BAC Information

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BAC

Clone NameB6Ng01-030F04
Chromosome3 (Build37)
Map Location 134,933,722 - 135,088,543
singlet/doubletdoublet
Overlap geneCenpe, Bdh2, C80638, 4933425K02Rik, Zcd2
Upstream genePpia-ps3_1390.1, LOC100039234, Tacr3, LOC229837, LOC100039290, EG620439
Downstream geneUbe2d3, Manba, LOC668745, Nfkb1, ENSMUSG00000045520, Slc39a8, LOC100039350, LOC383923, Bank1, LOC100039477, LOC668868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030F04.bB6Ng01-030F04.g
ACCDH860266DH860267
length1,1111,144
definitionDH860266|Mus musculus domesticus DNA, BAC clone: B6Ng01-030F04, 5' end.DH860267|Mus musculus domesticus DNA, BAC clone: B6Ng01-030F04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,933,722 - 134,934,869)(135,087,345 - 135,088,543)
sequence
gaattctccaaagtctcctaaagtgactcggacagattctaaaaggagac
agaacacaacttctcagtgcagggcacaaaatctccaggatcctgtgcca
aaagattccccaaaatcatggttttttgataaccggtcaaagtctcttcc
agcacctcacccgatccgctattttgacaactccagtctagggctgtgcc
caggtaggtagccgctcaggttgctgggtgtcactgggaataagagatga
atcccgtgtgtttggttcatctgctcagctgtgagaactcacggtcctgt
tgtcgcggtgtggttacttcacagttacatggtatgcacccgactccatt
tcactgtgttgccctgccactgcgggtatctcagtcctccacctgctgtc
aggggaggaggagtcatttccacacttccagaagcaccacagctgactct
tcagccactcaagtctgcgctcagctcaaagcttctcaaagacaactaga
tgtcctgtgacacacgtatttttgaagtccttcctttatctgtgagagag
tcattcccagacctccaggaaactaaaatcctggagggcataaagtccta
tgcactattttttcctgtgcatacaaattatagttacatttcccctattt
acttaaaggaggtgacattagcttgttcagactgccaacatcactagtgg
tatattgtgggttactaagtgaatcagagtttgttggatgcaagctctaa
cccaggactgcaaccatatactactctcattgtacagttgattaccaacc
aatgtagtatttttaaaactagttcaaaacttgagaggcaagcacttgct
actcttgcaagaagaccagggttggccgggcgtggtggcccacgccttta
atcccagcactcgggagacagggcaggcggatttctgagttcgaggcagc
tggtctacagagtgagttcagacagcagggctaccagagaaccctgtctc
gaatcaacaagacagacgacgacagggttacactccagcccacatgcagc
tcctactggtactgcattcaggatcttctgactgaggcaccggggtgagt
gtgctatgcag
gaattcaaaaacattcaaaggaaaacaacaattgcagtggtggtattgcc
aactgtggctctaaagaatactgagtctctctgggtattagacataccct
atgtggtgacaagggtgtctgagtgtgctgaattgttgagtctctctggg
tattagacataccctatatggtgacactggtgtctgagtacactgaattg
taatctggcacttgaatatttgtgtttctaagacaggtttctacctttta
tcccaaatgaaaaactgtagaggtcttaagaatgtcattcaacatagcct
attttgtccttgtcatgatgaattaaaagaaatatccaatgtcctttcgc
agacattcttcagtgtaccctatgttcaacttacctcctacttcaaccat
ttccacaaggacggtatacctgattagcagaggtaatacagttcagaggg
caagaatgcttaaatttcactccttttaagacaaacaactttgggacctt
ttttccttcagacaaaaacaaacaaaacaaaacaaataaacaaaaaacct
aacctcccaaaaggaatggaaatatggaaatcctaatggaaacagtaatc
ttttaaatcaccactttttggtgtatcatttgctatgccatagctcatag
acatgttctatatccaaaaaccttcaattatccaattgtacttggtcaat
ctgatcaggttaaaaatgatagtaattttaaaaaaacttttcatcacctg
ctacttttctttttagtgttttagtgaaaaaaatgatcagagttaaattt
aaacagttcaaagaacagtttacttttcttttttttttttagattttttt
ttaaattaggtattttcctcgtttacatttcaatgctatcccaaaggtcc
ccatacccaccccccccaacagtttactttcaacttaaataccacaaaaa
aataaagctgatacagctcgtgtacgtgggctacaaatgctgaatgttaa
agaacctgatgtcaagttcagatactttacaggtactgctctggcctcct
agctatgactgtgctgttaagaattaccggaacaggatatgaagacagag
ttttattataaagatgatcctcaggaagagaccatgaactatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_134933722_134934869
seq2: B6Ng01-030F04.b_50_1160

