BAC Information

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BAC

Clone NameB6Ng01-029P10
Chromosome3 (Build37)
Map Location 121,265,966 - 121,415,774
singlet/doubletdoublet
Overlap geneA730020M07Rik, 4930432M17Rik
Upstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3, Slc44a3
Downstream geneF3, Abcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029P10.bB6Ng01-029P10.g
ACCDH860010DH860011
length1,178700
definitionDH860010|Mus musculus domesticus DNA, BAC clone: B6Ng01-029P10, 5' end.DH860011|Mus musculus domesticus DNA, BAC clone: B6Ng01-029P10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,414,562 - 121,415,774)(121,265,966 - 121,266,662)
sequence
gaattcagctttgcttgctttgttgattccaaagactttaattaatgttg
acatagtgttcaattaacactgagggagggtgcagaagaatcctctggga
agttgatctgtcctttcccacacctgttcgactgccccagccacttcagt
aaacaaaaccagccaaagtgacaaacacgcctcccccttccccaggtcaa
cccaaccctcaagtttatttcccacatgctcatctgaatgacatgtgatg
ttctaacttgggtggataagccagcggcaaccgttggtatttattacact
aagccccactgatgtcttcaggtgttgaaagtaacaaaagacctcaacaa
atgtcacaattacacagctgtttcagagtcactccaggcaggttctaaac
aaatgccctcagagtgaggcagcaggactgtgcaggtggcatgggttagg
aggttagccccagtcaggcatggaggagacctcgagagccaggctggcct
cccaggcaacccctcagagttccaggttccaaatccccatgaggcaaagg
cttgggaagatctcagcatgactacagcagtgcggtgctttctggaaaca
gacaagtcctgtacaacatgttacttgatagcccacatcctgggggtaag
tggtgacacccagccggctaccttcttgattatgctttggatatatttct
ttgtgtataaaaaaagaattcaacttttcaaaacaaactggaattccagg
aagcaaaatttctacactaaaaatgcctagatttggatgtgactcattct
gtcttacaaaacagagtgtatctgtaccttcagaccctgaagtagcaccc
aaggaatgcattttgtacaggaaaaaaaaaagaattccatgaaaggatga
ctataatcctttatcaccacatgaacccaaaaagggagaggggtagacaa
gagtttttcaagtgatatttaaaatattaaaggcagaatagataatagtc
tttcctgtgttaaattacattggtatttttaatcagcataattgaacaga
gaaatcgactcactggaagaaatatatctggctcttcctctcgcttgttt
ccaatggggaagaacggacctgtgagccatgctgaaaggaaacagaggga
gcctttctagtctcaagctagatgcctt
gaattcacagtcgtcaaggaggtacagacaatgctttccgagatttaact
aaagagggaagcctaccctgcatgccggtggtatcatcccctgggctgac
taaaaatatgagaggagggagtgagctcagcatgaggattcgtctctctc
tgcttcctgattgtccatcaaagtgagtggctgccttggctgtctgtcac
cacatcttccctccacaacaggctgtctcctgtcaacctgggccccttcg
ttctttaaagcccttttgccaggcattttgtaatagcagtgaaaaaggta
actgatgcatcccatttctggtttcacttccatgccttggggaggaagga
gaaggtgagcagaaggtccacccacctccattcacccctctccatgtttg
taccagggaccacagtgatggaagggacatgggatgggacatcggcagaa
ggtttcgatgctgggttttggcacatagctgtgcttatttcagaggacag
ggatgttgcttacagatgttgaatgcttgagtttcatttcagtggggagg
ctaagtctccgtgagaatagtaattgggactttcaaaagtcctttacagt
catctaagcatgtgagtaatatattgttgtgaaacacagcatgccattat
ccctctcccgagctcttaaacaaatatatttacactaataatgtctatgt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_121414562_121415774
seq2: B6Ng01-029P10.b_42_1219 (reverse)

seq1  AAGGCATCTAGCTTCTGCAGGACCTGAAAAGCTTCCTCCTGCTTCTCTTC  50
      ||||||||||||||      |||  |||| ||| ||| ||| ||| ||| 
seq2  AAGGCATCTAGCTT----GAGACTAGAAAGGCTCCCT-CTGTTTC-CTT-  43

seq1  TCAGCCATGGAGACCTCAC-GCTCCGTCTCTCCCCATCTGAAACAAGGCA  99
      |||| |||||    ||||| | |||||   |||||||  ||||||||   
seq2  TCAG-CATGG----CTCACAGGTCCGTTCTTCCCCATTGGAAACAAG--C  86

