BAC Information

Click to search

BAC

Clone NameB6Ng01-031H10
Chromosome3 (Build37)
Map Location 72,857,023 - 72,858,137
singlet/doubletsinglet
Overlap geneSlitrk3
Upstream geneLOC100041459, 2010204N08Rik
Downstream geneBche, LOC667425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031H10.bB6Ng01-031H10.g
ACCDH861072DH861073
length1,0001,105
definitionDH861072|Mus musculus domesticus DNA, BAC clone: B6Ng01-031H10, 5' end.DH861073|Mus musculus domesticus DNA, BAC clone: B6Ng01-031H10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagtaggaactcagtaagaaggttctctattcagtaacactcaaa
tttacttctagtagagaaggtgaaactagttaggcattacaaagaacaga
gccagaatagctcagagctggtctgcagagtgtttacttgggacaatagc
cattcttacccagacaagcaaattcacaatggcctagcaaataggtgggt
ttaccatgaaagagttagggaatccccctgagagaggtttcttcactagg
cccaaagaaacagcataaatcaggcatttactaagaagccctggtggtgg
gcataacaatagactagcattacacctggctcccttcttagtggtaaata
gcagcagcctggtccccaccttttttgatgtatacattccttttgtattg
tgtcactgtaactctcctggtttcttgtcactattctgtataaaaagttt
gatgcttgacttgaaaaacttacattgagatcctacacaatctcttgtga
cacatctgtatgtcattcatttgccgactccttgtccacctgcaactaga
gacccgctctatgcagacaggggccaaaaagggtctgtggtaagatctat
tttcaattatctgaggaacctccagattgatttccaccagtttgtaatcc
caccagcaatggaagagtgttcctctttctccaaatcctctccactatgt
cttgtcacctgaggttttgatcttagccattttgattggtgtaaggtgga
atctcagggttattttttgatttgtatttctctgattactaaggactttg
gacatttctttaggtgcttctcagacatttgagattcctcagttgtgaat
tattgggtaagttctatacccattatttgattggggtgtttggtatttgt
gattaattcctgagttcttgtatatttggatatagctctcataggatgtg
ggttagtgagatatttcaatctgaggatgcaattgctatgactaagcctt

gaattcaagagaaagtcagtccaagtcgctgaggatgttttgcctcttat
ttgggacacctagccagtggcagagagtctcagatctttccacctgcagg
atgtgggtaactagctcatcctggccttggacggaagtctgtgaagagaa
aggcccattccaaatatggtttcactgtccaaggcctctgcaccggaggg
gagaaagagaaagcaaaggtctaaggggctgatactcgcccccacctcta
tccacctccttctgtcaacggaatgtttccctcgggttctcttctctttc
tcggtcttgctttattcttttgaatacctctactcttgactgctttactt
cttttagctccccttcatgctcccacgagcacacgctatgcgcgcgcacg
tgcacgcacacacacacacacacacacacacacacacacacacacacaca
attgtatagtcagggcttcttagtgctcgctcccgaccaaaggctaagcg
tgttcccctacttggagcccattttcatgacgggaaatgctggaaggttt
tcggtacacgttaaaaaacaaaccaaatacacagcgaaaaagaaatctaa
atcccgcagtgtgatgtgagcctgccttccccgctggtgcccaacggtgt
agggtaaccggggagagccgctacagaggcggcggcgcgcccagcagcag
cggagctggaagcctgctgcagcctcatctcctccctcctttattgaggg
tgccaagcgtcagtcctgcatcctaaagaagcccattgaagagcccattg
cattctctgcacgtctcaagctagctttttaatttatttttaagggcctt
ccccctctcctccaacccccctagcttcagcaagaggagactggacaaga
agaggatccttaaactcaagctttgtttccttgctgctgtcttttcattc
ttttccatagtccgtggcgagaacaaaaataaaaccaaaatccaaacctc
ctgcaaatagtaagtcaatgattctgctttaagctggttgcccgaagcca
aaattgtgaaacccaaaaaaatttttttattttggttttgagaaggtgag
gagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_72857023_72858137
seq2: B6Ng01-031H10.g_68_1172 (reverse)

seq1  TCCTCCTCACCATTTCAAAAACAAAAATAAAAATGTTTTTCTTGGTTTTC  50
      ||||||||||| | || ||||| ||||||||||  ||||| |||| ||||
seq2  TCCTCCTCACCTTCTC-AAAACCAAAATAAAAAAATTTTT-TTGGGTTTC  48

seq1  ACACTTCTGGGCTTCAGGCAACCAGGCTAAAGCAGATATCATTGACTTAC  100
      ||| || | |||||| |||||||||  ||||||||| |||||||||||| 
seq2  ACAATT-TTGGCTTCGGGCAACCAGCTTAAAGCAGA-ATCATTGACTTA-  95

