BAC Information

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BAC

Clone NameB6Ng01-030B16
Chromosome3 (Build37)
Map Location 70,720,441 - 70,853,469
singlet/doubletdoublet
Overlap genenone
Upstream geneGm414, LOC100041384, LOC625868, LOC670542, EG625901
Downstream geneEG667377, LOC667385
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030B16.bB6Ng01-030B16.g
ACCDH860108DH860109
length1,1741,032
definitionDH860108|Mus musculus domesticus DNA, BAC clone: B6Ng01-030B16, 5' end.DH860109|Mus musculus domesticus DNA, BAC clone: B6Ng01-030B16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,852,268 - 70,853,469)(70,720,441 - 70,721,489)
sequence
gaattcaagttaactaacaggccagtacctaggaccattttccaggttac
ctcccagaaaatcctgtgtctagcaccagtttccgggttattccccaaga
aatctccaccttgaggttacaagactgcccctgatacttcacttcccaaa
aacaccaatcaggaggaaaataaaagttaagtttatggttttggcctcag
ttgcaaccaattatgttaaaggtcattatgccccccccccagtcagatgt
gtaccaaccctacacacccattcttgcctttataaatgtttgcctgaaat
tgggcttgaggtccccttctgttctcttatgtcagagacagtggtgtggc
ccaagttcaagtttgaataaagatatcctaatctgattgtatgggattca
gctccttggtgatctttttgaggttcacaaatgttttctggcaaaacagc
catcgttcttgtttgatgtagtggctcattttgtcactggagtgcattta
ctaactagttttacttaacatttacaatatacctgttggctattgcatga
cttatccttaaaactattctaatttattatgtaaataatatcttgttttc
ttattgtataaaaattttaccacaatcacaaggtattactttaaactatc
tttcacttttaagtttcttattttatattttttatatagggtaaagacag
tgctatatttagcaatgaacgtaaagcatatctgtcccattttttcatct
tcattgtttcactgggttgttagtgtctttgacttcacttaattctgcac
aggtgctataaaagggtcaaatttatttgaaagctcatgttctcttaaac
taattccatcataacaatcatagttttattggtgtcactttatttctggt
atttgcaaataccaacaaatcaatggttcattatgtttgctttcaaaaga
ggtacaggacccaatctgaagacactactagagtccctgtatgtttattt
cacacttagaatgactctacttacaatagttatgttaaaccgcttgcaat
attaggcagtgcaggcagttgagttaacacatctatcaaacactagttaa
ttgctaacaaaaattataaaaaaacctttggcacatcttcaatccagtta
agaagactttaacacccaaaaatt
gaattcctaagagatgattctaaaaatgtcaagaaacactcaacgaagtg
ttcaatgtccttagtcatcagggaaaggcaaacaaatataaacctgagtt
ttccttcagtatggttaagacctttttttcctttactcttttacctgggt
catttaaagtaacctgtgttccaggtttcagatttgtaattttccttgct
aacaactgaatttttattgctgctttattaatcatttcctagagttattt
gattcgctttaaagatgttttcctcatgatgaacttatttttcttgagtt
gatattgatctctacattgttttgtagctcactggcttatttaatatgtc
tattttgaaatctttttcaggcagttcatagatatacactgtctgctaag
agtaaccaatgtcttattttgcgaggtggctacttttattgactattttc
agttttccagccttgaattagtgtctgcattctaagatgacagtcacttc
tttcaattgcagttttcaaattgttattagcagggaaatatcatctcaga
aacctctctagaagtttcaggtaggccacttggtaacgactacagttggc
tttcttctggaagtttctgtcaagctggcatggaacatgatgctgtagag
aaatgcctggagaggagcaacatgggggagattacgacacgaatgtcctt
cctgtgctcttaagagatgctttgctatcctttggttcccttctgtgcag
cagtttctgttctgtattatctgatgttaccaaactgtttctgtacatag
atggttgctaaaacatgatagttttataagaacaatacattttatgcctt
gctgatgacgtgcttgctaataaaccgaaagatatttaaagacatgtaat
ttattatatcatacttgtggactctggagactagtgataacattccatgc
taaaggttttccctttaaagagggaacatgaagagattgcattggaagtc
atggtaatcagtgggctcctatttccgattag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_70852268_70853469
seq2: B6Ng01-030B16.b_46_1219 (reverse)

