BAC Information

Click to search

BAC

Clone NameB6Ng01-030G21
Chromosome3 (Build37)
Map Location 90,548,496 - 90,651,958
singlet/doubletdoublet
Overlap geneLOC329706, EG545541
Upstream geneAdar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4
Downstream geneLOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik, LOC100042463
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030G21.bB6Ng01-030G21.g
ACCDH860343DH860344
length1,0671,052
definitionDH860343|Mus musculus domesticus DNA, BAC clone: B6Ng01-030G21, 5' end.DH860344|Mus musculus domesticus DNA, BAC clone: B6Ng01-030G21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,548,496 - 90,549,440)(90,650,902 - 90,651,958)
sequence
gaattctttttttcagttctgagccccattttttaatggggttatttgat
tttctggagtccaccttcttgagttctttatatatattggatattagtcc
ccaatctgatttaggataggtaaagatcctttcccaatctgttggtgccc
tttttgtcttattgacggtgtcttttgccttgcagaagctttgcagtttc
atgaggtcccattcgtcaattctcaatcttacagcacaagccattgctgt
tctattcaggaatttcccccctgtgcccatatcttcgaggcttttcccta
ctttctcctctataagttttagtgtctctggtcttatgtggagctccttg
atccacttagatttgaccttagtacaaggagataggaatggatcaattca
cattcttctacatgataacaaccagttgtgcaagcagcatttgttgaaaa
tgctgtctttcttccactggatggttttagctcccttgtcaaagatcaag
tgaccataggtgtgtgggttcatttgtgggtcttcaattctattccattg
gtctacttgtctgtcactataccagtaccatgcagtttttatcacaattg
ctctgtagtcaaagagcagagctttaattagtctatttatatcttgtttg
atggggtaattaggtgttggacacaagtagtagttcatagcaagatgatc
aagacctggaaagaacaagtgtagacagcttgtgtttatgtgactatgaa
tgaaaatcagtttgtgatgggcagaatcctttagtatgtgagtgaactga
tttcacttttctcagctccatggatttaatttaaagaggttcctaataaa
tactgtttggtttggtagaaaatcaacacacagtcaaaatgtgcttttct
ttatcaaataaagtgtttatacctgttgctgattgagcagcctgccagtt
acagaggtagtgcatatttccattcaaaatcattaccagaggagaccctt
gtggacccccaccgctggtgaacatccaattaccctggattcctgttcac
ccttggcaatgccatga
gaattcagtcactgataatcagtaattaatcatctgtattatgtgaagcc
ctgttctgagcagtcagttgtagagctgaacctgaaactgacaatattat
tgatggagacacagtattcagaactcagagaactcggtatcttgggagta
cagaggaagatgcgttagagtcctgtgggtgatctgtgctgagtgaagca
gatgtgagtggactagagccaattcctactttgaaattgtgacttttaag
ctgagacttcaattctgaaagtaaacaaacatgaggataatacttgattt
gaagctgagggaatttaagactcagcagggtctcagggtgaacctgaaaa
cctaccatagaacattcagatctctggactatgtggagagaacctagtac
aaatttcacatggagaaagcactgtcaattattcgggatttcctctgctc
aagaaatgaccagtcagttcttggtaaagggattcattttaaaaggtttt
ctattctctattcaaatgtaagccaaccaacagaatcctggaaggaaatt
agtaagacacataaaacaagtctcactgtcagaccattattatactcacc
ccattaggctggtatccaggcttcctagaggtccagataaagtagagaaa
cgccatcttgggaaatattggagacacagagagctccccatacataagga
tctcaggaaaacaaggagctgctttcaggaagacagaggtaaacaaaagc
tctttaggcaactcccctctctgtgaacaatccattaatttgatcagatt
tctcaaatcctaggccaaattagtgtgacagacaggaagcactgatcatg
aagatgggctatttgggtaatggcgggtctttagccaggtatccagacag
tgaggaggagacttgcagctactggtactctctgctaaaatatggatcac
tccacttcacattcttatccctgtctttttcacatacttgaggatagcaa
aacataaccattcttgaaccttcctcaagatcatgggctcctagtttcag
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_90548496_90549440
seq2: B6Ng01-030G21.b_161_1110

seq1  AGGTAAAGATCCTTTCCCAATCTGTTGGTGCCCTTTTTGTCTTATTGACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAAGATCCTTTCCCAATCTGTTGGTGCCCTTTTTGTCTTATTGACG  50

seq1  GTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCATGAGGTCCCATTCGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCATGAGGTCCCATTCGTC  100

seq1  AATTCTCAATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCAATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTCC  150

seq1  CCCCTGTGCCCATATCTTCGAGGCTTTTCCCTACTTTCTCCTCTATAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTGCCCATATCTTCGAGGCTTTTCCCTACTTTCTCCTCTATAAGT  200

seq1  TTTAGTGTCTCTGGTCTTATGTGGAGCTCCTTGATCCACTTAGATTTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGTCTCTGGTCTTATGTGGAGCTCCTTGATCCACTTAGATTTGAC  250

seq1  CTTAGTACAAGGAGATAGGAATGGATCAATTCACATTCTTCTACATGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTACAAGGAGATAGGAATGGATCAATTCACATTCTTCTACATGATA  300

seq1  ACAACCAGTTGTGCAAGCAGCATTTGTTGAAAATGCTGTCTTTCTTCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCAGTTGTGCAAGCAGCATTTGTTGAAAATGCTGTCTTTCTTCCAC  350

seq1  TGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTGG  400

seq1  GTTCATTTGTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTTGTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTCAC  450

seq1  TATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTCAAAGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTCAAAGAGC  500

seq1  AGAGCTTTAATTAGTCTATTTATATCTTGTTTGATGGGGTAATTAGGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTTAATTAGTCTATTTATATCTTGTTTGATGGGGTAATTAGGTGT  550

seq1  TGGACACAAGTAGTAGTTCATAGCAAGATGATCAAGACCTGGAAAGAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACAAGTAGTAGTTCATAGCAAGATGATCAAGACCTGGAAAGAACA  600

seq1  AGTGTAGACAGCTTGTGTTTATGTGACTATGAATGAAAATCAGTTTGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAGACAGCTTGTGTTTATGTGACTATGAATGAAAATCAGTTTGTGA  650

seq1  TGGGCAGAATCC-TTAGTATGTGAGTGAACTGATTTCACTTTCCTCAGCT  699
      |||||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  TGGGCAGAATCCTTTAGTATGTGAGTGAACTGATTTCACTTTTCTCAGCT  700

seq1  CCATGGATTTAATTTAAAGAGGTTCCT-ATAAATACTGTTT-GTGTGGTA  747
      ||||||||||||||||||||||||||| ||||||||||||| || |||||
seq2  CCATGGATTTAATTTAAAGAGGTTCCTAATAAATACTGTTTGGTTTGGTA  750

seq1  G-AAATCAACACACAGTCAAAATGTGCTTTTCCTTATCAAATAAAGTGTT  796
      | |||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAAAATCAACACACAGTCAAAATGTGCTTTTCTTTATCAAATAAAGTGTT  800

seq1  TATCACTGTTGCTGAGTGAGCAGCCTGCCAGTAACAGAGGCTAGTGCCAT  846
      |||  |||||||||| |||||||||||||||| ||||||| ||||| |||
seq2  TATACCTGTTGCTGATTGAGCAGCCTGCCAGTTACAGAGG-TAGTG-CAT  848

seq1  ATTTCCAATCAAAATCATTACCAGA-GAGACTCTTGTGAACACCCACCGC  895
      ||||||| ||||||||||||||||| ||||| |||||| || ||||||||
seq2  ATTTCCATTCAAAATCATTACCAGAGGAGACCCTTGTGGACCCCCACCGC  898

seq1  TTGTGAACAT-CAATTACCATAGATTCCTG-TCACCATAGGCAATGCCAT  943
      | |||||||| |||||||| | |||||||| ||||| | |||||||||||
seq2  TGGTGAACATCCAATTACCCTGGATTCCTGTTCACCCTTGGCAATGCCAT  948

seq1  GA  945
      ||
seq2  GA  950

seq1: chr3_90650902_90651958
seq2: B6Ng01-030G21.g_69_1120 (reverse)

seq1  TTCTGAAAACTAGGAAGCACATGATCTTGA-GAAGGTAC-AGAATGGTAT  48
      ||||| |||||||| ||| ||||||||||| |||||| | |||||||| |
seq2  TTCTG-AAACTAGG-AGCCCATGATCTTGAGGAAGGTTCAAGAATGGT-T  47

seq1  ATGTTTTGCTATCCTCAAAGTATGTGATAAAGACAGGGATAAGAATGTGA  98
      |||||||||||||||| |||||||||| ||||||||||||||||||||||
seq2  ATGTTTTGCTATCCTC-AAGTATGTGAAAAAGACAGGGATAAGAATGTGA  96

