BAC Information

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BAC

Clone NameB6Ng01-031H19
Chromosome2 (Build37)3 (Build37)
Map Location 142,776,686 - 142,777,698112,948,025 - 112,948,759
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031H19.bB6Ng01-031H19.g
ACCDH861085DH861086
length969736
definitionDH861085|Mus musculus domesticus DNA, BAC clone: B6Ng01-031H19, 5' end.DH861086|Mus musculus domesticus DNA, BAC clone: B6Ng01-031H19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,686 - 142,777,698)(112,948,025 - 112,948,759)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttcagcacaagccattgctgttc
tgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccact
ttctcctctataagtttcagtgtctctggctttaagtgaagttccttgat
ccacttagatttgaccttagtacaaggagataagtatggatcgattcgca
ttcttctacatgataacaaccagttgtgccagcaccaattgttgaaaatg
ctgtctttcttccactggatggttttagctcccttgtcgaagatcaagtg
accataggtgtgtgggttcatttctgggtcttcaattctattccattggt
ctacttgtctgtctctataccagtaccatgcagtttttaccacaattgct
ctttagtaaagctttaggtcaggcatggtgataccaccagaggttctttt
atccttgagaagagtttttgctatcctaggttttttgttattccagatga
atttgcaaattgctccttctaattcgttgaagaattgagttggaattttg
atggggattgcattgaatctgtagatttcttttggcaagatagccatttt
tacatgttgatcctgccaatccatgagcatgggacatctttccatcttct
gagatcttctttcatttctttcttcagagacttgaagtttttatcataca
gatctttcacttccttagttagagtcacgccgagatattttatattattt
gtgactattggagagggtg
gaattcatatgctcatgcataattatgtggggtgggcataaggggggtga
tttttaaccatatgaatatatatgtgtgtttgtggttgtttaattttata
tatatatatagaagaaaaagagttaagaaagacattgcaaactggtggaa
caactgtaggaacaagcatggcaaatgctcaaaagctaaaaatatgtcca
ctatatgttactatatgatcaggtataaacattatgtgttttatttctat
tgaacagtcataagatcagccatgacatgacctcactatactgcaaagga
ttctgaaaatgaaagagcactcaaatgcatgaagaggaaataagaaaaat
gtgagaaatcttcatctattatatatctgactggagattgaaatccaaag
tattcatgatatatatcaaaataccctatttattttattgagttcttgag
gcaaggtcttactgggtatccatggttggcctggaactttgaatgtataa
taggctgtatacactcatagagctatatctgcctcccaaaatgatggaaa
tttggcatgtatgtatatgatatctggtctgacctcttggtattagatga
tcaaaaagggataaatccagggaaaatttattctctttctcagcagttat
agtttcctttgattatgtagcagaagggtaggatcctgtgatattagctc
ctttaaccttagcatgtctattcatgaagaacctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776686_142777698
seq2: B6Ng01-031H19.b_45_596 (reverse)

seq1  AGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATG  50

seq1  GTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGAC  100
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGAC  100

seq1  AGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAG  150

seq1  AATGGGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGT  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGT  200

seq1  GGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAG  250
      ||||||||||||||||| |||| |||||||||||||||||||||||||||
seq2  GGATCAAGGAACTTCACTTAAAGCCAGAGACACTGAAACTTATAGAGGAG  250

seq1  AAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTCCTGAA  300
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAA  300

seq1  CAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACC  350
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAGAACAGCAATGGCTTGTGCTG-AAGATCGAGAATTGACAAATGGGACC  349

seq1  TAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACA  399

seq1  AAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  449

seq1  TAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCA  499

seq1  GAAAATCAAATAACCCCATTAAAAAATGGGGCTCACAAAACCATCCAGTG  550
      ||||||||||||||||||||||||||||||||||| ||            
seq2  GAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAA----------CT  539

seq1  GAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTAT  600
      ||| |||||    |||                                  
seq2  GAACAAAGA----ATTC---------------------------------  552

