BAC Information

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BAC

Clone NameB6Ng01-032A18
Chromosome1 (Build37)3 (Build37)
Map Location 50,832,199 - 50,832,71920,724,270 - 20,725,415
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504, Obfc2a, Myo1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032A18.bB6Ng01-032A18.g
ACCDH861493DH861494
length1,0121,119
definitionDH861493|Mus musculus domesticus DNA, BAC clone: B6Ng01-032A18, 5' end.DH861494|Mus musculus domesticus DNA, BAC clone: B6Ng01-032A18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,832,199 - 50,832,719)(20,724,270 - 20,725,415)
sequence
gaattctttgttcagctctgagccccattttttaatggggttttttgatt
ttctagagtccaccttcttaagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatgtgttggtggtct
ttttgtcttattgactgtgtcttttgagttgcagaagctttgcaacttta
tgagatcccatttgttgattctcaatcttacagcacaagtcattgctctt
ctaatcaggaatttttcccctggacccatatctttgaggcttttccctac
tttctcttctacaagtttcagtgtctctggctttatgtggagttccttaa
tccacttagatttgaccttaacaaggagataggaatggatcaatttgcat
tcttctacatgataacaaccagttgtgccagcaccatttgttgaaaatgc
tatcttttttccactggatggttttagctctcttgtcaaaatcaagtgat
cataggtgtgtggattcatctcagggtcttcaattctgttccattagttt
acttgtctgttgctataacagtaccatgcagtttttatcacaattgctct
gtagtacagctttaggtcaggcatggtgatttcaccagaggttcttttat
ccttgagaagtgtttttgctatcctaggttttttgttattccatatgaat
ttgcagattgccctttctaattcgttgaagagttgagttggaattctgat
ggggattgcattgaatctgtagattgcttttggcaagatagccattttta
ctatattgatcctgccaatccatgagcatgggagatctttccatcttctg
aaatctttgatttcttttcttcagagacttgaatttcttatcatacagtt
ctttcctttctttgttagagtcacgccaaggtatgttataatattgtgac
tattgaaaagggtgttgtttccctaaatttcttctcagcctgtttatcct
ttgtgacagaaa
gaattcatgtctgtgggtgctggaggctttggtgcctcttctgattacaa
agcatagagacaaaacagggtaaagaatagaatgagcacttaagatacca
ctggtttttctctgtctgatgccatcacacagtatgctggaactacttac
aaagaaggaccatgttttttcaattcaccctatcagctgccattggtttg
gataatgcaagattcctgaaaggtccatatacaaaggcgccaggatggag
gtattaggagatgctatgagtgatgtacaatagaggattctgcctattat
ttttttttcactgatccagatgagaagattgctctcacccatgtttgtgc
gctggtgccaacatttattgcatcaccagagctgagcaaattcagacact
gtacctttgtatctctgaaactgtgggatacaaacctgtttttcttagaa
tttagtgaccttaattacttcattgtagtgagacagaactgactcatgca
ttagtaaaacatgaaaatatccagtgataacaactgtggtttgcagcaac
tcagtctgagggacactaaatcttctttactttgactatttttattttca
agctatcgtgagatcgttgttcctcttttcactttacagaggaggaaact
gaagtcaaaagaaccaactgtcactccatgtggttgtataacagactacc
ctaaaattagtggaatgaaacaagcactgctgagatttttcacaactatt
ccatttgtgcagttcttaactgcctagggaactcagtggtaggaagtgaa
gtgctgacaggcaagagagtcatgtagctggaacactaatacatcgtggt
actatctcttacgtagattctctgattggaatacctacatatgattctca
tggggcagctccgtgttctttgatgatatagctggaaagcagtgtcagca
tcccagagaaaagaagtgaaagctgacaatttctgtagcttgactaaaac
cggtgtaaaagaactgaatgtgtgtagaaaacatgccatgcctctggact
ttagcacttgatagaaagggtatcatgatgctctgccttcttcagtttat
agatatgtctttatatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50832199_50832719
seq2: B6Ng01-032A18.b_48_566 (reverse)

seq1  ATGAACCCACACATCTATGGTCACTTAATTTTTGACAGGGGAGCTAAAGC  50
      ||||| ||||||| ||||| |||||| | |||||||| | |||||||| |
seq2  ATGAATCCACACACCTATGATCACTTGA-TTTTGACAAGAGAGCTAAAAC  49

