BAC Information

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BAC

Clone NameB6Ng01-030A13
Chromosome3 (Build37)10 (Build37)
Map Location 41,059,445 - 41,059,737111,798,784 - 111,799,845
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030A13.bB6Ng01-030A13.g
ACCDH860059DH860060
length2871,050
definitionDH860059|Mus musculus domesticus DNA, BAC clone: B6Ng01-030A13, 5' end.DH860060|Mus musculus domesticus DNA, BAC clone: B6Ng01-030A13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,445 - 41,059,737)(111,798,784 - 111,799,845)
sequence
tttgtttagctctgagccccatttttaatggggttatttgactttctgga
gtccaccttcttgagttctttatatatattggatattagtcccctatctg
atttaagataggtaaagatcctttcccaatctgttggtggcctttttgtc
ttattgacggggtcttttgccttgcagaagctttgcagtttcatgaggtc
ccatttgtcaatcctcgatcttacagcacaagccattgctgttctattca
ggaaaatttcccctgtgcccatatcttcaaggttttc
gaattctaaagatgtttatgacctagttgaaaagaacaatgtgtatgtaa
gctactgatacagagtcttaattgttataattaaaagtattaaagcaaca
tgacctaagtaaggtgggaaacttgaaatagaaatgaatacaggcatgtt
atataattatgtaatacatatcatatgtaaaatgtgttgtgattagtgat
atcacacacacacatagagacatatatagagagataccatatatatataa
aatgtctctctctatggtatttaggacctattatgtaatgacacctcaga
tccaattagacaagtttcatatatgtaaaccatgacatatggccctaaaa
ggataaacagacaaagttgcatcttgtagattgtatcaaaaataatggtt
agcaaatcgtggacactacaaagagttgaaaactgttgtatagacttgct
gattttagcaagctgtgtgagatttccttctgcctctctgcctctctgcc
tctctgcctctctctctctctttctgactctgtctctgtctgtctgtctg
tctctctccatatatatgtatatacacacacatatatagcccaaccaatt
tctaagttattaaactggcatgagtatgtcttctcagatgttacagaaca
gtgagacatgaaggttagaattttatgatattttaattttataaatattt
ttctggtatctgagtactattgccactcaaactttttttttttttttttt
cgtttttcaagacagggtttctctgtgtagccctggctgtcctggaactc
actttgtagaccaggctggcctcaaattcagaaatttacctgcctctgcc
tcccaagtgctgggattaaagtgtgcgccacccctctaacattttttcat
ccttatttttctgcatgagccttgcgtatgggcgaagatttctagagtat
tttctgtcatctcagtccattttttgcagatcttctctacatcttctttt
ctaaatcttatactaaggaaaatttgttctgtcaggacatacaattcact

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059445_41059737
seq2: B6Ng01-030A13.b_46_337 (reverse)

seq1  GAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAG  50
      ||||| |||||||||||||| |||||||||||  |||||| |||||||||
seq2  GAAAA-CCTTGAAGATATGGGCACAGGGGAAATTTTCCTGAATAGAACAG  49

seq1  CAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAA  100
      ||||||||||||||||||||| ||| || |||||||||||||||||||||
seq2  CAATGGCTTGTGCTGTAAGATCGAGGATTGACAAATGGGACCTCATGAAA  99

seq1  CTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-C  149
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  CTGCAAAGCTTCTGCAAGGCAAAAGACCCCGTCAATAAGACAAAAAGGCC  149

seq1  ACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGAC  199
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACCAACAGATTGGGAAAGGATCTTTACCTATCTTAAATCAGATAGGGGAC  199

seq1  TAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCA  249
      ||||||||||||||||| ||||||||||||||||||| |||||||| |||
seq2  TAATATCCAATATATATAAAGAACTCAAGAAGGTGGACTCCAGAAAGTCA  249

seq1  AATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  293
      |||||||||||| |||||||||||||||||||||||||||||||
seq2  AATAACCCCATT-AAAAATGGGGCTCAGAGCTAAACAAAGAATT  292

seq1: chr10_111798784_111799845
seq2: B6Ng01-030A13.g_65_1114

seq1  GAATTCTAAAGATGTTTATGACCTAGTTGAAAAGAACAATGTGTATGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAGATGTTTATGACCTAGTTGAAAAGAACAATGTGTATGTAA  50

seq1  GCTACTGATACAGAGTCTTAATTGTTATAATTAAAAGTATTAAAGCAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTGATACAGAGTCTTAATTGTTATAATTAAAAGTATTAAAGCAACA  100