seq1  CTATTTTGCAGGAGGTTTGGATTTTGGTTTTTATTTTTGTTTCTCGCCAC  150
      ||| ||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  CTA-TTTGCAGGAGGTTTGGATTTTGG-TTTTATTTTTG-TTCTCGCCAC  142

seq1  GGACTATGGAAAAGAATGAAAAGACAAGCAGCAAGGAAAACAAAGCTTGA  200
      ||||||||||||||||||||||||| |||||||||| |||||||||||||
seq2  GGACTATGGAAAAGAATGAAAAGAC-AGCAGCAAGG-AAACAAAGCTTGA  190

seq1  GTTTAAGGATCCTC-TCTTGTCCAGTCTCCTCTTGCTGAAGCTAGGGGGG  249
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTTTAAGGATCCTCTTCTTGTCCAGTCTCCTCTTGCTGAAGCTAGGGGGG  240

seq1  CTGGAGGAGAGGGGGGAAGGCCCTAAAAAATAAATTAAAAAGCTAGCTTG  299
       ||||||||| ||||||||||||| |||||||||||||||||||||||||
seq2  TTGGAGGAGA-GGGGGAAGGCCCTTAAAAATAAATTAAAAAGCTAGCTTG  289

seq1  AGACGTGCAGAGAATGCAATGGGCTCTTCAATGGGCTTCTTTAGGATGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGTGCAGAGAATGCAATGGGCTCTTCAATGGGCTTCTTTAGGATGCA  339

seq1  GGACTGACGCTTGGCACCCTCAATAAAGGAGGGAGGAGATGAGGCTGCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGACGCTTGGCACCCTCAATAAAGGAGGGAGGAGATGAGGCTGCAG  389

seq1  CAGGCTTCCAGCTCCGCTGCTGCTGGGCGCGCCGCCGCCTCTGTAGCGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTCCAGCTCCGCTGCTGCTGGGCGCGCCGCCGCCTCTGTAGCGGC  439

seq1  TCTCCCCGGTTACCCTACACCGTTGGGCACCAGCGGGGAAGGCAGGCTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCGGTTACCCTACACCGTTGGGCACCAGCGGGGAAGGCAGGCTCA  489

seq1  CATCACACTGCGGGATTTAGATTTCTTTTTCGCTGTGTATTTGGTTTGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACACTGCGGGATTTAGATTTCTTTTTCGCTGTGTATTTGGTTTGTT  539

seq1  TTTTAACGTGTACCGAAAACCTTCCAGCATTTCCCGTCATGAAAATGGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACGTGTACCGAAAACCTTCCAGCATTTCCCGTCATGAAAATGGGC  589

seq1  TCCAAGTAGGGGAACACGCTTAGCCTTTGGTCGGGAGCGAGCACTAAGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTAGGGGAACACGCTTAGCCTTTGGTCGGGAGCGAGCACTAAGAA  639

seq1  GCCCTGACTATACAATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGACTATACAATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  689

seq1  TGTGTGTGTGCGTGCACGTGCGCGCGCATAGCGTGTGCTCGTGGGAGCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGCGTGCACGTGCGCGCGCATAGCGTGTGCTCGTGGGAGCAT  739

seq1  GAAGGGGAGCTAAAAGAAGTAAAGCAGTCAAGAGTAGAGGTATTCAAAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGAGCTAAAAGAAGTAAAGCAGTCAAGAGTAGAGGTATTCAAAAG  789

seq1  AATAAAGCAAGACCGAGAAAGAGAAGAGAACCCGAGGGAAACATTCCGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGCAAGACCGAGAAAGAGAAGAGAACCCGAGGGAAACATTCCGTT  839

seq1  GACAGAAGGAGGTGGATAGAGGTGGGGGCGAGTATCAGCCCCTTAGACCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAGGAGGTGGATAGAGGTGGGGGCGAGTATCAGCCCCTTAGACCT  889

seq1  TTGCTTTCTCTTTCTCCCCTCCGGTGCAGAGGCCTTGGACAGTGAAACCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTCTCTTTCTCCCCTCCGGTGCAGAGGCCTTGGACAGTGAAACCA  939

seq1  TATTTGGAATGGGCCTTTCTCTTCACAGACTTCCGTCCAAGGCCAGGATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGAATGGGCCTTTCTCTTCACAGACTTCCGTCCAAGGCCAGGATG  989

seq1  AGCTAGTTACCCACATCCTGCAGGTGGAAAGATCTGAGACTCTCTGCCAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGTTACCCACATCCTGCAGGTGGAAAGATCTGAGACTCTCTGCCAC  1039

seq1  TGGCTAGGTGTCCCAAATAAGAGGCAAAACATCCTCAGCGACTTGGACTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGGTGTCCCAAATAAGAGGCAAAACATCCTCAGCGACTTGGACTG  1089

seq1  ACTTTCTCTTGAATTC  1115
      ||||||||||||||||
seq2  ACTTTCTCTTGAATTC  1105