BAC Information

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BAC

Clone NameB6Ng01-032L09
Chromosome3 (Build37)
Map Location 50,288,130 - 50,428,689
singlet/doubletdoublet
Overlap geneEG621304, LOC100039667
Upstream geneLOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18, LOC100039628, LOC639469, Slc7a11
Downstream geneCcrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032L09.bB6Ng01-032L09.g
ACCDH861962DH861963
length992904
definitionDH861962|Mus musculus domesticus DNA, BAC clone: B6Ng01-032L09, 5' end.DH861963|Mus musculus domesticus DNA, BAC clone: B6Ng01-032L09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,427,690 - 50,428,689)(50,288,130 - 50,289,036)
sequence
gaattctttttgatttgggtttccctctgacagtttatggcaatgtagag
tgtcaccatgaccatgaaggattattagtagttttatgtaagctttgtta
atcatctgtcttctggcccagtctccaaaggcttgtttcagactcccagg
gagaagaggctctcacaaagtatgatccaaggaaagcttatccacatgga
ctagacccctggccaggtggtgttgttgcctagtaacagtgttcaacctt
aagaactcaaaggtagacagagaacagctacaaccgtgctttctgtgtgg
cagctggctataagcttgagtctctgggctcagtcaggagaactgcttat
gaagggaagcaataactgctatcagtctgcaagttcacatgtacaggaca
gcagaaatggtagagaacacaccaaaaaaaaatcatgaaaaactggtaat
cacgatgtggtcgaaattaaatggaaaaaatgccttgatgacctccttga
atagctgaagagaatttcccaatgaagtgtctcggtttggccagacagaa
gctgtaggtctttgctttgttagtttgctgttgtggttaagctgattggt
aagctgaggctacctgttgatgcatcatagtcagttgtagagactcaatg
gccatcagacattggattctacttattactgacattgctattataatatt
tgtgacccaataataatattttcttatggcaagtgtacaatatcactaac
aaaaaaatctgttagacatcaatgaaataaagctggacaatagaagctta
taaaaaatcttaaaaaaaataatctgtataaatattggcctgtagatcca
ccatgaagcttgaacagaatgttctcaaataaagttctggggatgtttgc
ggagttagctttagatttatttcagccaaagatattcttatcatttgcat
atcagagggttttattttgtttgaatggggatagttccatga
gaattcagaacatcaaagcaagtaaagttgagagagaaaagagaacctgc
aattgctaacatctgtgacctgtgtcactattccagcatgtgagtagctc
tagtgaagaaagaaaagcatagggtcacagtgtgcagaggctgcccttcc
tgtttctctaattcccctatgtgttgttaagactgtgaggaatgcatctc
catttgcctctgtgttttcctcagtaataataataccaaactcttcgaat
gttatttgccaagatatacacggatccaaagagaataacatttaggaaat
gacattctactacataactctaattggaagcacaatattgtgatttgata
agaatggtgcccatagactcacatgtttgaatgcttagccatgagaagta
attagcactattaggaggtgtggccttgctgcagtaggtatggccttgtg
ggagaaagtatgtcactgtggaggtggcctttgaggtcatctaagctcaa
gttatgcccagtgtggtgcattgtctcttcctgctgccttcagatcaaga
tgtagagctcttgcctcctccagcaccatgtctgcctgcacattgccatc
attctaccattataatcatggactaaacctcttaaactgtaagccagccc
caatgaaatgttttcctttataagagttaccttagtcatgctatctcttc
acagcaataaaacctttattgaagacagcacccaagtcttttataaactt
ccctccaatactgttaaattttcaaaataggaactcctgacattcatgga
ttattgggtcactgtgtctaaatgggagaaatagaattggaaagggcacg
tatttatgtctgtctgcgcattttatttctcaaaaggggtttaggttcat
cgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_50427690_50428689
seq2: B6Ng01-032L09.b_44_1035 (reverse)

seq1  TCATGGGAACTATCCCCATTCCAAAATAAAATAAAACACTCTGATATGCA  50
      |||| ||||||||||||||||  ||| |||||||||| ||||||||||||
seq2  TCAT-GGAACTATCCCCATTC--AAACAAAATAAAACCCTCTGATATGCA  47

seq1  AATGATAAGAATATCCTTTGGCATGAAATAAAATCTAAAAGCTAACTCCG  100
      |||||||||||||| ||||||| |||||| |||||| |||||||||||||
seq2  AATGATAAGAATAT-CTTTGGC-TGAAAT-AAATCT-AAAGCTAACTCCG  93

