BAC Information

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BAC

Clone NameB6Ng01-029P12
Chromosome3 (Build37)
Map Location 121,265,966 - 121,415,774
singlet/doubletdoublet
Overlap geneA730020M07Rik, 4930432M17Rik
Upstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3, Slc44a3
Downstream geneF3, Abcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029P12.bB6Ng01-029P12.g
ACCDH860014DH860015
length1,106902
definitionDH860014|Mus musculus domesticus DNA, BAC clone: B6Ng01-029P12, 5' end.DH860015|Mus musculus domesticus DNA, BAC clone: B6Ng01-029P12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,414,639 - 121,415,774)(121,265,966 - 121,266,869)
sequence
gaattcagctttgcttgctttgttgattccaaagactttaattaatgttg
acatagtgttcaattaacactgagggagggtgcagaagaatcctctggga
agttgatctgtcctttcccacacctgttcgactgccccagccacttcagt
aaacaaaaccagccaaagtgacaaacacgcctcccccttccccaggtcaa
cccaaccctcaagtttatttcccacatgctcatctgaatgacatgtgatg
ttctaacttgggtggataagccagcggcaaccgttggtatttattacact
aagccccactgatgtcttcaggtgttgaaagtaacaaaagacctcaacaa
atgtcacaattacacagctgtttcagagtcactccaggcaggttctaaac
aaatgccctcagagtgaggcagcaggactgtgcaggtggcatgggttagg
aggttagccccagtcaggcatggaggagacctcgagagccaggctggcct
cccaggcaacccctcagagttccaggttccaaatccccatgaggcaaagg
cttgggaagatctcagcatgactacagcagtgcggtgctttctggaaaca
gacaagtcctgtacaacatgttacttgatagcccacatcctgggggtaag
tggtgacacccagccggctaccttcttgattatgctttggatatatttct
ttgtgtataaaaaagaattcaacttttcaaaacaaactggaattccagga
agcaaaatttctacactaaaaatgcctagatttggatgtgactcattctg
tcttacaaaacagagtgtatctgtaccttcagaccctgaagtagcaccca
aggaatgcaattttgtacaggaaaaaaaaaaagaataccatgaaaggaat
gactataatccttaatcaccacatgactcaaaaagggagaggggtagaca
agagttttcagtgtatattttaaattattaaaagccagaaatagataata
gtccttctgtgtaattacattggtatttttaatcagcatattgacagaga
atcaactcactgtaagaaaataaattctgccttccctctgctgttcaatg
gggaga
gaattcacagtcgtcaaggaggtacagacaatgctttccgagatttaact
aaagagggaagcctaccctgcatgccggtggtatcatcccctgggctgac
taaaaatatgagaggagggagtgagctcagcatgaggattcgtctctctc
tgcttcctgattgtccatcaaagtgagtggctgccttggctgtctgtcac
cacatcttccctccacaacaggctgtctcctgtcaacctgggccccttcg
ttctttaaagcccttttgccaggcattttgtaatagcagtgaaaaaggta
actgatgcatcccatttctggtttcacttccatgccttggggaggaagga
gaaggtgagcagaaggtccacccacctccattcacccctctccatgtttg
taccagggaccacagtgatggaagggacatgggatgggacatcggcagaa
ggtttcgatgctgggttttggcacatagctgtgcttatttcagaggacag
ggatgttgcttacagatgttgaatgcttgagttcatttcagtggggaggc
taagtctccgtgagaatagtaattgggactttcaaaagtcctttacagcc
atctaagcatgtgagtaatatattgttgtgaaacacagcatgccattatc
ctctcccgagctcttaaacaaatatattacactaataatgtctatgtctt
tgaaagattgttctccccctccgccagtattaggataatgggaaatgtaa
caaccctgtaaagaaagctgaattttgtacagtactggcatgtggctttt
taacaagggcttattcatttaatttatgtgcatgggtagtttgcccacct
gtatgctgtgcatctcctgtgtgcctgctgtgcacactagaatcagtatc
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_121414639_121415774
seq2: B6Ng01-029P12.b_44_1149 (reverse)

seq1  TCTCCCCATCTGAAACAAGGCAG-AGAGGGAGAGCAGGATATTATTTTCT  49
      ||||||||| ||||      ||| |||||||  |||| || |||||||| 
seq2  TCTCCCCAT-TGAA------CAGCAGAGGGAAGGCAGAAT-TTATTTTC-  41

seq1  TTACAGTGAAGTCTGATTTCCTCTTGTTCAATTAATGCTTGATTTAAAAA  99
      |||||||| ||| |||||  ||||   |||||  |||| ||| |||||||
seq2  TTACAGTG-AGT-TGATT--CTCT--GTCAAT--ATGC-TGA-TTAAAAA  81