seq1  AATTTTATGAGTGTTAAATGTTTTTCTTTAAACTGGTAATTGAAGATGTG  50
      |||||| || ||||||||   | |||||  ||||||  ||||||||||||
seq2  AATTTT-TGGGTGTTAAA--GTCTTCTT--AACTGG--ATTGAAGATGTG  43

seq1  CTAAATGTTTTTTTTTTTTTATTTTTTTTTTTTTTGCTAAATTCAACTAT  100
      | ||| |||||||        | |  ||||| || ||  |||| ||||| 
seq2  CCAAAGGTTTTTT--------TATAATTTTTGTTAGC--AATT-AACTAG  82

seq1  GTTTTGATAGAATGTGTTTTACTTCAACTG-CTGCACTGCCTAATATATG  149
        |||||||||   ||| |||  ||||||| |||||||||||||||| ||
seq2  TGTTTGATAGA---TGTGTTAACTCAACTGCCTGCACTGCCTAATAT-TG  128

seq1  C-AGCGTTTTAACATAACTATTGTAAGTAGAGATCATTTCTAGTGTTGAA  198
      | |||| ||||||||||||||||||||||||| |||||   |||||   |
seq2  CAAGCGGTTTAACATAACTATTGTAAGTAGAG-TCATTCTAAGTGT--GA  175

seq1  AATAAACATACAGGGACTCTAGTAGTTGTCTTCAGATTGGGTCCCTTGTA  248
      ||||||||||||||||||||||||| ||||||||||||||||||  ||| 
seq2  AATAAACATACAGGGACTCTAGTAG-TGTCTTCAGATTGGGTCC--TGT-  221

seq1  ACCTCTTTTGAAAGC-AACATAATGATACATTGATTTGTTTGTATTTGCA  297
      ||||||||||||||| ||||||||||  |||||||||||| |||||||||
seq2  ACCTCTTTTGAAAGCAAACATAATGAACCATTGATTTGTTGGTATTTGCA  271

seq1  AATATCAAGAAATAAAGTGACACCAATAAAACTATGATTGTTATGATGGA  347
      |||| | |||||||||||||||||||||||||||||||||||||||||||
seq2  AATA-CCAGAAATAAAGTGACACCAATAAAACTATGATTGTTATGATGGA  320

seq1  ATTAGTTTTAAGAGAACATGAGCTTTCAAATTAATTTTGACCCTTTTATA  397
      ||||| |||||||||||||||||||||||| ||| |||||||||||||||
seq2  ATTAG-TTTAAGAGAACATGAGCTTTCAAA-TAAATTTGACCCTTTTATA  368

seq1  GCACCTGTGCAGAATTAAGTGAAGTCAAAGACACTAACAACCCAGTGAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGTGCAGAATTAAGTGAAGTCAAAGACACTAACAACCCAGTGAAA  418

seq1  CAATGAAGATGAAAAAATGGGACAGATATGCTTTACGTTCATTGCTAAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAGATGAAAAAATGGGACAGATATGCTTTACGTTCATTGCTAAAT  468

seq1  ATAGCACTGTCTTTA-CCTATATAAAAAATATAAAATAAGAAACTTAAAA  546
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATAGCACTGTCTTTACCCTATATAAAAAATATAAAATAAGAAACTTAAAA  518

seq1  GTGAAAGATAGTTTAAAGTAATACCTTGTGATTGTGGTAAAATTTTTATA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGATAGTTTAAAGTAATACCTTGTGATTGTGGTAAAATTTTTATA  568

