BAC Information

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BAC

Clone NameB6Ng01-030G15
Chromosome3 (Build37)
Map Location 93,234,040 - 93,411,964
singlet/doubletdoublet
Overlap geneEG383891, Tchh, Tchhl1, S100a11, S100a10
Upstream geneSprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn
Downstream geneEG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030G15.bB6Ng01-030G15.g
ACCDH860333DH860334
length962951
definitionDH860333|Mus musculus domesticus DNA, BAC clone: B6Ng01-030G15, 5' end.DH860334|Mus musculus domesticus DNA, BAC clone: B6Ng01-030G15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,411,001 - 93,411,964)(93,234,040 - 93,235,006)
sequence
taagtttagatcttaaggtcatggtttctaaagtggagcgatctgtagta
tactggaggttgtcccttttttggccactagaggacaccactttccttgg
ctttggctcctaggccacaattgtgaaagtgtcttggctgttagtccttt
ctctgactttttgtttcttccaaagtgattgggatcccagtgatgctatg
attccacccacagaatacacagatgatcttatctcaagatatcggcactc
cagaagtggatatgggattcaagcttagccttgactgcccagtgagttga
aggtcagcctggcctacaagagaccgtgcctaaaacttaacaaatagata
agtaaatgaatggataaagaaaaattaaattagaaatatatagaggggaa
actgtcgtgataaacatattatcaacaaagtaagcttagacatgtgctgt
aagctcagcttccagacacaagattcttttgggacctagccattattatt
attacaagtttacaaaagtaaattatctagattttcattctctaccccca
agccccaagcagtaatcagttataattttcaaagggaaaaaataatgctg
gtgctgaagagatggttctgtggtttataagtactggctcttcttccaga
ggccctgagttcaattcccagtacctgtatatgggcttaaaaccctatgt
aagtctaggctctctttgtcctacatggaccccacttgcacatgtgtaac
tgatgtcaaacaggcaatacagatacacataagagaaaaataaatttgcc
ctaaattacataagaaaatgtattttagagcttcctccctcagaaagagg
agcttaccaggagtacagttctactcctgcaaggttgacaccaaggcaac
ctggcctgaaactttatttcatatagccataatagtaaaggtaccctctt
tgctttgatatt
gaattcttactggagactcacaaagcataccacaggttctgaaaagcctt
tgcctcaagaataacgaataaatgaataacttgtttccccttagccttga
gttcccagattcactaacactggagcacaagggcctgaatccctgggagg
agtccatgaacccagggctgcagctctctgtacagaacagctaatgccat
ccccaggaagcttcgtccttgccttcctgtcagcgagctcagaagtgctc
accgtctgtgcccacctctaaagcctggaagttggaatcatttctccaga
ttaatttcatcctttgaagaatagagggaaagatgatttttttttttttt
taaaggagagcccagaagcaggggtcgggggaataacatctcttctgctt
ttgatatatcaaattctttttttttttttttttggtttttcgagacaggg
tttctctgtatagccctggttgtcctggaactcactctgtagaccaggct
ggcctcgaactcagaaatccccctgcctctgcctcccaagtgctgggatt
aaaggggtgcgccactacgcccagctcaaattcttgataacacacgtgag
agaaaacaaatttcaaacatctgctcaggtccagattcctaacatccctt
ttcattgttttaaatccctacaccagcatactggctgagaggagaaagcc
cttcctagaccatccaacaagttgcaaccccagctcaagcgctggatgac
ctagggcaggcagcttaacctctccgttgtcccgtcactgaagagcagag
gcagcagcacttccgacaggctggctggatgagattgacatataaacggg
gttgtaaaaccctttgcatgtattcagtgtcctgtaaagctatgattata
atcagctgtgctacagtctgcactccctcatgacatcatctagtcatgct
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_93411001_93411964
seq2: B6Ng01-030G15.b_39_1000 (reverse)

seq1  AATATCAAAGCAAAAGAAGAGTACATTTTACTATTATTGCTATATGAAAT  50
      ||||||||||||||   || ||||  ||||||||||| ||||||||||||
seq2  AATATCAAAGCAAA--GAGGGTAC-CTTTACTATTATGGCTATATGAAAT  47

seq1  AAAGTTTTCAGGCCAGGTTGCCTTGGTGTCACCCTTGCAGGAGTTAGAAC  100
      |||| |||||||||||||||||||||||||| ||||||||||| ||||||
seq2  AAAG-TTTCAGGCCAGGTTGCCTTGGTGTCAACCTTGCAGGAG-TAGAAC  95