seq1  AGTGGAGTGATCCATA-TGTAGCAGAGAGTACCAGTTAGCTGCAAGTCTC  147
      |||||||||||||||| | |||||||||||||||| ||||||||||||||
seq2  AGTGGAGTGATCCATATTTTAGCAGAGAGTACCAG-TAGCTGCAAGTCTC  145

seq1  CTCCTCACTGTCTGGATACCTTGGCTAAAGACCCGCCCATTACCCAATTA  197
      |||||||||||||||||||| |||||||||||||| ||||||||||| ||
seq2  CTCCTCACTGTCTGGATACC-TGGCTAAAGACCCG-CCATTACCCAAATA  193

seq1  GCCCATCTTCATGATCAGTGCTTCCTGTCTGTCACACTAATTTGGCCTAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATCTTCATGATCAGTGCTTCCTGTCTGTCACACTAATTTGGCCTAG  243

seq1  GATTTGAGAAATCTGATCAAATTAATGGATTGTTCACAGAGAGGGGAGTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAGAAATCTGATCAAATTAATGGATTGTTCACAGAGAGGGGAGTT  293

seq1  GCCTAAAGAGCTTTTGTTTACCTTCTGTCTTCCTGAAAGCAGCTCCTTGT  347
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCCTAAAGAGCTTTTGTTTACC-TCTGTCTTCCTGAAAGCAGCTCCTTGT  342

seq1  TTTCCTGAGATCCTTATGTATGGGGAGCTCTCTGTGTCTCCAATATTTCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGAGATCCTTATGTATGGGGAGCTCTCTGTGTCTCCAATATTTCC  392

seq1  CAAGATGGCGTTTCTCTACTTTATCTGGACCTCTAGGAAGCCTGGATACC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGGCGTTTCTCTACTTTATCTGGACCTCTAGGAAGCCTGGATACC  442

seq1  AGCCTAATGGGGTGAGTATAATAATGGTCTGACAGTGAGACTTGTTTTAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAATGGGGTGAGTATAATAATGGTCTGACAGTGAGACTTGTTTTAT  492

seq1  GTGTCTTACTAATTTCCTTCCAGGATTCTGTTGGTTGGCTTACATTTGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTACTAATTTCCTTCCAGGATTCTGTTGGTTGGCTTACATTTGAA  542

seq1  TAGAGAATAGAAAACCTTTTAAAATGAATCCCTTTACCAAGAACTGACTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAATAGAAAACCTTTTAAAATGAATCCCTTTACCAAGAACTGACTG  592

seq1  GTCATTTCTTGAGCAGAGGAAATCCCGAATAATTGACAGTGCTTTCTCCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTCTTGAGCAGAGGAAATCCCGAATAATTGACAGTGCTTTCTCCA  642

seq1  TGTGAAATTTGTACTAGGTTCTCTCCACATAGTCCAGAGATCTGAATGTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAATTTGTACTAGGTTCTCTCCACATAGTCCAGAGATCTGAATGTT  692

seq1  CTATGGTAGGTTTTCAGGTTCACCCTGAGACCCTGCTGAGTCTTAAATTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGTAGGTTTTCAGGTTCACCCTGAGACCCTGCTGAGTCTTAAATTC  742

seq1  CCTCAGCTTCAAATCAAGTATTATCCTCATGTTTGTTTACTTTCAGAATT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCTTCAAATCAAGTATTATCCTCATGTTTGTTTACTTTCAGAATT  792

seq1  GAAGTCTCAGCTTAAAAGTCACAATTTCAAAGTAGGAATTGGCTCTAGTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTCAGCTTAAAAGTCACAATTTCAAAGTAGGAATTGGCTCTAGTC  842

seq1  CACTCACATCTGCTTCACTCAGCACAGATCACCCACAGGACTCTAACGCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACATCTGCTTCACTCAGCACAGATCACCCACAGGACTCTAACGCA  892

seq1  TCTTCCTCTGTACTCCCAAGATACCGAGTTCTCTGAGTTCTGAATACTGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCTGTACTCCCAAGATACCGAGTTCTCTGAGTTCTGAATACTGT  942

seq1  GTCTCCATCAATAATATTGTCAGTTTCAGGTTCAGCTCTACAACTGACTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCATCAATAATATTGTCAGTTTCAGGTTCAGCTCTACAACTGACTG  992

seq1  CTCAGAACAGGGCTTCACATAATACAGATGATTAATTACTGATTATCAGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAACAGGGCTTCACATAATACAGATGATTAATTACTGATTATCAGT  1042

seq1  GACTGAATTC  1057
      ||||||||||
seq2  GACTGAATTC  1052