seq1  CAATAAGAAAACAAGATATTATTTACATAATAAATTAGAATAGTTTTAAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGAAAACAAGATATTATTTACATAATAAATTAGAATAGTTTTAAG  618

seq1  GATAAGTCATGCAATAGCCAACAGGTATATTGTAAATGTTAAGTAAAACT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTCATGCAATAGCCAACAGGTATATTGTAAATGTTAAGTAAAACT  668

seq1  AGTTAGTAAATGCACTCCAGTGACAAAATGAGCCACTACATCAAACAAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGTAAATGCACTCCAGTGACAAAATGAGCCACTACATCAAACAAGA  718

seq1  ACGATGGCTGTTTTGCCAGAAAACATTTGTGAACCTCAAAAAGATCACCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGGCTGTTTTGCCAGAAAACATTTGTGAACCTCAAAAAGATCACCA  768

seq1  AGGAGCTGAATCCCATACAATCAGATTAGGATATCTTTATTCAAACTTGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTGAATCCCATACAATCAGATTAGGATATCTTTATTCAAACTTGA  818

seq1  ACTTGGGCCACACCACTGTCTCTGACATAAGAGAACAGAAGGGGACCTCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGCCACACCACTGTCTCTGACATAAGAGAACAGAAGGGGACCTCA  868

seq1  AGCCCAATTTCAGGCAAACATTTATAAAGGCAAGAATGGGTGTGTAGGGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAATTTCAGGCAAACATTTATAAAGGCAAGAATGGGTGTGTAGGGT  918

seq1  TGGTACACATCTGACTGGGGGGGGGGCATAATGACCTTTAACATAATTGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACACATCTGACTGGGGGGGGGGCATAATGACCTTTAACATAATTGG  968

seq1  TTGCAACTGAGGCCAAAACCATAAACTTAACTTTTATTTTCCTCCTGATT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAACTGAGGCCAAAACCATAAACTTAACTTTTATTTTCCTCCTGATT  1018

seq1  GGTGTTTTTGGGAAGTGAAGTATCAGGGGCAGTCTTGTAACCTCAAGGTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTTTGGGAAGTGAAGTATCAGGGGCAGTCTTGTAACCTCAAGGTG  1068

seq1  GAGATTTCTTGGGGAATAACCCGGAAACTGGTGCTAGACACAGGATTTTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTCTTGGGGAATAACCCGGAAACTGGTGCTAGACACAGGATTTTC  1118

seq1  TGGGAGGTAACCTGGAAAATGGTCCTAGGTACTGGCCTGTTAGTTAACTT  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGTAACCTGGAAAATGGTCCTAGGTACTGGCCTGTTAGTTAACTT  1168

seq1  GAATTC  1202
      ||||||
seq2  GAATTC  1174

seq1: chr3_70720441_70721489
seq2: B6Ng01-030B16.g_69_1100

seq1  GAATTCCTAAGAGATGATTCTAAAAATGTCAAGAAACACTCAACGAAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAGAGATGATTCTAAAAATGTCAAGAAACACTCAACGAAGTG  50

seq1  TTCAATGTCCTTAGTCATCAGGGAAAGGCAAACAAATATAAACCTGAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGTCCTTAGTCATCAGGGAAAGGCAAACAAATATAAACCTGAGTT  100

seq1  TTCCTTCAGTATGGTTAAGACCTTTTTTTCCTTTACTCTTTTACCTGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCAGTATGGTTAAGACCTTTTTTTCCTTTACTCTTTTACCTGGGT  150

seq1  CATTTAAAGTAACCTGTGTTCCAGGTTTCAGATTTGTAATTTTCCTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAAGTAACCTGTGTTCCAGGTTTCAGATTTGTAATTTTCCTTGCT  200

seq1  AACAACTGAATTTTTATTGCTGCTTTATTAATCATTTCCTAGAGTTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTGAATTTTTATTGCTGCTTTATTAATCATTTCCTAGAGTTATTT  250