seq1  CAAAACATCCCCAGAACTTTTATTTGAGAACATTCTGTTCAAGCTTCATG  150
      | ||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  C-AAACATCCCCAGAAC-TTTATTTGAGAACATTCTGTTCAAGCTTCATG  141

seq1  GTGGAATCTACAGGCCAATATTTATACAGATTATTTTTTTTAAGATTTTT  200
      |||| |||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTGG-ATCTACAGGCCAATATTTATACAGATTATTTTTTTTAAGA-TTTT  189

seq1  TTATAAGCTTCTATTGTCCAGCTTTATTTCATTGATGTCTAACAGATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGCTTCTATTGTCCAGCTTTATTTCATTGATGTCTAACAGATTTT  239

seq1  TTTGTTAGTGATATTGTACACTTGCCATAAGAAAATATTATTATTGGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAGTGATATTGTACACTTGCCATAAGAAAATATTATTATTGGGTC  289

seq1  ACAAATATTATAATAGCAATGTCAGTAATAAGTAGAATCCAATGTCTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATTATAATAGCAATGTCAGTAATAAGTAGAATCCAATGTCTGAT  339

seq1  GGCCATTGAGTCTCTACAACTGACTATGATGCATCAACAGGTAGCCTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTGAGTCTCTACAACTGACTATGATGCATCAACAGGTAGCCTCAG  389

seq1  CTTACCAATCAGCTTAACCACAACAGCAAACTAAC-AAGCAAAGACCTAC  449
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTTACCAATCAGCTTAACCACAACAGCAAACTAACAAAGCAAAGACCTAC  439

seq1  AGCTTCTGTCTGGCCAAACCGAGACACTTCATTGGGAAATTCTCTTCAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTGTCTGGCCAAACCGAGACACTTCATTGGGAAATTCTCTTCAGC  489

seq1  TATTCAAGGAGGTCATCAAGGCATTTTTTCCATTTAATTTCGACCACATC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAGGAGGTCATCAAGGCATTTTTTCCATTTAATTTCGACCACATC  539

seq1  GTGATTACCAGTTTTTCATGATTTTTTTTTGGTGTGTTCTCTACCATTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTACCAGTTTTTCATGATTTTTTTTTGGTGTGTTCTCTACCATTTC  589

seq1  TGCTGTCCTGTACATGTGAACTTGCAGACTGATAGCAGTTATTGCTTCCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCCTGTACATGTGAACTTGCAGACTGATAGCAGTTATTGCTTCCC  639

seq1  TTCATAAGCAGTTCTCCTGACTGAGCCCAGAGACTCAAGCTTATAGCCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAGCAGTTCTCCTGACTGAGCCCAGAGACTCAAGCTTATAGCCAG  689

seq1  CTGCCACACAGAAAGCACGGTTGTAGCTGTTCTCTGTCTACCTTTGAGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACACAGAAAGCACGGTTGTAGCTGTTCTCTGTCTACCTTTGAGTT  739

seq1  CTTAAGGTTGAACACTGTTACTAGGCAACAACACCACCTGGCCAGGGGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGGTTGAACACTGTTACTAGGCAACAACACCACCTGGCCAGGGGTC  789

seq1  TAGTCCATGTGGATAAGCTTTCCTTGGATCATACTTTGTGAGAGCCTCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCATGTGGATAAGCTTTCCTTGGATCATACTTTGTGAGAGCCTCTT  839

seq1  CTCCCTGGGAGTCTGAAACAAGCCTTTGGAGACTGGGCCAGAAGACAGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGGGAGTCTGAAACAAGCCTTTGGAGACTGGGCCAGAAGACAGAT  889

seq1  GATTAACAAAGCTTACATAAAACTACTAATAATCCTTCATGGTCATGGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAACAAAGCTTACATAAAACTACTAATAATCCTTCATGGTCATGGTG  939

seq1  ACACTCTACATTGCCAT-CTCTGTCAGAGGGAAACCCAAATC-AAAAGAA  997
      |||||||||||||||||   |||||||||||||||||||||| |||||||
seq2  ACACTCTACATTGCCATAAACTGTCAGAGGGAAACCCAAATCAAAAAGAA  989