seq1  CATTCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACT  100
      ||| |||||||||||||| |||||||||||||||||||||||||||||||
seq2  CATCCAGTGGAAAAAAGATAGCATTTTCAACAAATGGTGCTGGCACAACT  99

seq1  GGCGGTTATCATGCAGAAGAATGTGAAATGATTCATTCCTATCTCCTTGT  150
      ||  ||||||||| |||||||||  || |||| |||||||||||||||||
seq2  GGTTGTTATCATGTAGAAGAATGCAAATTGATCCATTCCTATCTCCTTGT  149

seq1  AGTAATGCCAAATCTAAGTGGATTAAGGAACTCCACTTAAAACCAGAGAC  200
        ||| | |||||||||||||||||||||||||||| |||| ||||||||
seq2  --TAAGGTCAAATCTAAGTGGATTAAGGAACTCCACATAAAGCCAGAGAC  197

seq1  ACTGAAACTTATAGAGGAGAAGGTGGGGAAAAGCCTCCAAGATATGGGCA  250
      |||||||||| |||| ||||| || |||||||||||| ||||||||||  
seq2  ACTGAAACTTGTAGAAGAGAAAGTAGGGAAAAGCCTCAAAGATATGGGTC  247

seq1  CAGGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATTG  300
      |||||||||||||||||| ||||| ||||||| |||||||||||||||||
seq2  CAGGGGAAAAATTCCTGATTAGAAGAGCAATGACTTGTGCTGTAAGATTG  297

seq1  AGAATGGACAAATGGGAACTCATAAAGTTGCAAACCTTCTGTAAGGCAAA  350
      |||||  |||||||||| |||||||||||||||| |||||| ||  ||||
seq2  AGAATCAACAAATGGGATCTCATAAAGTTGCAAAGCTTCTGCAACTCAAA  347

seq1  AGACACCTTCAATAAGACAAAAAGGCCACCAACAGATTGGGAGAGGATCT  400
      ||||||  |||||||||||||||| ||||||||| ||||||| |||||||
seq2  AGACACAGTCAATAAGACAAAAAGACCACCAACACATTGGGAAAGGATCT  397

seq1  TTACCTATCCTAAATCAAATAGGGGACTAAGATCCAATATATATAAAGAA  450
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  TTACCTATCCTAAATCAGATAGGGGACTAATATCCAATATATATAAAGAA  447

seq1  CTTAAGAAGGTGGATTCCAGAAAATCAAATAACCCCATT-AAAAATGGGG  499
      |||||||||||||| || ||||||||||| ||||||||| ||||||||||
seq2  CTTAAGAAGGTGGACTCTAGAAAATCAAAAAACCCCATTAAAAAATGGGG  497

seq1  CTCAGAGCTGAACAATGAATTC  521
      ||||||||||||||| ||||||
seq2  CTCAGAGCTGAACAAAGAATTC  519

seq1: chr3_20724270_20725415
seq2: B6Ng01-032A18.g_70_1188 (reverse)

seq1  TCCATATAACAGCCATTATCTATAAAGGACTGAAGAAGGGCAGAGCATCA  50
      ||||||||| || || |||||||||   ||||||||| ||||||||||||
seq2  TCCATATAA-AGACA-TATCTATAA---ACTGAAGAA-GGCAGAGCATCA  44

seq1  TGAATACCCCTTTCCCTATCACAGCTGCTAAAAGTTCAAGAGGGCAATGG  100
      || |||||| ||   |||||| || |||||||   || |||||   ||||
seq2  TG-ATACCCTTT---CTATCA-AG-TGCTAAA--GTCCAGAGG--CATGG  84

seq1  CCATGTTTTCTACCACAACATTCAAGTTCTATTACACCGGTTTTTAGGTC  150
       ||||||||||| ||| |||||| |||||| |||||||||||||   |||
seq2  -CATGTTTTCTA-CAC-ACATTC-AGTTCTTTTACACCGGTTTT--AGTC  128

seq1  AAGGCTACAGAAATTGTCAGCTTTCACTTCTTTTCTCCTGGGATGCTGAC  200
      || ||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AA-GCTACAGAAATTGTCAGCTTTCACTTCTTTTCT-CTGGGATGCTGAC  176