seq1  GAATTCTCCAAAGTCTCCTAAAGTGACTCGGACAGATTCTAAAAGGAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAAAGTCTCCTAAAGTGACTCGGACAGATTCTAAAAGGAGAC  50

seq1  AGAACACAACTTCTCAGTGCAGGGCACAAAATCTCCAGGATCCTGTGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACAACTTCTCAGTGCAGGGCACAAAATCTCCAGGATCCTGTGCCA  100

seq1  AAAGATTCCCCAAAATCATGGTTTTTTGATAACCGGTCAAAGTCTCTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTCCCCAAAATCATGGTTTTTTGATAACCGGTCAAAGTCTCTTCC  150

seq1  AGCACCTCACCCGATCCGCTATTTTGACAACTCCAGTCTAGGGCTGTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTCACCCGATCCGCTATTTTGACAACTCCAGTCTAGGGCTGTGCC  200

seq1  CAGGTAGGTAGCCGCTCAGGTTGCTGGGTGTCACTGGGAATAAGAGATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGGTAGCCGCTCAGGTTGCTGGGTGTCACTGGGAATAAGAGATGA  250

seq1  ATCCCGTGTGTTTGGTTCATCTGCTCAGCTGTGAGAACTCACGGTCCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCGTGTGTTTGGTTCATCTGCTCAGCTGTGAGAACTCACGGTCCTGT  300

seq1  TGTCGCGGTGTGGTTACTTCACAGTTACATGGTATGCACCCGACTCCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGCGGTGTGGTTACTTCACAGTTACATGGTATGCACCCGACTCCATT  350

seq1  TCACTGTGTTGCCCTGCCACTGCGGGTATCTCAGTCCTCCACCTGCTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTGTTGCCCTGCCACTGCGGGTATCTCAGTCCTCCACCTGCTGTC  400

seq1  AGGGGAGGAGGAGTCATTTCCACACTTCCAGAAGCACCACAGCTGACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGGAGGAGTCATTTCCACACTTCCAGAAGCACCACAGCTGACTCT  450

seq1  TCAGCCACTCAAGTCTGCGCTCAGCTCAAAGCTTCTCAAAGACAACTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCACTCAAGTCTGCGCTCAGCTCAAAGCTTCTCAAAGACAACTAGA  500

seq1  TGTCCTGTGACACACGTATTTTTGAAGTCCTTCCTTTATCTGTGAGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGTGACACACGTATTTTTGAAGTCCTTCCTTTATCTGTGAGAGAG  550

seq1  TCATTCCCAGACCTCCAGGAAACTAAAATCCTGGAGGGCATAAAGTCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCCAGACCTCCAGGAAACTAAAATCCTGGAGGGCATAAAGTCCTA  600

seq1  TGCACTATTTTTTCCTGTGCATACAAATTATAGTTACATTTCCCCTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTATTTTTTCCTGTGCATACAAATTATAGTTACATTTCCCCTATTT  650

seq1  ACTTAAAGGAGGTGACATTAGCTTGTTCAGACTGCCAACATCACTAGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAGGAGGTGACATTAGCTTGTTCAGACTGCCAACATCACTAGTGG  700

seq1  TATATTGTGGGTTACTAAGTGAATCAGAGTTTGTTGGATGCAAGCTCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGTGGGTTACTAAGTGAATCAGAGTTTGTTGGATGCAAGCTCTAA  750

seq1  CCCAGGACTGCAACCATATACTACTCTCATTGTACAGTTGATTACCAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGACTGCAACCATATACTACTCTCATTGTACAGTTGATTACCAACC  800