seq1  TTC  1000
      |||
seq2  TTC  992

seq1: chr3_50288130_50289036
seq2: B6Ng01-032L09.g_70_973

seq1  GAATTCAGAACATCAAAGCAAGTAAAGTTGAGAGAGAAAAGAGAACCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAACATCAAAGCAAGTAAAGTTGAGAGAGAAAAGAGAACCTGC  50

seq1  AATTGCTAACATCTGTGACCTGTGTCACTATTCCAGCATGTGAGTAGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTAACATCTGTGACCTGTGTCACTATTCCAGCATGTGAGTAGCTC  100

seq1  TAGTGAAGAAAGAAAAGCATAGGGTCACAGTGTGCAGAGGCTGCCCTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAAGAAAGAAAAGCATAGGGTCACAGTGTGCAGAGGCTGCCCTTCC  150

seq1  TGTTTCTCTAATTCCCCTATGTGTTGTTAAGACTGTGAGGAATGCATCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCTAATTCCCCTATGTGTTGTTAAGACTGTGAGGAATGCATCTC  200

seq1  CATTTGCCTCTGTGTTTTCCTCAGTAATAATAATACCAAACTCTTCGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCCTCTGTGTTTTCCTCAGTAATAATAATACCAAACTCTTCGAAT  250

seq1  GTTATTTGCCAAGATATACACGGATCCAAAGAGAATAACATTTAGGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTGCCAAGATATACACGGATCCAAAGAGAATAACATTTAGGAAAT  300

seq1  GACATTCTACTACATAACTCTAATTGGAAGCACAATATTGTGATTTGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCTACTACATAACTCTAATTGGAAGCACAATATTGTGATTTGATA  350

seq1  AGAATGGTGCCCATAGACTCACATGTTTGAATGCTTAGCCATGAGAAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGTGCCCATAGACTCACATGTTTGAATGCTTAGCCATGAGAAGTA  400

seq1  ATTAGCACTATTAGGAGGTGTGGCCTTGCTGCAGTAGGTATGGCCTTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCACTATTAGGAGGTGTGGCCTTGCTGCAGTAGGTATGGCCTTGTG  450

seq1  GGAGAAAGTATGTCACTGTGGAGGTGGCCTTTGAGGTCATCTAAGCTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAGTATGTCACTGTGGAGGTGGCCTTTGAGGTCATCTAAGCTCAA  500

seq1  GTTATGCCCAGTGTGGTGCATTGTCTCTTCCTGCTGCCTTCAGATCAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGCCCAGTGTGGTGCATTGTCTCTTCCTGCTGCCTTCAGATCAAGA  550

seq1  TGTAGAGCTCTTGCCTCCTCCAGCACCATGTCTGCCTGCACATTGCCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGCTCTTGCCTCCTCCAGCACCATGTCTGCCTGCACATTGCCATC  600

seq1  ATTCTACCATTATAATCATGGACTAAACCTCTTAAACTGTAAGCCAGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACCATTATAATCATGGACTAAACCTCTTAAACTGTAAGCCAGCCC  650

seq1  CAATGAAATGTTTTCCTTTATAAGAGTTACCTTAGTCATGCTATCTCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAATGTTTTCCTTTATAAGAGTTACCTTAGTCATGCTATCTCTTC  700

seq1  ACAGCAATAAAACC-TTAATGAAGACAGCACCCAAGTCTTTTATAAACCT  749
      |||||||||||||| ||| ||||||||||||||||||||||||||||| |
seq2  ACAGCAATAAAACCTTTATTGAAGACAGCACCCAAGTCTTTTATAAACTT  750

seq1  CCCTCCAATACTGTTAAATTTTCAAAATAGGAACTCCTGACATTCATGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAATACTGTTAAATTTTCAAAATAGGAACTCCTGACATTCATGGA  800

seq1  TTATTGGGTCACTGTGTCTAAATGGGAGAAATAGAATTGGAAAGGGCAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTATTGGGTCACTGTGTCTAAATGGGAGAAATAGAATTGGAAAGGGC-AC  849

seq1  GTAATTATGTCTGTCTGCAGCATTTTATATTCTCAGAAGTGGTTTAGGTT  899
      ||| |||||||||||||| ||||||||| |||||| ||| ||||||||||
seq2  GTATTTATGTCTGTCTGC-GCATTTTAT-TTCTCAAAAGGGGTTTAGGTT  897

seq1  ACATCGCT  907
       |||||||
seq2  -CATCGCT  904