BAC Information

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BAC

Clone NameB6Ng01-031O23
Chromosome3 (Build37)
Map Location 113,632,842 - 113,771,625
singlet/doubletdoublet
Overlap geneCol11a1
Upstream geneUtp14B-ps, EG433643, OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3
Downstream geneLOC100043220, Olfm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031O23.bB6Ng01-031O23.g
ACCDH861413DH861414
length1,1311,092
definitionDH861413|Mus musculus domesticus DNA, BAC clone: B6Ng01-031O23, 5' end.DH861414|Mus musculus domesticus DNA, BAC clone: B6Ng01-031O23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,770,485 - 113,771,625)(113,632,842 - 113,633,958)
sequence
tgttttttaaaaaaatcacactatgatgcaaatataggcatatgtgatgt
ctattgtcgcaaaatagtattactgaagaagcatggagcattgtatccat
gaaattatttacactaagtaaattccagttaaatatgagtcacaatattt
ctgacaaagtgacctggcagtgttcaggctaatgaatatctaatgttatc
acagctgcagcatctctgtaattatttatcaaatattaaattaatacatg
ttctaccatgtatggttcattttttaaaaatccaaaggactagaaattct
acacaagtgccaaagtataaacaaagatgaaagcaaaagaattttgagta
accatttagaaaaaaacaccccagtgaccacatctttagctacagtagac
taagctcacggtgtagaagagtggacctacgaggtgcttttactttcttc
atgacctatttccacacaagaagagtccagtttgaagtcttatatagcca
gacaagaacaagatttagcatataagtctcacagatggtggctgtggcta
tttggattagatcaatatgaaatttcatttgattcattttaacatcctaa
agttgctcaatgactttactaagtaacaataagagcctttttctttttga
atagataaaaaggaaaagttaggacagaaacctatggcgcaaaagctcca
agtacatttacattttaaaagctaacagtaaataaatgccctagttaaag
tttcatggggcaccaggaatgctcaaaatacaaaacaaatttaaagagaa
atttctcgcagcttattgtcatattagccagaaatttcacaatagacttt
cttctaactactgttcataatatttaatacattcttcagattaacactca
tggttatttcatattttaaatgtatgtcataaaatcagtccttggatcag
ggaggagaaaagaaaggaaagagagaagaagacagaattctattaatgct
ctacattgtcactcacaaaactagaaaatcagattgcttggatacaaaag
gtaaattagttaaggaaactggtcatgaccttttatgaagaatcctcaaa
attagagaggtttaaaggtttctatgaattc
gaattcaaactgatttaaaacatcatcttagtttgtctttgtaattggct
tgagctgtgtgaaatttggtcaacgattaaaatagcggggtaattgtaaa
gttggaacagtgtctactttttctgttttgttgttttcattgcatttatg
tatttgttggggtcatgcacacagaggttagcggagaacttatagcaata
ttttgttctctcctaccactgacttgtttatctgaggcacactttactta
catacatttaaatatataatattcatatattatatataaattaaatttat
tagattggcttataggatgtgttctgggtagtccaacaatggccctcaag
caggagaggccaaactcttagtagctgctcagtccaggaggctgtcccga
gagctgctaacttcagtctgtgttggcaggcagaagaagctggttctaat
agtaatgaggaaatacagtagtggccgccgcaaattggtagaatttggga
gcagagtaaaagcaacagaaagcaaaaccttcaggatcattgcatctgag
ctaccatcagaaggtgtggcccacctttggaaggggcagtgttcccaggt
caaatcacatccagaaaaatccctcaaaggagtgcttagcagcttgccgt
tttgtgggagtccagattcagccaaggttgattaccaagatttaccatca
ctcatagtttcatatttcagtctaggctgtcctagaacttatggcaaact
gcctccttagcctcctcggtgctagaataacagacacgagccaccacacc
cagtagtttagtctactgtagaaagaagaaaaatgtgaaacatcccttgt
tacttgcttctttgttgttcaaaacaccacaaatactcaccattgctaca
tattttggcctgatatgcaaaaaaagaataaaagtccttgaaatccaaag
tatgcactgtactgtgccagacaacatttcatatccactcattgtcaggc
tgccacttgttattctgccatccttcctcgaacacatacctgaaacaaca
atacttctggaccctagtagggaaaacccatgacaggagttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_113770485_113771625
seq2: B6Ng01-031O23.b_55_1185 (reverse)