seq1  CATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTC  650
                                                        
seq2  --------------------------------------------------  552

seq1  AAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACT  700
                                                        
seq2  --------------------------------------------------  552

seq1  TATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAA  750
                                                        
seq2  --------------------------------------------------  552

seq1  AATTCCTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAATTGAC  800
                                                        
seq2  --------------------------------------------------  552

seq1  AAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGT  850
                                                        
seq2  --------------------------------------------------  552

seq1  CTATAAGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATC  900
                                                        
seq2  --------------------------------------------------  552

seq1  CTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAG  950
                                                        
seq2  --------------------------------------------------  552

seq1  GTGGACCTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACT  1000
                                                        
seq2  --------------------------------------------------  552

seq1  GAACAAAGAATTC  1013
                   
seq2  -------------  552

seq1: chr3_112948025_112948759
seq2: B6Ng01-031H19.g_67_802

seq1  GAATTCATATGCTCATGCATAATTATGTGGGGTGGGCATAAGGGGGGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATGCTCATGCATAATTATGTGGGGTGGGCATAAGGGGGGTGA  50

seq1  TTTTTAACCATATGAATATATATGTGTGTTTGTGGTTGTTTAATTTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAACCATATGAATATATATGTGTGTTTGTGGTTGTTTAATTTTATA  100

seq1  TATATATATAGAAGAAAAAGAGTTAAGAAAGACATTGCAAACTGGTGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATAGAAGAAAAAGAGTTAAGAAAGACATTGCAAACTGGTGGAA  150

seq1  CAACTGTAGGAACAAGCATGGCAAATGCTCAAAAGCTAAAAATATGTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTAGGAACAAGCATGGCAAATGCTCAAAAGCTAAAAATATGTCCA  200

seq1  CTATATGTTACTATATGATCAGGTATAAACATTATGTGTTTTATTTCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATGTTACTATATGATCAGGTATAAACATTATGTGTTTTATTTCTAT  250

seq1  TGAACAGTCATAAGATCAGCCATGACATGACCTCACTATACTGCAAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGTCATAAGATCAGCCATGACATGACCTCACTATACTGCAAAGGA  300

seq1  TTCTGAAAATGAAAGAGCACTCAAATGCATGAAGAGGAAATAAGAAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAAATGAAAGAGCACTCAAATGCATGAAGAGGAAATAAGAAAAAT  350

seq1  GTGAGAAATCTTCATCTATTATATATCTGACTGGAGATTGAAATCCAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAATCTTCATCTATTATATATCTGACTGGAGATTGAAATCCAAAG  400

seq1  TATTCATGATATATATCAAAATACCCTATTTATTTTATTGAGTTCTTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATGATATATATCAAAATACCCTATTTATTTTATTGAGTTCTTGAG  450

seq1  GCAAGGTCTTACTGGGTATCCATGGTTGGCCTGGAACTTTGAATGTATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTCTTACTGGGTATCCATGGTTGGCCTGGAACTTTGAATGTATAA  500

seq1  TAGGCTGTATACACTCATAGAGCTATATCTGCCTCCC-AAATGATGGAAA  549
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TAGGCTGTATACACTCATAGAGCTATATCTGCCTCCCAAAATGATGGAAA  550

seq1  TTTGGCATGTATGTATATGATATCTGGTCTGACCTCTTGGTATTAGATGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCATGTATGTATATGATATCTGGTCTGACCTCTTGGTATTAGATGA  600

seq1  TCAAAAAGGGATAAATCCAGGGAAAATTTATTCTCTTTCTCAGCAGTTAA  649
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCAAAAAGGGATAAATCCAGGGAAAATTTATTCTCTTTCTCAGCAGTT-A  649

seq1  TAGTTTCC-TTGATTATGTAGCAGAAGGGTAGGATCCTGTGATATTAGCT  698
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCCTTTGATTATGTAGCAGAAGGGTAGGATCCTGTGATATTAGCT  699

seq1  CCTTTAACCTTAGCATGTCTATTCATGATGTACCTGT  735
      |||||||||||||||||||||||||||| | ||||||
seq2  CCTTTAACCTTAGCATGTCTATTCATGAAGAACCTGT  736