seq1  TACCAATGTAATTTAACACAGGAAGGACTATTATCTATTTCTGGCCTTTT  149
      |||||||||||||  ||||| ||||||||||||||||||||||| |||||
seq2  TACCAATGTAATT--ACACA-GAAGGACTATTATCTATTTCTGG-CTTTT  127

seq1  AATAATTTTAAAATATACACTTGAAAAACTCTTTGTCTACCCCTCTCCCC  199
      ||||| |||||||||||||||   ||||||| ||||||||||||||||| 
seq2  AATAA-TTTAAAATATACACT--GAAAACTC-TTGTCTACCCCTCTCCC-  172

seq1  TTTTTTGGGTTCATGTGGGTGATTAAGGATTATAGTCATTCCTTTCATGG  249
       |||||| | |||||| |||||||||||||||||||||||||||||||||
seq2  -TTTTTGAG-TCATGT-GGTGATTAAGGATTATAGTCATTCCTTTCATGG  219

seq1  TATTCTTTTTTTTTTTCCTGTACAAAATTGCATTCCTTGGGTGCTACTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTTTTTTTTTCCTGTACAAAATTGCATTCCTTGGGTGCTACTTC  269

seq1  AGGGTCTGAAGGTACAGATACACTCTGTTTTGTAAGACAGAATGAGTCAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTGAAGGTACAGATACACTCTGTTTTGTAAGACAGAATGAGTCAC  319

seq1  ATCCAAATCTAGGCATTTTTAGTGTAGAAATTTTGCTTCCTGGAATTCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAATCTAGGCATTTTTAGTGTAGAAATTTTGCTTCCTGGAATTCCA  369

seq1  GTTTGTTTTGAAAAGTTGAATTCTTTTTTATACACAAAGAAATATATCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTGAAAAGTTGAATTCTTTTTTATACACAAAGAAATATATCCA  419

seq1  AAGCATAATCAAGAAGGTAGCCGGCTGGGTGTCACCACTTACCCCCAGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATAATCAAGAAGGTAGCCGGCTGGGTGTCACCACTTACCCCCAGGA  469

seq1  TGTGGGCTATCAAGTAACATGTTGTACAGGACTTGTCTGTTTCCAGAAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCTATCAAGTAACATGTTGTACAGGACTTGTCTGTTTCCAGAAAG  519

seq1  CACCGCACTGCTGTAGTCATGCTGAGATCTTCCCAAGCCTTTGCCTCATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGCACTGCTGTAGTCATGCTGAGATCTTCCCAAGCCTTTGCCTCATG  569

seq1  GGGATTTGGAACCTGGAACTCTGAGGGGTTGCCTGGGAGGCCAGCCTGGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTGGAACCTGGAACTCTGAGGGGTTGCCTGGGAGGCCAGCCTGGC  619

seq1  TCTCGAGGTCTCCTCCATGCCTGACTGGGGCTAACCTCCTAACCCATGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGAGGTCTCCTCCATGCCTGACTGGGGCTAACCTCCTAACCCATGCC  669

seq1  ACCTGCACAGTCCTGCTGCCTCACTCTGAGGGCATTTGTTTAGAACCTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCACAGTCCTGCTGCCTCACTCTGAGGGCATTTGTTTAGAACCTGC  719

seq1  CTGGAGTGACTCTGAAACAGCTGTGTAATTGTGACATTTGTTGAGGTCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTGACTCTGAAACAGCTGTGTAATTGTGACATTTGTTGAGGTCTT  769

seq1  TTGTTACTTTCAACACCTGAAGACATCAGTGGGGCTTAGTGTAATAAATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACTTTCAACACCTGAAGACATCAGTGGGGCTTAGTGTAATAAATA  819

seq1  CCAACGGTTGCCGCTGGCTTATCCACCCAAGTTAGAACATCACATGTCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACGGTTGCCGCTGGCTTATCCACCCAAGTTAGAACATCACATGTCAT  869

seq1  TCAGATGAGCATGTGGGAAATAAACTTGAGGGTTGGGTTGACCTGGGGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGAGCATGTGGGAAATAAACTTGAGGGTTGGGTTGACCTGGGGAA  919

seq1  GGGGGAGGCGTGTTTGTCACTTTGGCTGGTTTTGTTTACTGAAGTGGCTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGGCGTGTTTGTCACTTTGGCTGGTTTTGTTTACTGAAGTGGCTG  969

seq1  GGGCAGTCGAACAGGTGTGGGAAAGGACAGATCAACTTCCCAGAGGATTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTCGAACAGGTGTGGGAAAGGACAGATCAACTTCCCAGAGGATTC  1019