seq1  GAGAGGGAGAGCAGGATATTATTTTCTTTACAGTGAAGTCTGATTTCCTC  149
      |||||| |||||  |||| |||||   || ||||| |||| ||||| |||
seq2  GAGAGGAAGAGCCAGATA-TATTT--CTTCCAGTG-AGTC-GATTT-CTC  130

seq1  TTGTTCAATTAATGCTTGATTTAAAAATACCAATGTAATTTAACACAGGA  199
       ||||||||| |||| ||| ||||||||||||||||||||||||||||||
seq2  -TGTTCAATT-ATGC-TGA-TTAAAAATACCAATGTAATTTAACACAGGA  176

seq1  AGGACTATTATCTATTTCTGGCCTTTTAATAATTTTAAAATATACACTTG  249
      | |||||||||||| |||||  | |||||||  ||| |||||| ||||||
seq2  AAGACTATTATCTA-TTCTG--CCTTTAATA--TTTTAAATAT-CACTTG  220

seq1  AAAAACTCTTTGTCTACCCCTCTCCCCTTTTTTGGGTTCATGTGGGTGAT  299
      |||||||| |||||||||||||||||  ||||||||||||||| ||||||
seq2  AAAAACTC-TTGTCTACCCCTCTCCC--TTTTTGGGTTCATGT-GGTGAT  266

seq1  TAAGGATTATAGTCATTCCTTTCATGGTATTCTTTTTTTTTTTCCTGTAC  349
       |||||||||||||| ||||||||||| |||| |||||||||||||||||
seq2  AAAGGATTATAGTCA-TCCTTTCATGGAATTC-TTTTTTTTTTCCTGTAC  314

seq1  AAAATTGCATTCCTTGGGTGCTACTTCAGGGTCTGAAGGTACAGATACAC  399
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAA-TGCATTCCTTGGGTGCTACTTCAGGGTCTGAAGGTACAGATACAC  363

seq1  TCTGTTTTGTAAGACAGAATGAGTCACATCCAAATCTAGGCATTTTTAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTGTAAGACAGAATGAGTCACATCCAAATCTAGGCATTTTTAGT  413

seq1  GTAGAAATTTTGCTTCCTGGAATTCCAGTTTGTTTTGAAAAGTTGAATTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAATTTTGCTTCCTGGAATTCCAGTTTGTTTTGAAAAGTTGAATTC  463

seq1  -TTTTTTATACACAAAGAAATATATCCAAAGCATAATCAAGAAGGTAGCC  548
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATACACAAAGAAATATATCCAAAGCATAATCAAGAAGGTAGCC  513

seq1  GGCTGGGTGTCACCACTTACCCCCAGGATGTGGGCTATCAAGTAACATGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGTGTCACCACTTACCCCCAGGATGTGGGCTATCAAGTAACATGT  563

seq1  TGTACAGGACTTGTCTGTTTCCAGAAAGCACCGCACTGCTGTAGTCATGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGGACTTGTCTGTTTCCAGAAAGCACCGCACTGCTGTAGTCATGC  613

seq1  TGAGATCTTCCCAAGCCTTTGCCTCATGGGGATTTGGAACCTGGAACTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCTTCCCAAGCCTTTGCCTCATGGGGATTTGGAACCTGGAACTCT  663

seq1  GAGGGGTTGCCTGGGAGGCCAGCCTGGCTCTCGAGGTCTCCTCCATGCCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTTGCCTGGGAGGCCAGCCTGGCTCTCGAGGTCTCCTCCATGCCT  713

seq1  GACTGGGGCTAACCTCCTAACCCATGCCACCTGCACAGTCCTGCTGCCTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGGCTAACCTCCTAACCCATGCCACCTGCACAGTCCTGCTGCCTC  763

seq1  ACTCTGAGGGCATTTGTTTAGAACCTGCCTGGAGTGACTCTGAAACAGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAGGGCATTTGTTTAGAACCTGCCTGGAGTGACTCTGAAACAGCT  813

seq1  GTGTAATTGTGACATTTGTTGAGGTCTTTTGTTACTTTCAACACCTGAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATTGTGACATTTGTTGAGGTCTTTTGTTACTTTCAACACCTGAAG  863

seq1  ACATCAGTGGGGCTTAGTGTAATAAATACCAACGGTTGCCGCTGGCTTAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGTGGGGCTTAGTGTAATAAATACCAACGGTTGCCGCTGGCTTAT  913