seq1  ACCTGCTTTCCAGCTATAATCATCAAAGAACACGGAGCTGCCCCATGGAG  250
      | ||||||||||||||| |||||||||||||||||||||||||||| |||
seq2  A-CTGCTTTCCAGCTAT-ATCATCAAAGAACACGGAGCTGCCCCAT-GAG  223

seq1  AATCATATGTAGGTATTCCAATCAGAGAATCTACGTAAGAGATAGTACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATATGTAGGTATTCCAATCAGAGAATCTACGTAAGAGATAGTACCA  273

seq1  CGATGTATTAGTGTTCCAGCTACATGACTCTCTTGCCTGTCAGCACTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGTATTAGTGTTCCAGCTACATGACTCTCTTGCCTGTCAGCACTTCA  323

seq1  CTTCCTACCACTGAGTTCCCTAGGCAGTTAAGAACTGCACAAATGGAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTACCACTGAGTTCCCTAGGCAGTTAAGAACTGCACAAATGGAATA  373

seq1  GTTGTGAAAAATCTCAGCAGTGCTTGTTTCATTCCACTAATTTTAGGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGAAAAATCTCAGCAGTGCTTGTTTCATTCCACTAATTTTAGGGTA  423

seq1  GTCTGTTATACAACCACATGGAGTGACAGTTGGTTCTTTTGACTTCAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTATACAACCACATGGAGTGACAGTTGGTTCTTTTGACTTCAGTT  473

seq1  TCCTCCTCTGTAAAGTGAAAAGAGGAACAACGATCTCACGATAGCTTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCTGTAAAGTGAAAAGAGGAACAACGATCTCACGATAGCTTGAA  523

seq1  AATAAAAATAGTCAAAGTAAAGAAGATTTAGTGTCCCTCAGACTGAGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAATAGTCAAAGTAAAGAAGATTTAGTGTCCCTCAGACTGAGTTG  573

seq1  CTGCAAACCACAGTTGTTATCACTGGATATTTTCATGTTTTACTAATGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAACCACAGTTGTTATCACTGGATATTTTCATGTTTTACTAATGCA  623

seq1  TGAGTCAGTTCTGTCTCACTACAATGAAGTAATTAAGGTCACTAAATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCAGTTCTGTCTCACTACAATGAAGTAATTAAGGTCACTAAATTCT  673

seq1  AAGAAAAACAGGTTTGTATCCCACAGTTTCAGAGATACAAAGGTACAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAACAGGTTTGTATCCCACAGTTTCAGAGATACAAAGGTACAGTG  723

seq1  TCTGAATTTGCTCAGCTCTGGTGATGCAATAAATGTTGGCACCAGCGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATTTGCTCAGCTCTGGTGATGCAATAAATGTTGGCACCAGCGCAC  773

seq1  AAACATGGGTGAGAGCAATCTTCTCATCTGGATCAGTGAAAAAAAAATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGGGTGAGAGCAATCTTCTCATCTGGATCAGTGAAAAAAAAATAA  823

seq1  TAGGCAGAATCCTCTATTGTACATCACTCATAGCATCTCCTAATACCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAGAATCCTCTATTGTACATCACTCATAGCATCTCCTAATACCTCC  873

seq1  ATCCTGGCGCCTTTGTATATGGACCTTTCAGGAATCTTGCATTATCCAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGCGCCTTTGTATATGGACCTTTCAGGAATCTTGCATTATCCAAA  923

seq1  CCAATGGCAGCTGATAGGGTGAATTGAAAAAACATGGTCCTTCTTTGTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGGCAGCTGATAGGGTGAATTGAAAAAACATGGTCCTTCTTTGTAA  973

seq1  GTAGTTCCAGCATACTGTGTGATGGCATCAGACAGAGAAAAACCAGTGGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTCCAGCATACTGTGTGATGGCATCAGACAGAGAAAAACCAGTGGT  1023

seq1  ATCTTAAGTGCTCATTCTATTCTTTACCCTGTTTTGTCTCTATGCTTTGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAAGTGCTCATTCTATTCTTTACCCTGTTTTGTCTCTATGCTTTGT  1073

seq1  AATCAGAAGAGGCACCAAAGCCTCCAGCACCCACAGACATGAATTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAAGAGGCACCAAAGCCTCCAGCACCCACAGACATGAATTC  1119