BAC Information

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BAC

Clone NameB6Ng01-031I11
Chromosome3 (Build37)
Map Location 157,609,768 - 157,733,474
singlet/doubletdoublet
Overlap geneAnkrd13c, Sfrs11, Lrrc40
Upstream geneNegr1, LOC546818, Zranb2, Ptger3, LOC433686, LOC624684, Cth
Downstream geneLrrc7, LOC100041008, LOC668905
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031I11.bB6Ng01-031I11.g
ACCDH861114DH861115
length4871,051
definitionDH861114|Mus musculus domesticus DNA, BAC clone: B6Ng01-031I11, 5' end.DH861115|Mus musculus domesticus DNA, BAC clone: B6Ng01-031I11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,609,768 - 157,610,260)(157,732,406 - 157,733,474)
sequence
caaagtcaggccctagattcctccaggataactggccatctctcctcgcc
tacagccttgccagcctgagcaagtccttgcacaggttagggaacccagc
agagtcttagcgagtgtttactgaaggtccagcgcagctgagtgacgtca
cgtccgatatccggtggtgtcttcctacgtcgttctgagggaggttgaca
aacagggtttcagcctttaagctagagttcgtaactgccgttgacctcct
cctttacgaaggcccagagcaccaggtcagagctctgagtctgggtctga
attcagccgcagggcccggcccagggtggaaccctgtgcgagaggagcgc
gggcgctgcccggaccctgacccaagcgcagaagcggccctctaacactc
cgcggcggcgtttcctccgaagctctcgcgagaggagccggggaaagatg
gctgcgccgggtctttccgagtgaggaggaggcggcg
gaattctcttgctaatacgttttatctcttatattgatttcccatcctat
ccccaagcaaagctctcacagaaaaacatgcagaggcctttgaggcagct
acagcttcaaggatttaacctttggcttcccatggcttcccgttccaagt
gttaaaaatatgaatgcatctatcagggatgtacagaagacaactttcaa
tttctatcagaaacacccagtgtatctgaggaaatacacatgtcctaaaa
tgagcctcaagtcagggtctaatggcaagatgagaggcacttaagcagat
ttcctcccagtaagtaaatggcaaagaggccaagcaagctctaagttctt
gaaagaagcagcaaagactcaggtggaaagcaaatgacatggctacttgt
atgggggaagcggcacttcagttcagacagtttgtgatcaagtatgaaaa
agcaagcaactgcatcaggcttgatgatgtatgcctatgattccagcaat
ggaaggtcaaaggcaggaggattacaagtttgaggccagtctgggctaca
tgggaagatcttgcaaggactaggattcaaggtgctaggttcaattccta
ggacctaaaaggcctactaaagcctttagaaatgctttagaaatagaatg
tagggataaagggaagaggactatgcagaaagcccaaccccaagattaaa
tgtttgttttaaactttaggttccatcatggcttggcattggcagctcct
tctactgcttcagtatccagaagcaacaggtctactgtcagaaattgaac
agactgacccaaatatgtgtaggattttttttttaaagaaaaactgatga
attcaggggaatgaaatagatattaaataaaatgtggttatcttaagtat
agtaggaaaaacgatcaatgtattgatctcttgcttagtctataagacac
ttaagccctagctgcttgtatgaaaatttatttttggctgtcatagtatt
tcctttataagaagtttataaaccttttattgcacctcaggttgtgtctt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_157609768_157610260
seq2: B6Ng01-031I11.b_43_535

seq1  GAATTCCAAAGTCAGGCCCTAGATTCCTCCAGGATAACTGGCCATCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGTCAGGCCCTAGATTCCTCCAGGATAACTGGCCATCTCTC  50

seq1  CTCGCCTACAGCCTTGCCAGCCTGAGCAAGTCCTTGCACAGGTTAGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCCTACAGCCTTGCCAGCCTGAGCAAGTCCTTGCACAGGTTAGGGAA  100

seq1  CCCAGCAGAGTCTTAGCGAGTGTTTACTGAAGGTCCAGCGCAGCTGAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAGAGTCTTAGCGAGTGTTTACTGAAGGTCCAGCGCAGCTGAGTG  150

seq1  ACGTCACGTCCGATATCCGGTGGTGTCTTCCTACGTCGTTCTGAGGGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCACGTCCGATATCCGGTGGTGTCTTCCTACGTCGTTCTGAGGGAGG  200

seq1  TTGACAAACAGGGTTTCAGCCTTTAAGCTAGAGTTCGTAACTGCCGTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAACAGGGTTTCAGCCTTTAAGCTAGAGTTCGTAACTGCCGTTGA  250

seq1  CCTCCTCCTTTACGAAGGCCCAGAGCACCAGGTCAGAGCTCTGAGTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCTTTACGAAGGCCCAGAGCACCAGGTCAGAGCTCTGAGTCTGG  300

seq1  GTCTGAATTCAGCCGCAGGGCCCGGCCCAGGGTGGAACCCTGTGCGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAATTCAGCCGCAGGGCCCGGCCCAGGGTGGAACCCTGTGCGAGAG  350

seq1  GAGCGCGGGCGCTGCCCGGACCCTGACCCAAGCGCAGAAGCGGCCCTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGCGGGCGCTGCCCGGACCCTGACCCAAGCGCAGAAGCGGCCCTCTA  400

seq1  ACACTCCGCGGCGGCGTTTCCTCCGAAGCTCTCGCGAGAGGAGCCGGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCGCGGCGGCGTTTCCTCCGAAGCTCTCGCGAGAGGAGCCGGGGA  450