seq1  GAATATCATAGAAAACTTTTATAACT-TCTAATTTTGAAGAATCTTACAT  49
      |||| |||||| |||| |||| | || ||||||||||| || |||| || 
seq2  GAAT-TCATAG-AAACCTTTAAACCTCTCTAATTTTGAGGATTCTT-CA-  46

seq1  TAAAAGTTCATGAACAGTTTCATAGACTAATTTA-CTTTTGTAATCCAAG  98
      |||||| |||||| ||||||| |  ||||||||| ||||||| |||||||
seq2  TAAAAGGTCATGACCAGTTTCCTTAACTAATTTACCTTTTGT-ATCCAAG  95

seq1  CAAATCTGATTTTCTAGTTTTGTGAGTGAC-ATGTAAGAGCATTAATAGA  147
      | |||||||||||||||||||||||||||| |||| ||||||||||||||
seq2  C-AATCTGATTTTCTAGTTTTGTGAGTGACAATGT-AGAGCATTAATAGA  143

seq1  ATTCTGTCTTTCTTCTCTTCTTTCCTTTCTTTTTCTCCTCCCTGATTCCA  197
      |||||||| |||||||| ||||||||||| ||||||||||||||| ||||
seq2  ATTCTGTC-TTCTTCTC-TCTTTCCTTTC-TTTTCTCCTCCCTGA-TCCA  189

seq1  AGGACTGATTTTTATGACATAACATTTAAAATATGAAATAACCATGAGTG  247
      |||||||| ||||||||||| |||||||||||||||||||||||||||||
seq2  AGGACTGA-TTTTATGACAT-ACATTTAAAATATGAAATAACCATGAGTG  237

seq1  TTAATCTGAAGAATGTATTAAATATTATGAACAGTAGTTAGAAGAAAGTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTGAAGAATGTATTAAATATTATGAACAGTAGTTAGAAGAAAGTC  287

seq1  TATTGTGAAATTTCTGGCTAATATGACAATAAGCTGCGAGAAATTTCTCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGAAATTTCTGGCTAATATGACAATAAGCTGCGAGAAATTTCTCT  337

seq1  TTAAATTTGTTTTGTATTTTGAGCATTCCTGGTGCCCCATGAAACTTTAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTGTTTTGTATTTTGAGCATTCCTGGTGCCCCATGAAACTTTAA  387

seq1  CTAGGGCATTTATTTACTGTTAGCTTTTAAAATGTAAATGTACTTGGAGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGCATTTATTTACTGTTAGCTTTTAAAATGTAAATGTACTTGGAGC  437

seq1  TTTTGCGCCATAGGTTTCTGTCCTAACTTTTCCTTTTTATCTATTCAAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCGCCATAGGTTTCTGTCCTAACTTTTCCTTTTTATCTATTCAAAA  487

seq1  AGAAAAAGGCTCTTATTGTTACTTAGTAAAGTCATTGAGCAACTTTAGGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGGCTCTTATTGTTACTTAGTAAAGTCATTGAGCAACTTTAGGA  537

seq1  TGTTAAAATGAATCAAATGAAATTTCATATTGATCTAATCCAAATAGCCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAATGAATCAAATGAAATTTCATATTGATCTAATCCAAATAGCCA  587

seq1  CAGCCACCATCTGTGAGACTTATATGCTAAATCTTGTTCTTGTCTGGCTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACCATCTGTGAGACTTATATGCTAAATCTTGTTCTTGTCTGGCTA  637