seq1  TGTACTCCTGGTTAGCTCCTCTTCCTGAGGGAGGAAGCTCT-AAATACAT  149
      |||||||||||| |||||||||| ||||||||||||||||| ||||||||
seq2  TGTACTCCTGGTAAGCTCCTCTTTCTGAGGGAGGAAGCTCTAAAATACAT  145

seq1  TTTCTAATGTAATTTTGGGC-AATTTATTTTTCTCTTATGTGTATCTGTA  198
      ||||| ||||||||| |||| |||||||||||||||||||||||||||||
seq2  TTTCTTATGTAATTTAGGGCAAATTTATTTTTCTCTTATGTGTATCTGTA  195

seq1  TTGCCTGTTTTGACATCAGTTACACATGTGCAAGTGGGGTCCATGTAGGA  248
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTG-TTTGACATCAGTTACACATGTGCAAGTGGGGTCCATGTAGGA  244

seq1  CAAAGAGAGCCTAGACTTACATAGGGTTTTAAGCCCATATACAGGTACTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGAGCCTAGACTTACATAGGGTTTTAAGCCCATATACAGGTACTG  294

seq1  GGAATTGAACTCAGGGCCTCTGGAAGAAGAGCCAGTACTTAT-AACCACA  347
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGAATTGAACTCAGGGCCTCTGGAAGAAGAGCCAGTACTTATAAACCACA  344

seq1  GAACCATCTCTTCAGCACCAGCATTATTTTTTCCCTTTG-AAATTATAAC  396
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GAACCATCTCTTCAGCACCAGCATTATTTTTTCCCTTTGAAAATTATAAC  394

seq1  TGATTACTGCTTGGGGCTTGGGGGTAGAGAATGAAAATCTAGATAATTTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACTGCTTGGGGCTTGGGGGTAGAGAATGAAAATCTAGATAATTTA  444

seq1  CTTTTGTAAACTTGTAATAATAATAATGGCTAGGTCCCAAAAGAATCTTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTAAACTTGTAATAATAATAATGGCTAGGTCCCAAAAGAATCTTG  494

seq1  TGTCTGGAAGCTGAGCTTACAGCACATGTCTAAGCTTACTTTGTTGATAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGAAGCTGAGCTTACAGCACATGTCTAAGCTTACTTTGTTGATAA  544

seq1  TATGTTTATCACGACAGTTTCCCCTCTATATATTTCTAATTTAATTTTTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTATCACGACAGTTTCCCCTCTATATATTTCTAATTTAATTTTTC  594

seq1  TTTATCCATTCATTTACTTATCTATTTGTTAAGTTTTAGGCACGGTCTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCATTCATTTACTTATCTATTTGTTAAGTTTTAGGCACGGTCTCT  644

seq1  TGTAGGCCAGGCTGACCTTCAACTCACTGGGCAGTCAAGGCTAAGCTTGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCCAGGCTGACCTTCAACTCACTGGGCAGTCAAGGCTAAGCTTGA  694

seq1  ATCCCATATCCACTTCTGGAGTGCCGATATCTTGAGATAAGATCATCTGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATATCCACTTCTGGAGTGCCGATATCTTGAGATAAGATCATCTGT  744

seq1  GTATTCTGTGGGTGGAATCATAGCATCACTGGGATCCCAATCACTTTGGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTGTGGGTGGAATCATAGCATCACTGGGATCCCAATCACTTTGGA  794

seq1  AGAAACAAAAAGTCAGAGAAAGGACTAACAGCCAAGACACTTTCACAATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAAAAAGTCAGAGAAAGGACTAACAGCCAAGACACTTTCACAATT  844

seq1  GTGGCCTAGGAGCCAAAGCCAAGGAAAGTGGTGTCCTCTAGTGGCCAAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTAGGAGCCAAAGCCAAGGAAAGTGGTGTCCTCTAGTGGCCAAAA  894

seq1  AAGGGACAACCTCCAGTATACTACAGATCGCTCCACTTTAGAAACCATGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACAACCTCCAGTATACTACAGATCGCTCCACTTTAGAAACCATGA  944

seq1  CCTTAAGATCTAAACTTA  964
      ||||||||||||||||||
seq2  CCTTAAGATCTAAACTTA  962

seq1: chr3_93234040_93235006
seq2: B6Ng01-030G15.g_66_1016

seq1  GAATTCTTACTGGAGACTCACAAAGCATACCACAGGTTCTGAAAAGCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACTGGAGACTCACAAAGCATACCACAGGTTCTGAAAAGCCTT  50