seq1  AATGTAGTATTTTTAAAAACTAGTTCAAAACTTGAGAGGCAAGCACTTGC  850
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AATGTAGTATTTTT-AAAACTAGTTCAAAACTTGAGAGGCAAGCACTTGC  849

seq1  TACTCTTGCAAGAAGACCAGGGTTGGCCGGGCGTGGTGGCCCACGCCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTGCAAGAAGACCAGGGTTGGCCGGGCGTGGTGGCCCACGCCTTT  899

seq1  AATCCCAGCACTCGGGAGACAGGGGCAGGCGGATTTCTGAGTTCGAGGCC  950
      ||||||||||||||||||||| |||||||||||||||||||||||||| |
seq2  AATCCCAGCACTCGGGAGACA-GGGCAGGCGGATTTCTGAGTTCGAGG-C  947

seq1  AGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAA  1000
      || ||||||||||||||||||||   ||||| ||||||||| ||||| ||
seq2  AG-CTGGTCTACAGAGTGAGTTC--AGACAG-CAGGGCTAC-CAGAG-AA  991

seq1  CCCTGTCTCGAAAAACAAAACAAAAAAGACAAAGACGACGACCAGGGTTA  1050
      ||||||||||        ||  || |||||  ||||||||| ||||||||
seq2  CCCTGTCTCG--------AATCAACAAGAC--AGACGACGA-CAGGGTTA  1030

seq1  CACCCCCAGCCCCACATGGCAGCTCACTACTGTGTAACTGCGATTCCAGA  1100
      || | |||| ||||||| ||||||| |||||| || ||||| ||||   |
seq2  CA-CTCCAG-CCCACAT-GCAGCTC-CTACTG-GT-ACTGC-ATTC---A  1070

seq1  GGATCTTCTGGCTCCTGAGGGCACCGCGTGTGAGTGGTGCATATGCAG  1148
      ||||||||||    |||| ||||||| | |||||| |||| |||||||
seq2  GGATCTTCTG---ACTGA-GGCACCG-GGGTGAGT-GTGC-TATGCAG  1111

seq1: chr3_135087345_135088543
seq2: B6Ng01-030F04.g_68_1211 (reverse)

seq1  CTATAGTGTTCCCTTTGGTCTCTTCTCCCCTTTGTGAGTACCCTACTTTA  50
      |||||  ||||    ||||||||||         |||| | | | |||||
seq2  CTATA--GTTC---ATGGTCTCTTC--------CTGAGGATCAT-CTTTA  36

seq1  TCATTTAATAAACTCTTGTCTTCACTATCCTGTGTCTCGTTTAAATTCTT  100
      | ||     |||||| |||||||| |||||||| ||  ||   |||||||
seq2  TAAT----AAAACTC-TGTCTTCA-TATCCTGT-TCCGGT---AATTCTT  76

seq1  TAAACAGACCACAAGTACTAGAGCTAAGGGAAGGCCAGAGCAAGTACCTG  150
        |||||  ||| |||   | |||||   | |||||||||| ||||||||
seq2  --AACAG--CAC-AGT--CATAGCTA---GGAGGCCAGAGC-AGTACCTG  115

seq1  GTAAAAGTATCCTGGAAACTTGACATCAGTGTTCTGTAACATTCAGCATT  200
         ||||||| |||  ||||||||||||| ||||| ||||||||||||||
seq2  --TAAAGTAT-CTG--AACTTGACATCAG-GTTCTTTAACATTCAGCATT  159

seq1  TGGTATGCCCACGTAACATCGAGCTGTAATCAGCTTTATTTTTTTGTTGG  250
      | ||| |||||||| ||| |||||||| |||||||||||||||||| |||
seq2  T-GTA-GCCCACGT-ACA-CGAGCTGT-ATCAGCTTTATTTTTTTG-TGG  203

seq1  TATTTTAAGTTTGAAAAGTAAACTGTTGGGGGGGGGTGGGTATGGGGGAC  300
      || ||||||||   ||||||||||||| ||||||||||||||| ||||||
seq2  TA-TTTAAGTT--GAAAGTAAACTGTT-GGGGGGGGTGGGTAT-GGGGAC  248