seq1  TATAAGACTTCAAACTGGACTCTTCTTGTGTGGAAATAGGTCATGAAGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGACTTCAAACTGGACTCTTCTTGTGTGGAAATAGGTCATGAAGAA  687

seq1  AGTAAAAGCACCTCGTAGGTCCACTCTTCTACACCGTGAGCTTAGTCTAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAGCACCTCGTAGGTCCACTCTTCTACACCGTGAGCTTAGTCTAC  737

seq1  TGTAGCTAAAGATGTGGTCACTGGGGTGTTTTTTTCTAAATGGTTACTCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTAAAGATGTGGTCACTGGGGTGTTTTTTTCTAAATGGTTACTCA  787

seq1  AAATTCTTTTGCTTTCATCTTTGTTTATACTTTGGCACTTGTGTAGAATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTTTGCTTTCATCTTTGTTTATACTTTGGCACTTGTGTAGAATT  837

seq1  TCTAGTCCTTTGGATTTTTAAAAAATGAACCATACATGGTAGAACATGTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTCCTTTGGATTTTTAAAAAATGAACCATACATGGTAGAACATGTA  887

seq1  TTAATTTAATATTTGATAAATAATTACAGAGATGCTGCAGCTGTGATAAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTAATATTTGATAAATAATTACAGAGATGCTGCAGCTGTGATAAC  937

seq1  ATTAGATATTCATTAGCCTGAACACTGCCAGGTCACTTTGTCAGAAATAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATATTCATTAGCCTGAACACTGCCAGGTCACTTTGTCAGAAATAT  987

seq1  TGTGACTCATATTTAACTGGAATTTACTTAGTGTAAATAATTTCATGGAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTCATATTTAACTGGAATTTACTTAGTGTAAATAATTTCATGGAT  1037

seq1  ACAATGCTCCATGCTTCTTCAGTAATACTATTTTGCGACAATAGACATCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCTCCATGCTTCTTCAGTAATACTATTTTGCGACAATAGACATCA  1087

seq1  CATATGCCTATATTTGCATCATAGTGTGATTTTTTTAAAAAACA  1141
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCCTATATTTGCATCATAGTGTGATTTTTTTAAAAAACA  1131

seq1: chr3_113632842_113633958
seq2: B6Ng01-031O23.g_69_1160

seq1  GAATTCAAACTGATTTAAAACATCATCTTAGTTTGTCTTTGTAATTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTGATTTAAAACATCATCTTAGTTTGTCTTTGTAATTGGCT  50

seq1  TGAGCTGTGTGAAATTTGGTCAACGATTAAAATAGCGGGGTAATTGTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGTGTGAAATTTGGTCAACGATTAAAATAGCGGGGTAATTGTAAA  100

seq1  GTTGGAACAGTGTCTACTTTTTCTGTTTTGTTGTTTTCATTGCATTTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAACAGTGTCTACTTTTTCTGTTTTGTTGTTTTCATTGCATTTATG  150

seq1  TATTTGTTGGGGTCATGCACACAGAGGTTAGCGGAGAACTTATAGCAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTGGGGTCATGCACACAGAGGTTAGCGGAGAACTTATAGCAATA  200

seq1  TTTTGTTCTCTCCTACCACTGACTTGTTTATCTGAGGCACACTTTACTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTCTCTCCTACCACTGACTTGTTTATCTGAGGCACACTTTACTTA  250

seq1  CATACATTTAAATATATAATATTCATATATTATATATAAATTAAATTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATTTAAATATATAATATTCATATATTATATATAAATTAAATTTAT  300

seq1  TAGATTGGCTTATAGGATGTGTTCTGGGTAGTCCAACAATGGCCCTCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGGCTTATAGGATGTGTTCTGGGTAGTCCAACAATGGCCCTCAAG  350

seq1  CAGGAGAGGCCAAACTCTTAGTAGCTGCTCAGTCCAGGAGGCTGTCCCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAGGCCAAACTCTTAGTAGCTGCTCAGTCCAGGAGGCTGTCCCGA  400

