAGACAAGTTCAAGT  876

seq1  TTATGCCTGTAACATGGGACTTCAAGAACAGACTTCTCTGGGTAGAGAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCCTGTAACATGGGACTTCAAGAACAGACTTCTCTGGGTAGAGAAA  926

seq1  GTGCAAGAAATCACGTAGTTTGGTAGTTCTTGCTGTTTGCCTTTAGTTTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAGAAATCACGTAGTTTGGTAGTTCTTGCTGTTTGCCTTTAGTTTC  976

seq1  TAGAACTTCTGAGAATCTGATGAAGACCATCAACTCTTCCCCAGGTCACT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTTCTGAGAATCTGATGAAGACCATCAACTCTTCCCCAGGTCACT  1026

seq1  TGCACATGCACATTGGCCCTTTTCTCACCAGCAGCTTTCTCAAAGTAGCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATGCACATTGGCCCTTTTCTCACCAGCAGCTTTCTCAAAGTAGCC  1076

seq1  CACAATTATGCCTTAGGGTATGGTGACATTCTAGCTTGGGCTTGGCTCAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTATGCCTTAGGGTATGGTGACATTCTAGCTTGGGCTTGGCTCAG  1126

seq1  CTCTTCTTTTGCCTAATAAATGGGAATTC  1177
      |||||||||||||||||||||||||||||
seq2  CTCTTCTTTTGCCTAATAAATGGGAATTC  1155

seq1: chr3_154384194_154385245
seq2: B6Ng01-029O21.g_66_1110

seq1  GAATTCACTCAGGTGTTTCTCAGTCACATCCAGCATTCCTTCCCATCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCAGGTGTTTCTCAGTCACATCCAGCATTCCTTCCCATCTCT  50

seq1  TCGTAGATGAGGGAGGGAAGATGCCCCTGAGCTGGGGTGGCTTTTGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTAGATGAGGGAGGGAAGATGCCCCTGAGCTGGGGTGGCTTTTGAAGG  100

seq1  ATATCCCTATAGCTCTGGCTAGGTGGGGTGGGGACTATGGTTCAATGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCCTATAGCTCTGGCTAGGTGGGGTGGGGACTATGGTTCAATGCTA  150

seq1  CCTCAGCTTTCAGTAGCCAAAGTGCCAACCTTTTCCTGAAGGGAAAGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCTTTCAGTAGCCAAAGTGCCAACCTTTTCCTGAAGGGAAAGGTA  200

seq1  TGAATTCCAATGAGCTCTGCATGTAGGGACAGAGGCACACACCCTTATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCCAATGAGCTCTGCATGTAGGGACAGAGGCACACACCCTTATCT  250

seq1  TAAACCAAGCAGCTCGGACACGATTGTTTTTACAAGTATGTTGTCTGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAAGCAGCTCGGACACGATTGTTTTTACAAGTATGTTGTCTGGGT  300

seq1  GTTAATTTATGAGAATCAATGAAAGTATCTATCATGTAAAATTAGAATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTTATGAGAATCAATGAAAGTATCTATCATGTAAAATTAGAATGC  350

seq1  TTATGTTTAGGTGTCTATGTTTAGACAGTTTGCTGGGTTCTGTATCACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTTAGGTGTCTATGTTTAGACAGTTTGCTGGGTTCTGTATCACAC  400

seq1  TTGATTCAACAGCATGTATACAGAACAGCTATTTAGTGGAGAAAGTAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCAACAGCATGTATACAGAACAGCTATTTAGTGGAGAAAGTAACT  450

seq1  TTCCCAAATGAAATCTTATTTGGGTGGCCTAGCAAACAACACATGGGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAATGAAATCTTATTTGGGTGGCCTAGCAAACAACACATGGGGTG  500

seq1  GACCAAGAATGCAGACCCCACAGCTAGCTGAGGAGGGTGCTACTGGACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGAATGCAGACCCCACAGCTAGCTGAGGAGGGTGCTACTGGACAG  550

seq1  GTGTTATTTTGTGTATACACTGATCCTGGGTCTCTGTTGAGACACTGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTATTTTGTGTATACACTGATCCTGGGTCTCTGTTGAGACACTGAAT  600

seq1  AATCTTACATAACAGCTTGGAATGGGGACTTAAATAATGGATTCTGTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTACATAACAGCTTGGAATGGGGACTTAAATAATGGATTCTGTCCC  650

seq1  TGCTGTAATGTAGTCTCCCCTTAGCTTGATCAGTCTGAGAGAACTGTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTAATGTAGTCTCCCCTTAGCTTGATCAGTCTGAGAGAACTGTTCA  700

seq1  AGACTGAAGAGTGGCTTTGTTAGGAGCTACCATGAGGTGCAGCAGCCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAAGAGTGGCTTTGTTAGGAGCTACCATGAGGTGCAGCAGCCAGA  750

seq1  GGGATTTATCCAGGCTATCAAAGATCTGTCTTCAGTGGTGTGTGATTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTATCCAGGCTATCAAAGATCTGTCTTCAGTGGTGTGTGATTCTG  800

seq1  TGAAACGAGAATAGGTTTTAGGTTTCCGTAGAGAATAAATAAAAGCATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACGAGAATAGGTTTTAGGTTTCCGTAGAGAATAAATAAAAGCATCC  850

seq1  GTTTGTACTTTT-GGAATAGCTCACTCGCTGAAATGTGGCATTTGTTAAT  899
      |||||||||||| |||||||||||||||||||||||||||||||||||| 
seq2  GTTTGTACTTTTGGGAATAGCTCACTCGCTGAAATGTGGCATTTGTTAA-  899

seq1  TTTTTTTGCTTCTTGAAAATTAAGAATAACAATAAAGATGATGGAAGAAT  949
      ||||||||||||||||||||| |||   ||| ||||||||||||||||||
seq2  TTTTTTTGCTTCTTGAAAATT-AGA--TACATTAAAGATGATGGAAGAAT  946

seq1  GGGGCTAAGAGCATCCTTTTAGTCCCAAAGTAATTCCCAGTGCTTGTTGT  999
      |||||| |||||||||||||||||||||||| |||| ||||||||| |||
seq2  GGGGCT-AGAGCATCCTTTTAGTCCCAAAGT-ATTCTCAGTGCTTG-TGT  993

seq1  AGTCAGGTTTGTAAAGTCTGAGGC-ACAGTGAGCTGCTTTAATG-CACCC  1047
      ||||| | |||| ||||||||||| |||||||||||| |||||| ||| |
seq2  AGTCA-GCTTGT-AAGTCTGAGGCTACAGTGAGCTGC-TTAATGCCACTC  1040

seq1  ACGGA  1052
      |||||
seq2  ACGGA  1045