seq1  CTTTGGGATAGCATTGAAAATGTAAACGAGGAAAATACCTAATTTAAAAA  350
      |||||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  CTTTGGGATAGCATTG-AAATGTAAACGAGGAAAATACCTAATTT-AAAA  296

seq1  AAAAATCTAAAAAAAAAAAAAGAAAAGTAAACTGTTCTTTGAACTGTTTA  400
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCT-AAAAAAAAAAAAGAAAAGTAAACTGTTCTTTGAACTGTTTA  345

seq1  AATTTAACTCTGATCATTTTTTTCACTAAAACACTAAAAAGAAAAGTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAACTCTGATCATTTTTTTCACTAAAACACTAAAAAGAAAAGTAGC  395

seq1  AGGTGATGAAAAGTTTTTTTAAAATTACTATCATTTTTAACCTGATCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGATGAAAAGTTTTTTTAAAATTACTATCATTTTTAACCTGATCAGA  445

seq1  TTGACCAAGTACAATTGGATAATTGAAGGTTTTTGGATATAGAACATGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCAAGTACAATTGGATAATTGAAGGTTTTTGGATATAGAACATGTC  495

seq1  TATGAGCTATGGCATAGCAAATGATACACCAAAAAGTGGTGATTTAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGCTATGGCATAGCAAATGATACACCAAAAAGTGGTGATTTAAAAG  545

seq1  ATTACTGTTTCCATTAGGATTTCCATATTTCCATTCCTTTTGGGAGGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGTTTCCATTAGGATTTCCATATTTCCATTCCTTTTGGGAGGTTA  595

seq1  GGTTTTTTGTTTATTTGTTTTGTTTTGTTTGTTTTTGTCTGAAGGAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTGTTTATTTGTTTTGTTTTGTTTGTTTTTGTCTGAAGGAAAAA  645

seq1  AGGTCCCAAAGTTGTTTGTCTTAAAAGGAGTGAAATTTAAGCATTCTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCCAAAGTTGTTTGTCTTAAAAGGAGTGAAATTTAAGCATTCTTGC  695

seq1  CCTCTGAACTGTATTACCTCTGCTAATCAGGTATACCGTCCTTGTGGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAACTGTATTACCTCTGCTAATCAGGTATACCGTCCTTGTGGAAA  745

seq1  TGGTTGAAGTAGGAGGTAAGTTGAACATAGGGTACACTGAAGAATGTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGAAGTAGGAGGTAAGTTGAACATAGGGTACACTGAAGAATGTCTG  795

seq1  CGAAAGGACATTGGATATTTCTTTTAATTCATCATGACAAGGACAAAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAGGACATTGGATATTTCTTTTAATTCATCATGACAAGGACAAAATA  845

seq1  GGCTATGTTGAATGACATTCTTAAGACCTCTACAGTTTTTCATTTGGGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATGTTGAATGACATTCTTAAGACCTCTACAGTTTTTCATTTGGGAT  895

seq1  AAAAGGTAGAAACCTGTCTTAGAAACACAAATATTCAAGTGCCAGATTAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTAGAAACCTGTCTTAGAAACACAAATATTCAAGTGCCAGATTAC  945

seq1  AATTCAGTGTACTCAGACACCAGTGTCACCATATAGGGTATGTCTAATAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGTGTACTCAGACACCAGTGTCACCATATAGGGTATGTCTAATAC  995

seq1  CCAGAGAGACTCAACAATTCAGCACACTCAGACACCCTTGTCACCACATA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAGACTCAACAATTCAGCACACTCAGACACCCTTGTCACCACATA  1045

seq1  GGGTATGTCTAATACCCAGAGAGACTCAGTATTCTTTAGAGCCACAGTTG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATGTCTAATACCCAGAGAGACTCAGTATTCTTTAGAGCCACAGTTG  1095

seq1  GCAATACCACCACTGCAATTGTTGTTTTCCTTTGAATGTTTTTGAATTC  1199
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATACCACCACTGCAATTGTTGTTTTCCTTTGAATGTTTTTGAATTC  1144