seq1  TGCCTCAAGAATAACGAATAAATGAATAACTTGTTTCCCCTTAGCCTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAAGAATAACGAATAAATGAATAACTTGTTTCCCCTTAGCCTTGA  100

seq1  GTTCCCAGATTCACTAACACTGGAGCACAAGGGCCTGAATCCCTGGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCAGATTCACTAACACTGGAGCACAAGGGCCTGAATCCCTGGGAGG  150

seq1  AGTCCATGAACCCAGGGCTGCAGCTCTCTGTACAGAACAGCTAATGCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATGAACCCAGGGCTGCAGCTCTCTGTACAGAACAGCTAATGCCAT  200

seq1  CCCCAGGAAGCTTCGTCCTTGCCTTCCTGTCAGCGAGCTCAGAAGTGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGAAGCTTCGTCCTTGCCTTCCTGTCAGCGAGCTCAGAAGTGCTC  250

seq1  ACCGTCTGTGCCCACCTCTAAAGCCTGGAAGTTGGAATCATTTCTCCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTCTGTGCCCACCTCTAAAGCCTGGAAGTTGGAATCATTTCTCCAGA  300

seq1  TTAATTTCATCCTTTGAAGAATAGAGGGAAAGATGATTTTTTTTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCATCCTTTGAAGAATAGAGGGAAAGATGATTTTTTTTTTTTTT  350

seq1  TAAAGGAGAGCCCAGAAGCAGGGGTCGGGGGAATAACATCTCTTCTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAGAGCCCAGAAGCAGGGGTCGGGGGAATAACATCTCTTCTGCTT  400

seq1  TTGATATATCAAATTCTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATATCAAATTCTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGG  450

seq1  TTTCTCTGTATAGCCCTGGTTGTCCTGGAACTCACTCTGTAGACCAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTATAGCCCTGGTTGTCCTGGAACTCACTCTGTAGACCAGGCT  500

seq1  GGCCTCGAACTCAGAAATCCCCCTGCCTCTGCCTCCCAAGTGCTGGGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCGAACTCAGAAATCCCCCTGCCTCTGCCTCCCAAGTGCTGGGATT  550

seq1  AAAGGGGTGCGCCACTACGCCCAGCTCAAATTCTTGATAACACACGTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGTGCGCCACTACGCCCAGCTCAAATTCTTGATAACACACGTGAG  600

seq1  AGAAAACAAATTTCAAACATCTGCTCAGGTCCAGATTCCTAACAT-CCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGAAAACAAATTTCAAACATCTGCTCAGGTCCAGATTCCTAACATCCCTT  650

seq1  TTCATTGTTTTAAATCCCTACACCAGCAGACTGGCTGAGAGGAGAAAGCC  699
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTCATTGTTTTAAATCCCTACACCAGCATACTGGCTGAGAGGAGAAAGCC  700

seq1  CTTCCTAGACCATCCAACAAGTTGCAACCCCAGCTCAGCCGCTGGATGAC  749
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  CTTCCTAGACCATCCAACAAGTTGCAACCCCAGCTCAAGCGCTGGATGAC  750

seq1  CTAGGGCAGGCAGCTTAACCTCTCCGTGGCCCCGTCACCTGAAGAGCAGA  799
      ||||||||||||||||||||||||||| | ||||||| ||||||||||||
seq2  CTAGGGCAGGCAGCTTAACCTCTCCGTTGTCCCGTCA-CTGAAGAGCAGA  799

seq1  GGCAGCAGCACTTCCGACAGGCTGGGCTGGATGAAGAATGACCAATAAAA  849
      ||||||||||||||||||||||| ||||||||| ||| ||||  ||| ||
seq2  GGCAGCAGCACTTCCGACAGGCT-GGCTGGATG-AGATTGAC--ATATAA  845

seq1  ACGGGGTTGTAAAAACCCTTTGCAATGTATTCAGTGTCCTGTAAAAGCTT  899
      |||||||||| |||||||||||| |||||||||||||||||| |||||| 
seq2  ACGGGGTTGT-AAAACCCTTTGC-ATGTATTCAGTGTCCTGT-AAAGCT-  891

seq1  AATGATTATAATCAAGCTGTTGCTACAAGTCTGCAAACTCCCCTCATGAC  949
       |||||||||||| ||||| |||||| |||||||  ||| ||||||||||
seq2  -ATGATTATAATC-AGCTG-TGCTAC-AGTCTGC--ACT-CCCTCATGAC  934

seq1  ACTCATC-AGTCCATGCTG  967
      | ||||| ||| |||||||
seq2  A-TCATCTAGT-CATGCTG  951