seq1  TTCTGCACCCTCCCTCAGTGTTAATTGAACACTATGTCAACATTAATTAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCACCCTCCCTCAGTGTTAATTGAACACTATGTCAACATTAATTAA  1069

seq1  AGTCTTTGGAATCAACAAAGCAAGCAAAGCTGAATTC  1136
      |||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTGGAATCAACAAAGCAAGCAAAGCTGAATTC  1106

seq1: chr3_121265966_121266869
seq2: B6Ng01-029P12.g_67_967

seq1  GAATTCACAGTCGTCAAGGAGGTACAGACAATGCTTTCCGAGATTTAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTCGTCAAGGAGGTACAGACAATGCTTTCCGAGATTTAACT  50

seq1  AAAGAGGGAAGCCTACCCTGCATGCCGGTGGTATCATCCCCTGGGCTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGGAAGCCTACCCTGCATGCCGGTGGTATCATCCCCTGGGCTGAC  100

seq1  TAAAAATATGAGAGGAGGGAGTGAGCTCAGCATGAGGATTCGTCTCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATATGAGAGGAGGGAGTGAGCTCAGCATGAGGATTCGTCTCTCTC  150

seq1  TGCTTCCTGATTGTCCATCAAAGTGAGTGGCTGCCTTGGCTGTCTGTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTGATTGTCCATCAAAGTGAGTGGCTGCCTTGGCTGTCTGTCAC  200

seq1  CACATCTTCCCTCCACAACAGGCTGTCTCCTGTCAACCTGGGCCCCTTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTTCCCTCCACAACAGGCTGTCTCCTGTCAACCTGGGCCCCTTCG  250

seq1  TTCTTTAAAGCCCTTTTGCCAGGCATTTTGTAATAGCAGTGAAAAAGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAAAGCCCTTTTGCCAGGCATTTTGTAATAGCAGTGAAAAAGGTA  300

seq1  ACTGATGCATCCCATTTCTGGTTTCACTTCCATGCCTTGGGGAGGAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGCATCCCATTTCTGGTTTCACTTCCATGCCTTGGGGAGGAAGGA  350

seq1  GAAGGTGAGCAGAAGGTCCACCCACCTCCATTCACCCCTCTCCATGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGAGCAGAAGGTCCACCCACCTCCATTCACCCCTCTCCATGTTTG  400

seq1  TACCAGGGACCACAGTGATGGAAGGGACATGGGATGGGACATCGGCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGGACCACAGTGATGGAAGGGACATGGGATGGGACATCGGCAGAA  450

seq1  GGTTTCGATGCTGGGTTTTGGCACATAGCTGTGCTTATTTCAGAGGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCGATGCTGGGTTTTGGCACATAGCTGTGCTTATTTCAGAGGACAG  500

seq1  GGATGTTGCTTACAGATGTTGAATGCTTGAGTTCATTTCAGTGGGGAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTGCTTACAGATGTTGAATGCTTGAGTTCATTTCAGTGGGGAGGC  550

seq1  TAAGTCTCCGTGAGAATAGTAATTGGGACTTTCAAAAGTCCTTTACAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTCCGTGAGAATAGTAATTGGGACTTTCAAAAGTCCTTTACAGCC  600

seq1  ATCTAAGCATGTGAGTAATATATTGTTGTGAAACACAGCATGCCATTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGCATGTGAGTAATATATTGTTGTGAAACACAGCATGCCATTATC  650

seq1  CTCTCCCGAGCTCTTAAACAAATATATTACACTAATAATGTCTATGTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCGAGCTCTTAAACAAATATATTACACTAATAATGTCTATGTCTT  700

seq1  TGAAAGATTGTTCTCCCCCTCCGCCAGTATTAGGATAATGGGAAATGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGATTGTTCTCCCCCTCCGCCAGTATTAGGATAATGGGAAATGTAA  750

seq1  CAACCCTGTAAAGAAAGCTGAATTTTGTACAGTACTGGCATGTGGCTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCTGTAAAGAAAGCTGAATTTTGTACAGTACTGGCATGTGGCTTTT  800

seq1  TAACAAGGGCTTATTCATTTAATTTTATGTGCATGGGTAGTTTGCCCACC  850
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TAACAAGGGCTTATTCATTTAA-TTTATGTGCATGGGTAGTTTGCCCACC  849

seq1  TGTATGCCTGTGCATCTCCTGTGTGCCTGCTGTGCACACTAGAAGTCAGT  900
      |||||| ||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTATG-CTGTGCATCTCCTGTGTGCCTGCTGTGCACACTAGAA-TCAGT  897

seq1  ATCA  904
      ||||
seq2  ATCA  901