seq1  GATTCGCTTTAAAGATGTTTTCCTCATGATGAACTTATTTTTCTTGAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCGCTTTAAAGATGTTTTCCTCATGATGAACTTATTTTTCTTGAGTT  300

seq1  GATATTGATCTCTACATTGTTTTGTAGCTCACTGGCTTATTTAATATGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGATCTCTACATTGTTTTGTAGCTCACTGGCTTATTTAATATGTC  350

seq1  TATTTTGAAATCTTTTTCAGGCAGTTCATAGATATACACTGTCTGCTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGAAATCTTTTTCAGGCAGTTCATAGATATACACTGTCTGCTAAG  400

seq1  AGTAACCAATGTCTTATTTTGCGAGGTGGCTACTTTTATTGACTATTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACCAATGTCTTATTTTGCGAGGTGGCTACTTTTATTGACTATTTTC  450

seq1  AGTTTTCCAGCCTTGAATTAGTGTCTGCATTCTAAGATGACAGTCACTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCCAGCCTTGAATTAGTGTCTGCATTCTAAGATGACAGTCACTTC  500

seq1  TTTCAATTGCAGTTTTCAAATTGTTATTAGCAGGGAAATATCATCTCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTGCAGTTTTCAAATTGTTATTAGCAGGGAAATATCATCTCAGA  550

seq1  AACCTCTCTAGAAGTTTCAGGTAGGCCACTTGGTAACGACTACAGTTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTCTAGAAGTTTCAGGTAGGCCACTTGGTAACGACTACAGTTGGC  600

seq1  TTTCTTCTGGAAGTTTCTGTCAAGCTGGCATGGAACATGATGCTGTAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTGGAAGTTTCTGTCAAGCTGGCATGGAACATGATGCTGTAGAG  650

seq1  AAATGCCTGGAGAGGAGCAACATGGGGGAGATTACGACACGAATGTCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCTGGAGAGGAGCAACATGGGGGAGATTACGACACGAATGTCCTT  700

seq1  CCTGTGCTCTTAAGAGATGCTTTGCTATTCCTTTGGTTCCCTTCTGTGCA  750
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCTGTGCTCTTAAGAGATGCTTTGCTA-TCCTTTGGTTCCCTTCTGTGCA  749

seq1  GCAGTTTCTGTTCTGTATTATCTGATGTTACCAAAACTGTTTCTGTACAT  800
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCAGTTTCTGTTCTGTATTATCTGATGTTACC-AAACTGTTTCTGTACAT  798

seq1  AGATGGTTGCTAAAACATGATAGTTTTATAAGAACAATAACATTTTATTG  850
      |||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  AGATGGTTGCTAAAACATGATAGTTTTATAAGAACAAT-ACATTTTA-TG  846

seq1  CCTTGCTGATGACGTGCTTGCTAAATAAAACCGAAAAGATATTTAAAGAC  900
      ||||||||||||||||||||||||   |||||| ||||||||||||||||
seq2  CCTTGCTGATGACGTGCTTGCTAA--TAAACCG-AAAGATATTTAAAGAC  893

seq1  ATTGTAATTTTATTAATATCATACTTGTGGACTCTGGAGACTAGTGAATA  950
      | ||||| |||||| ||||||||||||||||||||||||||||||||   
seq2  A-TGTAA-TTTATT-ATATCATACTTGTGGACTCTGGAGACTAGTGA--T  938

seq1  AACATTCCATGCTAAAGGTTTTCCCTTTAAAGAGGGAAACATTGAAGAGA  1000
      |||||||||||||||||||||||||||||||||||| |||| ||||||| 
seq2  AACATTCCATGCTAAAGGTTTTCCCTTTAAAGAGGG-AACA-TGAAGAG-  985

seq1  ATTGCATTTGAAAGTCATGTAAATCAGTGGGCTCCTATTTTCAGATTAG  1049
      |||||| ||| ||||||||  |||||||||||||||| |||| ||||||
seq2  ATTGCA-TTGGAAGTCATGGTAATCAGTGGGCTCCTA-TTTCCGATTAG  1032