seq1  CCACCCAAGTTAGAACATCACATGTCATTCAGATGAGCATGTGGGAAATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCAAGTTAGAACATCACATGTCATTCAGATGAGCATGTGGGAAATA  963

seq1  AACTTGAGGGTTGGGTTGACCTGGGGAAGGGGGAGGCGTGTTTGTCACTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAGGGTTGGGTTGACCTGGGGAAGGGGGAGGCGTGTTTGTCACTT  1013

seq1  TGGCTGGTTTTGTTTACTGAAGTGGCTGGGGCAGTCGAACAGGTGTGGGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGTTTTGTTTACTGAAGTGGCTGGGGCAGTCGAACAGGTGTGGGA  1063

seq1  AAGGACAGATCAACTTCCCAGAGGATTCTTCTGCACCCTCCCTCAGTGTT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAGATCAACTTCCCAGAGGATTCTTCTGCACCCTCCCTCAGTGTT  1113

seq1  AATTGAACACTATGTCAACATTAATTAAAGTCTTTGGAATCAACAAAGCA  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAACACTATGTCAACATTAATTAAAGTCTTTGGAATCAACAAAGCA  1163

seq1  AGCAAAGCTGAATTC  1213
      |||||||||||||||
seq2  AGCAAAGCTGAATTC  1178

seq1: chr3_121265966_121266662
seq2: B6Ng01-029P10.g_66_765

seq1  GAATTCACAGTCGTCAAGGAGGTACAGACAATGCTTTCCGAGATTTAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTCGTCAAGGAGGTACAGACAATGCTTTCCGAGATTTAACT  50

seq1  AAAGAGGGAAGCCTACCCTGCATGCCGGTGGTATCATCCCCTGGGCTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGGAAGCCTACCCTGCATGCCGGTGGTATCATCCCCTGGGCTGAC  100

seq1  TAAAAATATGAGAGGAGGGAGTGAGCTCAGCATGAGGATTCGTCTCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATATGAGAGGAGGGAGTGAGCTCAGCATGAGGATTCGTCTCTCTC  150

seq1  TGCTTCCTGATTGTCCATCAAAGTGAGTGGCTGCCTTGGCTGTCTGTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTGATTGTCCATCAAAGTGAGTGGCTGCCTTGGCTGTCTGTCAC  200

seq1  CACATCTTCCCTCCACAACAGGCTGTCTCCTGTCAACCTGGGCCCCTTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTTCCCTCCACAACAGGCTGTCTCCTGTCAACCTGGGCCCCTTCG  250

seq1  TTCTTTAAAGCCCTTTTGCCAGGCATTTTGTAATAGCAGTGAAAAAGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAAAGCCCTTTTGCCAGGCATTTTGTAATAGCAGTGAAAAAGGTA  300

seq1  ACTGATGCATCCCATTTCTGGTTTCACTTCCATGCCTTGGGGAGGAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGCATCCCATTTCTGGTTTCACTTCCATGCCTTGGGGAGGAAGGA  350

seq1  GAAGGTGAGCAGAAGGTCCACCCACCTCCATTCACCCCTCTCCATGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGAGCAGAAGGTCCACCCACCTCCATTCACCCCTCTCCATGTTTG  400

seq1  TACCAGGGACCACAGTGATGGAAGGGACATGGGATGGGACATCGGCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGGACCACAGTGATGGAAGGGACATGGGATGGGACATCGGCAGAA  450

seq1  GGTTTCGATGCTGGGTTTTGGCACATAGCTGTGCTTATTTCAGAGGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCGATGCTGGGTTTTGGCACATAGCTGTGCTTATTTCAGAGGACAG  500

seq1  GGATGTTGCTTACAGATGTTGAATGCTTGAG-TTCATTTCAGTGGGGAGG  549
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGATGTTGCTTACAGATGTTGAATGCTTGAGTTTCATTTCAGTGGGGAGG  550

seq1  CTAAGTCTCCGTGAGAATAGTAATTGGGACTTTCAAAAGTCCTTTACAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTAAGTCTCCGTGAGAATAGTAATTGGGACTTTCAAAAGTCCTTTACAGT  600

seq1  CATCTAAGCATGTGAGTAATATATTGTTGTGAAACACAGCATGCCATTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAAGCATGTGAGTAATATATTGTTGTGAAACACAGCATGCCATTAT  650

seq1  -CCTCTCCCGAGCTCTTAAACAAATATA-TTACACTAATAATGTCTATGT  697
       ||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCCTCTCCCGAGCTCTTAAACAAATATATTTACACTAATAATGTCTATGT  700