seq1  AAGATGGCTGCGCCGGGTCTTTCCGAGTGAGGAGGAGGCGGCG  493
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGCTGCGCCGGGTCTTTCCGAGTGAGGAGGAGGCGGCG  493

seq1: chr3_157732406_157733474
seq2: B6Ng01-031I11.g_69_1119 (reverse)

seq1  AAAGACACAAAACCTGAGTTGCAATAAAAGGTTTTAATAAACTTCTTAAT  50
      ||||||||  |||||||| |||||||||||||||  ||||||||||| ||
seq2  AAAGACAC--AACCTGAGGTGCAATAAAAGGTTT--ATAAACTTCTT-AT  45

seq1  ATAGGAAAATAACCTATGAACAGCCAAAAATACATTTATACAATACAAGC  100
      | ||| |||||  ||||| ||||||||||||| ||||     ||||||||
seq2  AAAGG-AAATA--CTATG-ACAGCCAAAAATAAATTT---TCATACAAGC  88

seq1  AGCTTAGTGCTTAAGTGTCTTATTAGACTAAGCAAGAAGATCAATTACAT  150
      ||| ||| |||||||||||||| ||||||||||||| ||||||| |||| 
seq2  AGC-TAGGGCTTAAGTGTCTTA-TAGACTAAGCAAG-AGATCAA-TACA-  133

seq1  TTGATCGTTTTTCCTAACTATACTTAAGATAACCACATTTTATTTAATAT  200
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTGATCGTTTTTCCT-ACTATACTTAAGATAACCACATTTTATTTAATAT  182

seq1  CTATTTCATTCCCCTGAATTCATCAGTTTTTCTTTAAAAAAAAAATCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCATTCCCCTGAATTCATCAGTTTTTCTTTAAAAAAAAAATCCTA  232

seq1  CACATATTTGGGTCAGTCTGTTCAATTTCTGACAGTAGACCTGTTGCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATTTGGGTCAGTCTGTTCAATTTCTGACAGTAGACCTGTTGCTTC  282

seq1  TGGATACTGAAGCAGTAGAAGGAGCTGCCAATGCCAAGCCATGATGGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACTGAAGCAGTAGAAGGAGCTGCCAATGCCAAGCCATGATGGAAC  332

seq1  CTAAAGTTTAAAACAAACATTTAATCTTGGGGTTGGGCTTTCTGCATAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTTTAAAACAAACATTTAATCTTGGGGTTGGGCTTTCTGCATAGT  382

seq1  CCTCTTCCCTTTATCCCTACATTCTATTTCTAAAGCATTTCTAAAGGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCCCTTTATCCCTACATTCTATTTCTAAAGCATTTCTAAAGGCTT  432

seq1  TAGTAGGCCTTTTAGGTCCTAGGAATTGAACCTAGCACCTTGAATCCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGGCCTTTTAGGTCCTAGGAATTGAACCTAGCACCTTGAATCCTAG  482

seq1  TCCTTGCAAGATCTTCCCATGTAGCCCAGACTGGCCTCAAACTTGTAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCAAGATCTTCCCATGTAGCCCAGACTGGCCTCAAACTTGTAATC  532

seq1  CTCCTGCCTTTGACCTTCCATTGCTGGAATCATAGGCATACATCATCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCCTTTGACCTTCCATTGCTGGAATCATAGGCATACATCATCAAG  582

seq1  CCTGATGCAGTTGCTTGCTTTTTCATACTTGATCACAAACTGTCTGAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGCAGTTGCTTGCTTTTTCATACTTGATCACAAACTGTCTGAACT  632

seq1  GAAGTGCCGCTTCCCCCATACAAGTAGCCATGTCATTTGCTTTCCACCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGCCGCTTCCCCCATACAAGTAGCCATGTCATTTGCTTTCCACCTG  682

seq1  AGTCTTTGCTGCTTCTTTCAAGAACTTAGAGCTTGCTTGGCCTCTTTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTGCTGCTTCTTTCAAGAACTTAGAGCTTGCTTGGCCTCTTTGCC  732

seq1  ATTTACTTACTGGGAGGAAATCTGCTTAAGTGCCTCTCATCTTGCCATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTACTGGGAGGAAATCTGCTTAAGTGCCTCTCATCTTGCCATTA  782

seq1  GACCCTGACTTGAGGCTCATTTTAGGACATGTGTATTTCCTCAGATACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGACTTGAGGCTCATTTTAGGACATGTGTATTTCCTCAGATACAC  832

seq1  TGGGTGTTTCTGATAGAAATTGAAAGTTGTCTTCTGTACATCCCTGATAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTTTCTGATAGAAATTGAAAGTTGTCTTCTGTACATCCCTGATAG  882

seq1  ATGCATTCATATTTTTAACACTTGGAACGGGAAGCCATGGGAAGCCAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTCATATTTTTAACACTTGGAACGGGAAGCCATGGGAAGCCAAAG  932

seq1  GTTAAATCCTTGAAGCTGTAGCTGCCTCAAAGGCCTCTGCATGTTTTTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATCCTTGAAGCTGTAGCTGCCTCAAAGGCCTCTGCATGTTTTTCT  982

seq1  GTGAGAGCTTTGCTTGGGGATAGGATGGGAAATCAATATAAGAGATAAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGCTTTGCTTGGGGATAGGATGGGAAATCAATATAAGAGATAAAA  1032

seq1  CGTATTAGCAAGAGAATTC  1069
      |||||||||||||||||||
seq2  CGTATTAGCAAGAGAATTC  1051