seq1  GAGCTGCTAACTTCAGTCTGTGTTGGCAGGCAGAAGAAGCTGGTTCTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCTAACTTCAGTCTGTGTTGGCAGGCAGAAGAAGCTGGTTCTAAT  450

seq1  AGTAATGAGGAAATACAGTAGTGGCCGCCGCAAATTGGTAGAATTTGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGAGGAAATACAGTAGTGGCCGCCGCAAATTGGTAGAATTTGGGA  500

seq1  GCAGAGTAAAAGCAACAGAAAGCAAAACCTTCAGGATCATTGCATCTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTAAAAGCAACAGAAAGCAAAACCTTCAGGATCATTGCATCTGAG  550

seq1  CTACCATCAGAAGGTGTGGCCCACCTTTGGAAGGGGCAGTGTTCCCAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATCAGAAGGTGTGGCCCACCTTTGGAAGGGGCAGTGTTCCCAGGT  600

seq1  CAAATCACATCCAGAAAAATCCCTCAAAGGAGTGCTTAGCAGCTTGCCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCACATCCAGAAAAATCCCTCAAAGGAGTGCTTAGCAGCTTGCCGT  650

seq1  TTTGT-GGAGTCCAGATTCAGCCAA-GTTGATTACCAAGATTTACCATCA  698
      ||||| ||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTGTGGGAGTCCAGATTCAGCCAAGGTTGATTACCAAGATTTACCATCA  700

seq1  CTCATAGTTTCATATTTCAGTCTAGGCTGTCCTAGAACTTATGGCAAACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGTTTCATATTTCAGTCTAGGCTGTCCTAGAACTTATGGCAAACT  750

seq1  GCCTCCTTAGCCTCCTCGGTGCTAGAATAACAGACACGAGCCACCACACC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTTAGCCTCCTCGGTGCTAGAATAACAGACACGAGCCACCACACC  800

seq1  CAGTAGTTTAGTCTACTGTAGAAAAGAAAGAAAAATGTGAAAACATCCCT  848
      ||||||||||||||||||||||||   |||||||||||| ||||||||||
seq2  CAGTAGTTTAGTCTACTGTAGAAA--GAAGAAAAATGTG-AAACATCCCT  847

seq1  TGTTAACTTGCTTCTTTGTTGTTTCAAAACACCACAAATACTCACCATTG  898
      |||| |||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTT-ACTTGCTTCTTTGTTG-TTCAAAACACCACAAATACTCACCATTG  895

seq1  CTACATAATTTTGGCCTGAATATGCAAAAAAAAAGAATAAAAAGTCCTTG  948
      |||||| ||||||||||| ||||||  ||||||||||| |||||||||||
seq2  CTACAT-ATTTTGGCCTG-ATATGC--AAAAAAAGAAT-AAAAGTCCTTG  940

seq1  AAAATTCCAAAGTTATGCACTGTACTGTGCCAAGACAACATTTCATATCC  998
      |||  ||||||| |||||||||||||||||| ||||||||||||||||||
seq2  AAA--TCCAAAG-TATGCACTGTACTGTGCC-AGACAACATTTCATATCC  986

seq1  AAACTCA-TGTCCAGCTGCCACTTGTTATGTCTGCCATCCTCTCTCAGAA  1047
        ||||| ||||  ||||||||||||||| |||||||||||  ||| |||
seq2  --ACTCATTGTCAGGCTGCCACTTGTTAT-TCTGCCATCCTTCCTC-GAA  1032

seq1  CAACAATAACTAGAACAACAATAACTTACATTGAACACCTAAGAAGGGAG  1097
      ||   ||| ||  ||||||||| ||||    || || ||| || ||||| 
seq2  CA--CATACCTGAAACAACAAT-ACTT---CTGGAC-CCT-AGTAGGGA-  1073

seq1  AAACACAATGACAGGAGTTG  1117
      |||| | |||||||||||||
seq2  AAAC-CCATGACAGGAGTTG  1092