seq1  TGACCTAAGTAAGGTGGGAAACTTGAAATAGAAATGAATACAGGCATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTAAGTAAGGTGGGAAACTTGAAATAGAAATGAATACAGGCATGTT  150

seq1  ATATAATTATGTAATACATATCATATGTAAAATGTGTTGTGATTAGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATTATGTAATACATATCATATGTAAAATGTGTTGTGATTAGTGAT  200

seq1  ATCACACACACACATAGAGACATATATAGAGAGATACCATATATATATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACACACACATAGAGACATATATAGAGAGATACCATATATATATAA  250

seq1  AATGTCTCTCTCTATGGTATTTAGGACCTATTATGTAATGACACCTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTCTCTCTATGGTATTTAGGACCTATTATGTAATGACACCTCAGA  300

seq1  TCCAATTAGACAAGTTTCATATATGTAAACCATGACATATGGCCCTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTAGACAAGTTTCATATATGTAAACCATGACATATGGCCCTAAAA  350

seq1  GGATAAACAGACAAAGTTGCATCTTGTAGATTGTATCAAAAATAATGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAACAGACAAAGTTGCATCTTGTAGATTGTATCAAAAATAATGGTT  400

seq1  AGCAAATCGTGGACACTACAAAGAGTTGAAAACTGTTGTATAGACTTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATCGTGGACACTACAAAGAGTTGAAAACTGTTGTATAGACTTGCT  450

seq1  GATTTTAGCAAGCTGTGTGAGATTTCCTTCTGCCTCTCTGCCTCTCTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAGCAAGCTGTGTGAGATTTCCTTCTGCCTCTCTGCCTCTCTGCC  500

seq1  TCTCTGCCTCTCTCTCTCTCTTTCTGACTCTGTCTCTGTCTGTCTGTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCTCTCTCTCTCTCTTTCTGACTCTGTCTCTGTCTGTCTGTCTG  550

seq1  TCTCTCTCCATATATATGTATATACACACACATATATAGCCCAACCAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCCATATATATGTATATACACACACATATATAGCCCAACCAATT  600

seq1  TCTAAGTTATTAAACTGGCATGAGTATGTCTTCTCAGATGTTACAGAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTTATTAAACTGGCATGAGTATGTCTTCTCAGATGTTACAGAACA  650

seq1  GTGAGACATGAAGGTTAGAATTTTATGATATTTTAATTTTATAAATATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACATGAAGGTTAGAATTTTATGATATTTTAATTTTATAAATATTT  700

seq1  TTCTGGTATCTGAGTACTATTGCCACTCAAACTTTTTTTTTTTTTTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTATCTGAGTACTATTGCCACTCAAACTTTTTTTTTTTTTTTTTT  750

seq1  CGTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTC  800

seq1  ACTTTGTAGACCAGGCTGGCCTCAAATTCAGAAATTTACCTGCCTCTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTAGACCAGGCTGGCCTCAAATTCAGAAATTTACCTGCCTCTGCC  850

seq1  TCCCAAGTGCTGGGATTAAAGGTGTGCGCCACCACCTCTAACATTTTTTC  900
      |||||||||||||||||||| |||||||||||| ||||||||||||||||
seq2  TCCCAAGTGCTGGGATTAAA-GTGTGCGCCACC-CCTCTAACATTTTTTC  898

seq1  ATCCTTATTTTTCTGCATGAGCCTTGCGTTATGGCCG-AGATTTCTAAGA  949
      |||||||||||||||||||||||||||| ||||| || |||||||| |||
seq2  ATCCTTATTTTTCTGCATGAGCCTTGCG-TATGGGCGAAGATTTCT-AGA  946

seq1  GTAATTTTCTGTCATCTTCCAGTCCATTTCTCTGCAGTTCCTTCTCTTAC  999
      || ||||||||||||||  |||||||||| | ||||| | |||||| |||
seq2  GT-ATTTTCTGTCATCT--CAGTCCATTT-TTTGCAGAT-CTTCTC-TAC  990

seq1  ATTCTTCTTTTCTAAATCTTATACATAGGATATTTTGTTCTGTCAGGCAC  1049
      | ||||||||||||||||||||||  |||| | |||||||||||||| ||
seq2  A-TCTTCTTTTCTAAATCTTATACTAAGGAAAATTTGTTCTGTCAGG-AC  1038

seq1  TATACAATTCACT  1062
       ||||||||||||
seq2  -ATACAATTCACT  1050